View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5404_low_26 (Length: 355)

Name: NF5404_low_26
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5404_low_26
NF5404_low_26
[»] chr3 (4 HSPs)
chr3 (8-340)||(5323629-5323961)
chr3 (20-131)||(6056613-6056725)
chr3 (13-127)||(3519300-3519415)
chr3 (39-131)||(43752101-43752193)
[»] chr1 (3 HSPs)
chr1 (21-106)||(3823775-3823859)
chr1 (21-101)||(22572098-22572179)
chr1 (14-89)||(26515669-26515744)
[»] chr8 (4 HSPs)
chr8 (20-106)||(20684106-20684192)
chr8 (38-132)||(41643158-41643252)
chr8 (13-131)||(7503903-7504022)
chr8 (42-83)||(7888403-7888444)
[»] chr5 (3 HSPs)
chr5 (13-102)||(36855229-36855319)
chr5 (14-131)||(30860601-30860718)
chr5 (20-131)||(5069101-5069213)
[»] chr4 (2 HSPs)
chr4 (25-102)||(4942988-4943065)
chr4 (16-128)||(36087266-36087378)
[»] chr7 (4 HSPs)
chr7 (32-132)||(18442021-18442121)
chr7 (20-106)||(26554368-26554455)
chr7 (41-88)||(27314686-27314733)
chr7 (45-122)||(31078474-31078551)
[»] chr6 (18 HSPs)
chr6 (14-131)||(10385363-10385480)
chr6 (38-106)||(5764158-5764226)
chr6 (38-106)||(5767693-5767761)
chr6 (38-106)||(5771228-5771296)
chr6 (38-106)||(5774763-5774831)
chr6 (38-106)||(5778298-5778366)
chr6 (38-106)||(5781833-5781901)
chr6 (38-106)||(5785368-5785436)
chr6 (38-106)||(5788903-5788971)
chr6 (38-106)||(5792438-5792506)
chr6 (38-106)||(5795973-5796041)
chr6 (38-106)||(5799508-5799576)
chr6 (38-106)||(5803043-5803111)
chr6 (38-106)||(5806578-5806646)
chr6 (38-106)||(5810113-5810181)
chr6 (38-106)||(5813648-5813716)
chr6 (38-106)||(5817183-5817251)
chr6 (65-106)||(9860194-9860235)
[»] chr2 (5 HSPs)
chr2 (13-105)||(11673474-11673566)
chr2 (34-82)||(12697424-12697472)
chr2 (13-121)||(2461515-2461624)
chr2 (67-132)||(19546562-19546627)
chr2 (39-131)||(11116521-11116612)


Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 5323961 - 5323629
Alignment:
Q  8 cgaagaaaatctgtcactaaatatcatttatcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctata 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5323961 cgaacaaaatctgtcactaaatatcatttatcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctata 5323862  T
Q  108 tgcatgtaggtaaaagtcatgtttagtataagttataaataattctttttcaaacaattgttttttaaacagggcgccacttttaatattttaagaggga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5323861 tgcatgtaggtaaaagtcatgtttagtataagttataaataattctttttcaaacaattgttttttaaacagggcgccacttttaatattttaagaggga 5323762  T
Q  208 ctccaatttgatttggacgaccttggttatttgtcannnnnnngtgttgttttagtttaaatttatcaattatagatagataaatctgactccttaaagc 307  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5323761 ctccaatttgatttggacgaccttggttatttgtcatttttttgtgttgttttagtttaaatttatcaattatagatagataaatctgactccttaaagc 5323662  T
Q  308 atagttaaaatcaacatttttatatagttattg 340  Q
    |||||||||||||||||||||||||||||||||    
T  5323661 atagttaaaatcaacatttttatatagttattg 5323629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 6056613 - 6056725
Alignment:
Q  20 gtcactaaatatcatttat-cgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctatatgcatgtaggt 118  Q
    |||||||||| |||||| | ||||||||||||| || |||| |||||||||| ||||||||||| ||||||  || |||||||||||| |   |||||||    
T  6056613 gtcactaaatgtcattttttcgtaggtaaaagtttggaagacaacaattttattgttaattatgaattgtccataagtaaatgtctatttatttgtaggt 6056712  T
Q  119 aaaagtcatgttt 131  Q
    |||||||||||||    
T  6056713 aaaagtcatgttt 6056725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 3519300 - 3519415
Alignment:
Q  13 aaaatctgtcactaaatatcatttatcg-taggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctatatgca 111  Q
    |||||| |||||||||| |||||| ||| ||||||||||| || | || | ||||||| || | ||||||| ||||||  || |||||||||||| |  |    
T  3519300 aaaatccgtcactaaatgtcatttttcggtaggtaaaagtttggatgacagcaattttgctatcaattatgaattgtccataagtaaatgtctatttata 3519399  T
Q  112 tgtaggtaaaagtcat 127  Q
    ||||||||||||||||    
T  3519400 tgtaggtaaaagtcat 3519415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 43752101 - 43752193
Alignment:
Q  39 cgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctatatgcatgtaggtaaaagtcatgttt 131  Q
    ||||||||||||| || |||| |||||||||||| | ||||||| ||||||  || |||||  ||||| |   ||||||||||||||||||||    
T  43752101 cgtaggtaaaagtttggaagacaacaattttactatcaattatgaattgtctataagtaaaaatctatttatttgtaggtaaaagtcatgttt 43752193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 3823775 - 3823859
Alignment:
Q  21 tcactaaatatcatttatcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    ||||||||| |||||| |||||||||||||||||||| |||||||||||| ||| || |||| ||||||| || ||||||||||||    
T  3823775 tcactaaatgtcatttttcgtaggtaaaagtctgaaatataacaattttattgtcaactatgtattgtca-taagtaaatgtctat 3823859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 22572098 - 22572179
Alignment:
Q  21 tcactaaatatcatttatc-gtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatg 101  Q
    ||||||||| |||||| || |||||| ||||||| ||||| | |||||||||||||||||||||||| ||  ||||||||||    
T  22572098 tcactaaatgtcatttttctgtaggttaaagtctaaaagacatcaattttactgttaattatgcattatccataggtaaatg 22572179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 26515669 - 26515744
Alignment:
Q  14 aaatctgtcactaaatatcatttatcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtc 89  Q
    |||||| ||||||||| || ||| ||||||||| |||| ||||||| |||||||||  ||| ||||||||||||||    
T  26515669 aaatctatcactaaatgtcctttttcgtaggtagaagtttgaaagacaacaattttgttgtcaattatgcattgtc 26515744  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 20684106 - 20684192
Alignment:
Q  20 gtcactaaatatcatttatcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||| | |||| | ||||||||||||| | |||| |||||||||||||  |||||||||||||   |||||||||||||||    
T  20684106 gtcactaaatgttattttttgtaggtaaaagtccggaagacaacaattttactgccaattatgcattgttcataggtaaatgtctat 20684192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 41643158 - 41643252
Alignment:
Q  38 tcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctatatgcatgtaggtaaaagtcatgttta 132  Q
    |||||||||||||| | ||||| ||| ||||| || | |||||||||||| |  || |||||||||| | || ||||||||||||||||||||||    
T  41643158 tcgtaggtaaaagttttaaagacaactattttgctatcaattatgcattgcccatatgtaaatgtctctttgtatgtaggtaaaagtcatgttta 41643252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 7503903 - 7504022
Alignment:
Q  13 aaaatctgtcactaaatatcatttatc-gtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctatatgca 111  Q
    ||||||||||| ||||| |||||| |  |||||||||||| || |||| | ||||||||| || ||||||||||| ||  || |||||||| ||| |       
T  7503903 aaaatctgtcattaaatgtcatttttttgtaggtaaaagtatggaagacatcaattttaccgtcaattatgcattatccttaagtaaatgtttatttatc 7504002  T
Q  112 tgtaggtaaaagtcatgttt 131  Q
    ||||||||||| ||||||||    
T  7504003 tgtaggtaaaaatcatgttt 7504022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 7888403 - 7888444
Alignment:
Q  42 aggtaaaagtctgaaagataacaattttactgttaattatgc 83  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7888403 aggtaaaagtctgaaagacaataattttactgtcaattatgc 7888444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 36855229 - 36855319
Alignment:
Q  13 aaaatctgtcactaaatatcatttatc-gtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgt 102  Q
    ||||||||||||||||| || ||| || |||||||||||||||||||| | ||||||| |||| ||||||||||| |   |||||||||||    
T  36855229 aaaatctgtcactaaatgtcctttttccgtaggtaaaagtctgaaagacagcaattttgctgtcaattatgcattattcataggtaaatgt 36855319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 30860601 - 30860718
Alignment:
Q  14 aaatctgtcactaaatatcatttatcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctatatgcatg 113  Q
    |||||||||||||||| ||||||   |||| |||||||||  ||   ||| ||||||||   |||||| | ||||| |||||||||||||||| || |||    
T  30860601 aaatctgtcactaaatgtcattttctgtagataaaagtctagaattcaactattttactaacaattataccttgtccgtaggtaaatgtctatttgtatg 30860700  T
Q  114 taggtaaaagtcatgttt 131  Q
    | ||||||||| ||||||    
T  30860701 tgggtaaaagttatgttt 30860718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 5069101 - 5069213
Alignment:
Q  20 gtcactaaatatca-tttatcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctatatgcatgtaggt 118  Q
    |||| ||||||||| ||| ||||| |||||||| |||||||  ||||||||  ||| |||||||||||||   | | ||||||| ||| ||  |||| ||    
T  5069101 gtcattaaatatcaatttttcgtaagtaaaagtttgaaagactacaattttgttgtcaattatgcattgttcatggataaatgtttatttgtttgtatgt 5069200  T
Q  119 aaaagtcatgttt 131  Q
    |||||||||||||    
T  5069201 aaaagtcatgttt 5069213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 4942988 - 4943065
Alignment:
Q  25 taaatatcatttatcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgt 102  Q
    |||||||||||| | ||| |||||||| |||||||||| |||||| |||| ||||||||||||||   ||||||||||    
T  4942988 taaatatcattttttgtaagtaaaagtttgaaagataataattttgctgtcaattatgcattgtctacaggtaaatgt 4943065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 36087378 - 36087266
Alignment:
Q  16 atctgtcactaaatatcatttatc-gtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctatatgcatgt 114  Q
    |||||||||||||| || ||| || |||||| ||||||||||||| |||||||||  |||  |||||||||| ||  | | |||| |||||| || ||||    
T  36087378 atctgtcactaaatgtcctttttccgtaggtgaaagtctgaaagacaacaattttgttgtcgattatgcattatctatggataaa-gtctatttgtatgt 36087280  T
Q  115 aggtaaaagtcatg 128  Q
    || |||||||||||    
T  36087279 agataaaagtcatg 36087266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 18442021 - 18442121
Alignment:
Q  32 catttatcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctatatgcatgtaggtaaaagtcatgttt 131  Q
    ||||| || |||||| |||| ||||||| |||||||||  ||| |||||||||||||   ||| ||||||||||| |  ||||||||||||| |||||||    
T  18442021 catttttcataggtacaagtttgaaagacaacaattttgttgtaaattatgcattgtttatagataaatgtctatttatatgtaggtaaaagccatgttt 18442120  T
Q  132 a 132  Q
    |    
T  18442121 a 18442121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 26554455 - 26554368
Alignment:
Q  20 gtcactaaatatcatttatc-gtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||| ||||||||| ||||||||||||| ||||   ||| ||||||||||  || || ||||||| ||| ||||||||||||    
T  26554455 gtcactaaatgtcatttatctgtaggtaaaagtccgaaattcaactattttactgtccataatacattgtccgtaagtaaatgtctat 26554368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 27314733 - 27314686
Alignment:
Q  41 taggtaaaagtctgaaagataacaattttactgttaattatgcattgt 88  Q
    ||||||||||| ||||||| ||||||||| || |||||||||||||||    
T  27314733 taggtaaaagtatgaaagacaacaattttgctattaattatgcattgt 27314686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 31078551 - 31078474
Alignment:
Q  45 taaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctatatgcatgtaggtaaaa 122  Q
    |||||||||| |||| |||||||||  ||| |||||||||||||   |||| |||||||||| ||  |||||||||||    
T  31078551 taaaagtctggaagacaacaattttgttgtcaattatgcattgttcataggaaaatgtctatttgtttgtaggtaaaa 31078474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 10385480 - 10385363
Alignment:
Q  14 aaatctgtcactaaatatcatttatcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctatatgcatg 113  Q
    ||||| |||| ||||||||||||   |||||||||||| || |||| | |||||||  ||| ||||||| ||||||  || ||||| |||||| ||   |    
T  10385480 aaatccgtcaataaatatcattttatgtaggtaaaagtttggaagacagcaattttgttgtcaattatgaattgtccataagtaaaggtctatttgtccg 10385381  T
Q  114 taggtaaaagtcatgttt 131  Q
    ||||||||||||||||||    
T  10385380 taggtaaaagtcatgttt 10385363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 5764226 - 5764158
Alignment:
Q  38 tcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||||| | ||||||| ||||||||| |||| ||||||| ||||||| || ||||| ||||||    
T  5764226 tcgtaggtaaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctat 5764158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 5767761 - 5767693
Alignment:
Q  38 tcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||||| | ||||||| ||||||||| |||| ||||||| ||||||| || ||||| ||||||    
T  5767761 tcgtaggtaaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctat 5767693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 5771296 - 5771228
Alignment:
Q  38 tcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||||| | ||||||| ||||||||| |||| ||||||| ||||||| || ||||| ||||||    
T  5771296 tcgtaggtaaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctat 5771228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 5774831 - 5774763
Alignment:
Q  38 tcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||||| | ||||||| ||||||||| |||| ||||||| ||||||| || ||||| ||||||    
T  5774831 tcgtaggtaaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctat 5774763  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 5778366 - 5778298
Alignment:
Q  38 tcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||||| | ||||||| ||||||||| |||| ||||||| ||||||| || ||||| ||||||    
T  5778366 tcgtaggtaaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctat 5778298  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 5781901 - 5781833
Alignment:
Q  38 tcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||||| | ||||||| ||||||||| |||| ||||||| ||||||| || ||||| ||||||    
T  5781901 tcgtaggtaaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctat 5781833  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 5785436 - 5785368
Alignment:
Q  38 tcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||||| | ||||||| ||||||||| |||| ||||||| ||||||| || ||||| ||||||    
T  5785436 tcgtaggtaaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctat 5785368  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 5788971 - 5788903
Alignment:
Q  38 tcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||||| | ||||||| ||||||||| |||| ||||||| ||||||| || ||||| ||||||    
T  5788971 tcgtaggtaaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctat 5788903  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 5792506 - 5792438
Alignment:
Q  38 tcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||||| | ||||||| ||||||||| |||| ||||||| ||||||| || ||||| ||||||    
T  5792506 tcgtaggtaaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctat 5792438  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 5796041 - 5795973
Alignment:
Q  38 tcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||||| | ||||||| ||||||||| |||| ||||||| ||||||| || ||||| ||||||    
T  5796041 tcgtaggtaaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctat 5795973  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 5799576 - 5799508
Alignment:
Q  38 tcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||||| | ||||||| ||||||||| |||| ||||||| ||||||| || ||||| ||||||    
T  5799576 tcgtaggtaaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctat 5799508  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 5803111 - 5803043
Alignment:
Q  38 tcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||||| | ||||||| ||||||||| |||| ||||||| ||||||| || ||||| ||||||    
T  5803111 tcgtaggtaaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctat 5803043  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 5806646 - 5806578
Alignment:
Q  38 tcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||||| | ||||||| ||||||||| |||| ||||||| ||||||| || ||||| ||||||    
T  5806646 tcgtaggtaaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctat 5806578  T

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Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 5810181 - 5810113
Alignment:
Q  38 tcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||||| | ||||||| ||||||||| |||| ||||||| ||||||| || ||||| ||||||    
T  5810181 tcgtaggtaaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctat 5810113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 5813716 - 5813648
Alignment:
Q  38 tcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||||| | ||||||| ||||||||| |||| ||||||| ||||||| || ||||| ||||||    
T  5813716 tcgtaggtaaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctat 5813648  T

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Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 5817251 - 5817183
Alignment:
Q  38 tcgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||||| | ||||||| ||||||||| |||| ||||||| ||||||| || ||||| ||||||    
T  5817251 tcgtaggtaaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctat 5817183  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 9860194 - 9860235
Alignment:
Q  65 attttactgttaattatgcattgtcagtaggtaaatgtctat 106  Q
    |||||||||| ||| |||||||||| ||||||||||||||||    
T  9860194 attttactgtcaatgatgcattgtctgtaggtaaatgtctat 9860235  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 11673566 - 11673474
Alignment:
Q  13 aaaatctgtcactaaatatcatttatcg-taggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtcta 105  Q
    ||||||||||||||||| |||||| ||  ||||||||||| ||||||| | ||||||| |||| ||||||||||| ||  || |||||||||||    
T  11673566 aaaatctgtcactaaatgtcatttttctataggtaaaagt-tgaaagacatcaattttgctgtcaattatgcattatccataagtaaatgtcta 11673474  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 12697424 - 12697472
Alignment:
Q  34 tttatcgtaggtaaaagtctgaaagataacaattttactgttaattatg 82  Q
    |||| ||||||||||||| ||||||| |||||||||||||| |||||||    
T  12697424 tttaccgtaggtaaaagtttgaaagacaacaattttactgtcaattatg 12697472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 2461515 - 2461624
Alignment:
Q  13 aaaatctgtcactaaatatcatttatc-gtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctatatgca 111  Q
    |||||| |||||||||| ||||||||| |||||||||| | |  ||| ||  ||||||  ||| ||||||||||||||  ||  ||||||||||| || |    
T  2461515 aaaatccgtcactaaatgtcatttatccgtaggtaaaaatgtagaaggtagtaattttgatgtaaattatgcattgtccatatataaatgtctatttgta 2461614  T
Q  112 tgtaggtaaa 121  Q
    ||||||||||    
T  2461615 tgtaggtaaa 2461624  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 19546627 - 19546562
Alignment:
Q  67 tttactgttaattatgcattgtcagtaggtaaatgtctatatgcatgtaggtaaaagtcatgttta 132  Q
    |||||||| |||||| |||||||  ||||||||||| ||| ||  ||| |||||||||||||||||    
T  19546627 tttactgtcaattatacattgtccataggtaaatgtatatttgtctgttggtaaaagtcatgttta 19546562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 11116521 - 11116612
Alignment:
Q  39 cgtaggtaaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctatatgcatgtaggtaaaagtcatgttt 131  Q
    ||||||||||||| || |||| ||||||||| |||| |||| |  |||| || || |||||||||||| |   ||||||||||||||||||||    
T  11116521 cgtaggtaaaagtttggaagacaacaattttcctgtcaattttaaattgcca-taagtaaatgtctatttatctgtaggtaaaagtcatgttt 11116612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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