View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_low_12 (Length: 441)
Name: NF5404_low_12
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 51933904 - 51933472
Alignment:
| Q |
1 |
agttttttcctcactaaaactaatttttcttccctgtaatttggcagttatggatcaggcaatcggatcaagttagcgtacacgaggaaaatcattgatg |
100 |
Q |
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| T |
51933904 |
agttttttcctcactaaaactaatttttcttccctgtaatttggcagttatggatcaggcaatcggatcaagttagcgtacacgaggaaaatcattgatg |
51933805 |
T |
|
| Q |
101 |
ccattcattctggcagtctcttgaatgcgaaatacattaaaactgaagtgtttgggcttgagatcccaacagcaatagatggagtcccatctgaaatctt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51933804 |
ccattcattctggctgtctcttgaatgcgaaatacattaaaactgaagtgtttgggcttgagatcccaacagcaatagatggagtcccatctgaaatctt |
51933705 |
T |
|
| Q |
201 |
ggaccccataaacacggttagttaatacttaatattcagtatataagttttatacaactatatcacaatcttgaaggtatgaactgtacttgcatgaact |
300 |
Q |
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| T |
51933704 |
ggaccccataaacacggttagttaatacttaatattcagtatataagttttatacaactatatcacaatcttgaaggtatgaactgtacttgcatgaact |
51933605 |
T |
|
| Q |
301 |
gcagtggtttgaaaagaaggcctaccaagatacacttctgaaattagctggtctattcaagaacaattttgatggatttgtgagctacaagatagggaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51933604 |
gcagtggtttgaaaagaaggcctaccaagatacacttctgaaattagctggtctattcaagaacaattttgatggatttgtgagctacaagatagggaaa |
51933505 |
T |
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| Q |
401 |
gatcaaaagttaactgaagagattgtctctgct |
433 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
51933504 |
gatcaaaagttaactgaagagattgtctctgct |
51933472 |
T |
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