View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5404_high_7 (Length: 526)

Name: NF5404_high_7
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5404_high_7
NF5404_high_7
[»] chr4 (6 HSPs)
chr4 (17-492)||(21513291-21513766)
chr4 (44-125)||(30948806-30948887)
chr4 (44-125)||(42267516-42267597)
chr4 (44-125)||(48700444-48700525)
chr4 (408-466)||(6825034-6825092)
chr4 (81-125)||(2000535-2000579)
[»] chr8 (2 HSPs)
chr8 (155-466)||(26947504-26947815)
chr8 (44-125)||(9442715-9442796)
[»] chr2 (2 HSPs)
chr2 (44-125)||(827092-827173)
chr2 (44-103)||(13842489-13842548)
[»] chr6 (1 HSPs)
chr6 (44-125)||(27877332-27877413)
[»] chr5 (2 HSPs)
chr5 (44-125)||(41720023-41720104)
chr5 (44-125)||(34353623-34353704)
[»] chr3 (2 HSPs)
chr3 (44-125)||(5821898-5821979)
chr3 (44-125)||(2815886-2815967)
[»] chr7 (1 HSPs)
chr7 (44-125)||(8137082-8137163)
[»] scaffold0373 (1 HSPs)
scaffold0373 (408-466)||(15181-15239)
[»] chr1 (1 HSPs)
chr1 (456-488)||(8989466-8989498)


Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 17 - 492
Target Start/End: Complemental strand, 21513766 - 21513291
Alignment:
Q  17 gggtcaactcgagtgcaagatccatgatgaaagtggaatcttgaaagtggtgaaagataatcttgtggtgatgaaagcagaaaagatgacaagtaattta 116  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21513766 gggtcaactctaatgcaagatccatgatgaaagtggaatcttaaaagtggtgaaagataatcttgtggtgataaaagcagaaaagatgacaagtaattta 21513667  T
Q  117 tacatgctttcaggaggtaaattttagaatattctccgacaagaaacttcttctccagaatctactccaacaagagtaagatcattggtggatatatatg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21513666 tacatgctttcaggaggtaaattttagaatattctccgacaagaaacttcttctccagaatctactccaacaagagtaagatcattggtggatatatatg 21513567  T
Q  217 aaacttgcaacatggccaaacatgagcctaaaaactatgcagtggcgtcaaaaccagaactgtgtgccaaaggcaatggaggaaaagaactaacactatg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21513566 aaacttgcaacatggccaaacatgagcctaaaaactatgcagtggcgtcaaaaccagaactatgtgccaaaggcaatggaggaaaagaactaacactatg 21513467  T
Q  317 aaaatctttgaatgggcataagaaaaatcttcgagcatggtacacaagaattgatcggcatttcatcaatcgaggattcgggtagagcaagatttgagct 416  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21513466 aaaatctctgaatgggcataagaaaaatcttcgagcatggtacacaagaattgattggcatttcatcaatcgaggattcgggtagagcaagatttgagct 21513367  T
Q  417 accacgaactatgcttggagttatcaaaatttgtatcaaggaggagtgttgaaaaatgctacaaatttctagtaga 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21513366 accacgaactatgcttggagttatcaaaatttgtatcaaggaggagtgttgaaaaatgctacaaatttctagtaga 21513291  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 30948887 - 30948806
Alignment:
Q  44 tgaaagtggaatcttgaaagtggtgaaagataatcttgtggtgatgaaagcagaaaagatgacaagtaatttatacatgctt 125  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  30948887 tgaaagtggaatcttgaaagtagtgaaaggcaatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgctt 30948806  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 42267516 - 42267597
Alignment:
Q  44 tgaaagtggaatcttgaaagtggtgaaagataatcttgtggtgatgaaagcagaaaagatgacaagtaatttatacatgctt 125  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  42267516 tgaaagtggaatcttgaaagtagtgaaaggcaatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgctt 42267597  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 48700525 - 48700444
Alignment:
Q  44 tgaaagtggaatcttgaaagtggtgaaagataatcttgtggtgatgaaagcagaaaagatgacaagtaatttatacatgctt 125  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  48700525 tgaaagtggaatcttgaaagtagtgaaaggcaatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgctt 48700444  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 466
Target Start/End: Original strand, 6825034 - 6825092
Alignment:
Q  408 atttgagctaccacgaactatgcttggagttatcaaaatttgtatcaaggaggagtgtt 466  Q
    ||||||||||| ||||||||||||||||||||   |||| || ||||||||||||||||    
T  6825034 atttgagctactacgaactatgcttggagttactgaaatatgcatcaaggaggagtgtt 6825092  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 2000535 - 2000579
Alignment:
Q  81 gtggtgatgaaagcagaaaagatgacaagtaatttatacatgctt 125  Q
    ||||||||||||||||||||| | |||| |||| |||||||||||    
T  2000535 gtggtgatgaaagcagaaaagctcacaaataatctatacatgctt 2000579  T

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Target: chr8 (Bit Score: 180; Significance: 6e-97; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 155 - 466
Target Start/End: Complemental strand, 26947815 - 26947504
Alignment:
Q  155 acaagaaacttcttctccagaatctactccaacaagagtaagatcattggtggatatatatgaaacttgcaacatggccaaacatgagcctaaaaactat 254  Q
    ||||||||||||||||| | |||||||||||||||||||  ||||| |||||||||||||||||||||||||| |||| ||||||||||||   ||||||    
T  26947815 acaagaaacttcttctctaaaatctactccaacaagagtgggatcactggtggatatatatgaaacttgcaacttggctaaacatgagcctgtcaactat 26947716  T
Q  255 gcagtggcgtcaaaaccagaactgtgtgccaaaggcaatggaggaaaagaactaacactatgaaaatctttgaatgggcataagaaaaatcttcgagcat 354  Q
    | ||||| ||||||||||||| | |||||||||||||||||||||||||| | || |||| |||||||||||||||||||||| ||| ||| ||||||||    
T  26947715 gaagtggtgtcaaaaccagaattatgtgccaaaggcaatggaggaaaagatccaagactaagaaaatctttgaatgggcataataaacatcctcgagcat 26947616  T
Q  355 ggtacacaagaattgatcggcatttcatcaatcgaggattcgggtagagcaagatttgagctaccacgaactatgcttggagttatcaaaatttgtatca 454  Q
    ||||||||||||||||||  ||||| |||||||||||||| || |||| ||||||||||||||| ||||| |||||||||||||| | |||| || ||||    
T  26947615 ggtacacaagaattgatcaacattttatcaatcgaggatttggctagatcaagatttgagctactacgaattatgcttggagttaccgaaatatgcatca 26947516  T
Q  455 aggaggagtgtt 466  Q
    ||||||||||||    
T  26947515 aggaggagtgtt 26947504  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 9442796 - 9442715
Alignment:
Q  44 tgaaagtggaatcttgaaagtggtgaaagataatcttgtggtgatgaaagcagaaaagatgacaagtaatttatacatgctt 125  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  9442796 tgaaagtggaatcttgaaagtagtgaaaggcaatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgctt 9442715  T

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Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 827092 - 827173
Alignment:
Q  44 tgaaagtggaatcttgaaagtggtgaaagataatcttgtggtgatgaaagcagaaaagatgacaagtaatttatacatgctt 125  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  827092 tgaaagtggaatcttgaaagtagtgaaaggtaatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgctt 827173  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 13842548 - 13842489
Alignment:
Q  44 tgaaagtggaatcttgaaagtggtgaaagataatcttgtggtgatgaaagcagaaaagat 103  Q
    ||||||||| ||||||||||| |||||||  |||||| |||||||||||||| |||||||    
T  13842548 tgaaagtggcatcttgaaagtagtgaaaggaaatcttctggtgatgaaagcaaaaaagat 13842489  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 27877413 - 27877332
Alignment:
Q  44 tgaaagtggaatcttgaaagtggtgaaagataatcttgtggtgatgaaagcagaaaagatgacaagtaatttatacatgctt 125  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  27877413 tgaaagtggaatcttgaaagtagtgaaaggcaatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgctt 27877332  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 41720023 - 41720104
Alignment:
Q  44 tgaaagtggaatcttgaaagtggtgaaagataatcttgtggtgatgaaagcagaaaagatgacaagtaatttatacatgctt 125  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  41720023 tgaaagtggaatcttgaaagtagtgaaaggcaatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgctt 41720104  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 34353623 - 34353704
Alignment:
Q  44 tgaaagtggaatcttgaaagtggtgaaagataatcttgtggtgatgaaagcagaaaagatgacaagtaatttatacatgctt 125  Q
    ||||||||||||||||||||| |||||||  |||||||||||||| |||||||||||||| ||||||||| |||||||||||    
T  34353623 tgaaagtggaatcttgaaagtagtgaaaggcaatcttgtggtgataaaagcagaaaagatcacaagtaatctatacatgctt 34353704  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 5821979 - 5821898
Alignment:
Q  44 tgaaagtggaatcttgaaagtggtgaaagataatcttgtggtgatgaaagcagaaaagatgacaagtaatttatacatgctt 125  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  5821979 tgaaagtggaatcttgaaagtagtgaaaggcaatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgctt 5821898  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 2815967 - 2815886
Alignment:
Q  44 tgaaagtggaatcttgaaagtggtgaaagataatcttgtggtgatgaaagcagaaaagatgacaagtaatttatacatgctt 125  Q
    ||||||||||||||| ||||| ||||||   ||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  2815967 tgaaagtggaatctttaaagtagtgaaaagcaatcttgtggtgatgaaagcagaaaagatcacaagtaatctatacatgctt 2815886  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 8137163 - 8137082
Alignment:
Q  44 tgaaagtggaatcttgaaagtggtgaaagataatcttgtggtgatgaaagcagaaaagatgacaagtaatttatacatgctt 125  Q
    ||||||||||||||||||||| ||||||   ||||||||||||||||||| |||||| || ||||||||| |||||||||||    
T  8137163 tgaaagtggaatcttgaaagtagtgaaatgcaatcttgtggtgatgaaagaagaaaatatcacaagtaatctatacatgctt 8137082  T

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Target: scaffold0373 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 466
Target Start/End: Complemental strand, 15239 - 15181
Alignment:
Q  408 atttgagctaccacgaactatgcttggagttatcaaaatttgtatcaaggaggagtgtt 466  Q
    ||||||||||| ||||||||||||||||||||   |||| || ||||||||||||||||    
T  15239 atttgagctactacgaactatgcttggagttactgaaatatgcatcaaggaggagtgtt 15181  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 488
Target Start/End: Original strand, 8989466 - 8989498
Alignment:
Q  456 ggaggagtgttgaaaaatgctacaaatttctag 488  Q
    ||||||||||||||| |||||||||||||||||    
T  8989466 ggaggagtgttgaaatatgctacaaatttctag 8989498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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