View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_low_11 (Length: 456)
Name: NF5404_low_11
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 438
Target Start/End: Original strand, 54971654 - 54972063
Alignment:
| Q |
14 |
gagatgaacactaaatgacatgaatcttactacttcggggaagtaacttacctgtcatccattggcagacaagaaagagtgatatctgcaccgctctctc |
113 |
Q |
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| T |
54971654 |
gagatgaacactaaatgacatgaatcttactacttcggggaagtaacttacctgtcatccattggcagacaagaaagagtgatatctgcaccgctctctc |
54971753 |
T |
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| Q |
114 |
gatgatcctggaaaacgtcttaagagtcaataatttgaattaatctactgaactgaaagagagaatattgcttaattggttgacatgatccctactttaa |
213 |
Q |
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| T |
54971754 |
gatgatcctggaaaacgtcttaagagtcaataatttgaattaatctactgaactgaaagagagaatattgcttaattggttgacatgatccctactttaa |
54971853 |
T |
|
| Q |
214 |
caaagtccatatagtccatacggtagaggtgatccccagaaagaatcaagacatcttcaatatccttgctcctgggatcctacttcatgaaaaacatagt |
313 |
Q |
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| T |
54971854 |
caaagtccatatagtccatacggtagaggtgatccccagaaagaatcaaaacatcctcaatatccttgctcctgggatcctacttcatgaaaaacatagt |
54971953 |
T |
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| Q |
314 |
ttagatcatcacactaaattgcttattggtccataatattaaacagcataacctgcattaaagaaaaagctacaacttatattttgtggttttcttgatt |
413 |
Q |
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| T |
54971954 |
ttagatcatcacacttaattgcttattggtc---------------cataacctgcattaaagaaaaagctacaacttatattttgtggttttcttgatt |
54972038 |
T |
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| Q |
414 |
gctttaggctaataaatacctcaaa |
438 |
Q |
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| T |
54972039 |
gctttaggctaataaatacctcaaa |
54972063 |
T |
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