View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_low_14 (Length: 430)
Name: NF5404_low_14
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 356
Target Start/End: Original strand, 14394588 - 14394944
Alignment:
| Q |
7 |
tcgaagaatatcatgatgtcaccgcaatttatctaaactcactaacaaattttattttaaatcgaatctgcaaataaatattgagacaacatcaaaataa |
106 |
Q |
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| T |
14394588 |
tcgaacaaaatcatgatgtcaccgcgatttctcttaactcactaacaaatttaattttaaatcgaatctgcaaataaatattgagacaacatcaaaataa |
14394687 |
T |
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| Q |
107 |
aatgtggatgatgtagtctcaatctttgttgcaagaacataataatt-nnnnnnnttatggtattaccacttagattaatcgtacttcagttgcatattt |
205 |
Q |
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| T |
14394688 |
aatgtggatgatgtagtctcaatctttgttgcaagaacataataattaaaaaaaattatggtattaccacttagattaatcgtacttcagttgcatattt |
14394787 |
T |
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| Q |
206 |
ttcttaagatcaaaacatgatttataaactattttctaaatatgattttcacataagatgcatgcaaatgaacaac------nnnnnnnnnnnnttactt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14394788 |
ttcttaagatcaaaacatgatttataaactattttctaaatatgattttcacataagatgcatgcaaatgaacaacatatatatatatatatatttactt |
14394887 |
T |
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| Q |
300 |
tatacaaaaataaaataaaatcaataagttttttgtgatgtgagttttcaacattgt |
356 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14394888 |
tatacaaaaataaaataaaatgaataagttttttgtgatgtgagttttcaacattgt |
14394944 |
T |
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