View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_low_24 (Length: 370)
Name: NF5404_low_24
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_low_24 |
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| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 227086 - 226746
Alignment:
| Q |
11 |
cagagatagtggtgaaaatgtgtgacaaagttgttaactcagaaggtaaagttgttgatttgaatgaacaacaaagaaatagcatcaatgaagtaatcaa |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
227086 |
cagaaatagtggtgaaaatgtgtgacaaagttgttaactcagaaggtaaagttgttgatttgaacgaacaacaaagaaatagcatcaatgaagtaatcaa |
226987 |
T |
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| Q |
111 |
tggttttgcttccgatgcactgagaacactctgcgtagccttcaaggatattgaagcgtcttctgaagatggtaacagcattccagaggatgaatatact |
210 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
226986 |
tggttttgcttccgatgcactgagaacactctgtgtagccttcaaggatattgaagcgtcttctgaagatggcaacagcattccggaggatgaatatact |
226887 |
T |
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| Q |
211 |
ttaattgctattattgggatcaaggatccagtgaggcctggagttaaagaagctgttaagacttgtttggatgctggaattactgttagaatggtgaccg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
226886 |
ttaattgctattattgggatcaaggatccagtgaggcctggagttaaagaagctgttaagacttgtttggatgctggaattactgttagaatggtgaccg |
226787 |
T |
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| Q |
311 |
gtgataatataaacaccgctaaagctatagctagagaatgc |
351 |
Q |
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| T |
226786 |
gtgataatataaacaccgctaaagctatagctagagaatgc |
226746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 351
Target Start/End: Original strand, 14590292 - 14590632
Alignment:
| Q |
11 |
cagagatagtggtgaaaatgtgtgacaaagttgttaactcagaaggtaaagttgttgatttgaatgaacaacaaagaaatagcatcaatgaagtaatcaa |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14590292 |
cagaaatagtggtgaaaatgtgtgacaaagttgttaactcagaaggtaaagttgttgatttgaacgaacaacaaagaaatagcatcaatgaagtaatcaa |
14590391 |
T |
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| Q |
111 |
tggttttgcttccgatgcactgagaacactctgcgtagccttcaaggatattgaagcgtcttctgaagatggtaacagcattccagaggatgaatatact |
210 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
14590392 |
tggttttgcttccgatgcactgagaacactctgtgtagccttcaaggatattgaagcgtcttctgaagatggcaacagcattccggaggatgaatatact |
14590491 |
T |
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| Q |
211 |
ttaattgctattattgggatcaaggatccagtgaggcctggagttaaagaagctgttaagacttgtttggatgctggaattactgttagaatggtgaccg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14590492 |
ttaattgctattattgggatcaaggatccagtgaggcctggagttaaagaagctgttaagacttgtttggatgctggaattactgttagaatggtgaccg |
14590591 |
T |
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| Q |
311 |
gtgataatataaacaccgctaaagctatagctagagaatgc |
351 |
Q |
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| T |
14590592 |
gtgataatataaacaccgctaaagctatagctagagaatgc |
14590632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 187877 - 187951
Alignment:
| Q |
16 |
atagtggtgaaaatgtgtgacaaagttgttaactcagaaggtaaagttgttgatttgaatgaacaacaaagaaat |
90 |
Q |
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| T |
187877 |
atagtggttaaaatgtgtgagaaagttgttaatgcataaggcaaagttgtcgattttaatgaacaacaaagaaat |
187951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 350
Target Start/End: Original strand, 37757786 - 37757912
Alignment:
| Q |
224 |
ttgggatcaaggatccagtgaggcctggagttaaagaagctgttaagacttgtttggatgctggaattactgttagaatggtgaccggtgataatataaa |
323 |
Q |
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|||| ||||||||||| || | ||||| || || ||||||||| | |||||| | | |||||||| || ||| | ||||| || |||||||| ||||| |
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| T |
37757786 |
ttggaatcaaggatcctgtacgccctggggtaaaggaagctgttcaaacttgtattgcagctggaataaccgttcgcatggtcactggtgataacataaa |
37757885 |
T |
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| Q |
324 |
caccgctaaagctatagctagagaatg |
350 |
Q |
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| T |
37757886 |
tacagctaaagctatagctaaagaatg |
37757912 |
T |
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