View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_high_51 (Length: 239)
Name: NF5404_high_51
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_high_51 |
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| [»] scaffold0479 (1 HSPs) |
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| [»] scaffold0464 (1 HSPs) |
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| [»] scaffold0210 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 54 - 224
Target Start/End: Complemental strand, 16071874 - 16071704
Alignment:
| Q |
54 |
actctccatattattcaaccctatctttgcacaattgcaaattattaatcttgaattgctcatatatatcactagccacgttacggaaggaaatcaataa |
153 |
Q |
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| T |
16071874 |
actctccatattattcaaccctatctttgcacaattgcaaattattaatcttgaattgctcatatatatcactagccacgttacggaaggaaatcaataa |
16071775 |
T |
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| Q |
154 |
acccatcaataagatcctcatggccttcaaaaagtaaagaaacctgaagaaataaaatattaattaaaatg |
224 |
Q |
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| T |
16071774 |
acccatcaataagatcctcatggccttcaaagagtaaagaaacctgaagaaataaaatattaattaaaatg |
16071704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 70 - 211
Target Start/End: Complemental strand, 16068572 - 16068432
Alignment:
| Q |
70 |
aaccctatctttgcacaattgcaaattattaatcttgaattgctcatatatatcactagccacgttacggaaggaaatcaataaacccatcaataagatc |
169 |
Q |
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| T |
16068572 |
aaccctatctttgcacaattgcaaattattaatcttgaattgctcat-tatatcactagccacgtaggggaaggaaattagcaaactcatgaataagatc |
16068474 |
T |
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| Q |
170 |
ctcatggccttcaaaaagtaaagaaacctgaagaaataaaat |
211 |
Q |
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| T |
16068473 |
atcatgaccttgaaagagtatagcaacctgaagaagtaaaat |
16068432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 224
Target Start/End: Complemental strand, 16078913 - 16078759
Alignment:
| Q |
70 |
aaccctatctttgcacaattgcaaattattaatcttgaattgctcatatatatcactagccacgttacggaaggaaatcaataaacccatcaataagatc |
169 |
Q |
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| T |
16078913 |
aaccctatctttgcacaattgcaaattattaaccttcaattgcccatttatattactagcgacgaagaggaatgaaatttgtaaacccttcaatgaggtc |
16078814 |
T |
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| Q |
170 |
ctcatggccttcaaaaagtaaagaaacctgaagaaataaaatattaattaaaatg |
224 |
Q |
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| T |
16078813 |
atcgtggccttcgaaaagcacagcaacctgaagaagtaaaaacataattaaaatg |
16078759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 16071932 - 16071894
Alignment:
| Q |
1 |
ccaagaacagtagataatagatactctccatattccctc |
39 |
Q |
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| T |
16071932 |
ccaagaacagtagataatagatactctacatattccctc |
16071894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 12814 - 12933
Alignment:
| Q |
105 |
tgaattgctcatatatatcactagccacgttacggaaggaaatcaataaacccatcaataagatcctcatggccttcaaaaagtaaagaaacctgaagaa |
204 |
Q |
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|||||||||||||||||||| ||||||| | |||| ||||| | ||||||||||||| ||||| ||||||||||| ||||||| || ||||||||||| |
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| T |
12814 |
tgaattgctcatatatatcattagccacatagaggaacgaaattagtaaacccatcaatgagatcatcatggccttcgaaaagtacagcaacctgaagaa |
12913 |
T |
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| Q |
205 |
ataaaatattaattaaaatg |
224 |
Q |
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| T |
12914 |
gtaaaatcataattaaaatg |
12933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 12123 - 12080
Alignment:
| Q |
149 |
aataaacccatcaataagatcctcatggccttcaaaaagtaaag |
192 |
Q |
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| T |
12123 |
aataaacccatcaataagatcatcatggccttcaaaaagtaaag |
12080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 3388 - 3459
Alignment:
| Q |
153 |
aacccatcaataagatcctcatggccttcaaaaagtaaagaaacctgaagaaataaaatattaattaaaatg |
224 |
Q |
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| T |
3388 |
aacccatcaatgagatcatcatggccttcgaaaagtacagcaacctgaagaagtaaaatcataattaaaatg |
3459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 11593 - 11659
Alignment:
| Q |
158 |
atcaataagatcctcatggccttcaaaaagtaaagaaacctgaagaaataaaatattaattaaaatg |
224 |
Q |
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| T |
11593 |
atcaataggatcatcatggccttcaaaaagtaaaccaacctgaaaaagtaaaatcataatcaaaatg |
11659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 12721280 - 12721209
Alignment:
| Q |
153 |
aacccatcaataagatcctcatggccttcaaaaagtaaagaaacctgaagaaataaaatattaattaaaatg |
224 |
Q |
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| T |
12721280 |
aacccatcaatgagatcatcatggccttcgaaaagtacagcaacctgaagaagtaaaatcataattaaaatg |
12721209 |
T |
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