View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5404_low_10 (Length: 477)
Name: NF5404_low_10
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 118 - 425
Target Start/End: Complemental strand, 27292989 - 27292682
Alignment:
| Q |
118 |
gttttattgtatcagcaattgactcagttataatcttaccatgttgtcccttgtcatgaaatgatcaacttgatggatacaattattgtttcttatataa |
217 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| |
|
|
| T |
27292989 |
gttttactgtatcagcaattgactcagatataagcttaccatgttgtcccttgtcatgaaatgatcaacttgatggaaacaattattatttcttaaataa |
27292890 |
T |
|
| Q |
218 |
tcatatgatgctttcagtacagctataaatcagtgttttcaaaaccaaaccaaccggttgaaccttgaaccagactttaccacggtttgatcccagtttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27292889 |
tcatatgatgctttcagtacagctataaatcaatgttttcaaaaccaaaccaaccggttgaaccttgaaccagactttaccacggtttgatcccagtttc |
27292790 |
T |
|
| Q |
318 |
gtctaagttcaagcagttcaaatctgttgacttgactcaggtctcatcatgtcaatattcgtttcaatttttatacactgcagttaacatatatttatga |
417 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27292789 |
gtctaagttcaagcagttcaaatccgttgacttgactcaggtctcatcatgtcaatattcgtttcaatttttatacactgcagttaacatatatttatga |
27292690 |
T |
|
| Q |
418 |
tttgacca |
425 |
Q |
| |
|
|||||||| |
|
|
| T |
27292689 |
tttgacca |
27292682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 27293059 - 27292986
Alignment:
| Q |
12 |
attatcatacaactagttcaccactaatttgttatgtgacttaagcattgctttaagggtttattagattgttt |
85 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
27293059 |
attatcatacaactagttcactactaatttgttatgtgacttaagcattgctttaagtgattattagattgttt |
27292986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 428 - 470
Target Start/End: Complemental strand, 27292611 - 27292569
Alignment:
| Q |
428 |
cttaatgcagaattgaatggttttagtgacatattgatgatgt |
470 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27292611 |
cttaatgcagaattgaatgattttagtgacatattgatgatgt |
27292569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University