View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_low_29 (Length: 294)
Name: NF5404_low_29
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 278
Target Start/End: Original strand, 19398428 - 19398692
Alignment:
| Q |
14 |
ttcttataaataagagggttaacaacaaaacaaatttcaatttgtattactttgttaattttaattttgccaaatctgtgtggtattcatagcaatttcc |
113 |
Q |
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| T |
19398428 |
ttcttataaataagagggttaacaacaaaacaaatttcaatttgtattactttgttaattttaattttgccaaatctgtgtggtattcatagcaatttcc |
19398527 |
T |
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| Q |
114 |
tctgtcatatcaaaaaggttcaaatgatgacagggtgatcaacataattgttgtccacaaaatagtatcaattaaacatttaccaatcgtaatcgtaata |
213 |
Q |
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| T |
19398528 |
tctgtcatatcaaaaaggttcaaatgatgacagggtgatcaacataattgttgtccacaaaatagtatcaattaaacatttaccaatcgtaatcgtaata |
19398627 |
T |
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| Q |
214 |
tgataagttttgaataatttggtaccaagtttaaaacttgaggttcaaagaaattatattattca |
278 |
Q |
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| T |
19398628 |
tgataagttttgaataatttggtaccaagtttaaaacttgaggttcaaagaaattatattattca |
19398692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 73 - 275
Target Start/End: Original strand, 19374462 - 19374664
Alignment:
| Q |
73 |
tttaattttgccaaatctgtgtggtattcatagcaatttcctctgtcatatcaaaaaggttcaaatgatgacagggtgatcaacataattgttgtccaca |
172 |
Q |
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| T |
19374462 |
tttagttttgccaaatatatgcggtattcatagcaatttcctttctcatatcaaaaaggttcaaatgatggcagggtgatccacataattgttatccgca |
19374561 |
T |
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| Q |
173 |
aaatagtatcaattaaacatttaccaatcgtaatcgtaatatgataagttttgaataatttggtaccaagtttaaaacttgaggttcaaagaaattatat |
272 |
Q |
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| T |
19374562 |
aaatagtatcaattaaacatttaccaatcgtaatcgtaatatgataagttttgaataatttggtaccaagttttaaacatgaggttcaaagaaattatat |
19374661 |
T |
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| Q |
273 |
tat |
275 |
Q |
| |
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||| |
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| T |
19374662 |
tat |
19374664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 73 - 277
Target Start/End: Original strand, 18102211 - 18102409
Alignment:
| Q |
73 |
tttaattttgccaaatctgtgtggtattcatagcaatttcctctgtcatatcaaaaaggttcaaatgatgacagggtgatcaacataattgttgtccaca |
172 |
Q |
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| T |
18102211 |
tttaattttgccaaatctgtgcggtattcatagcaatttcctttgtcatatcaaaaaggttgaaatgatgacagggtgatccacataattgttgtccaca |
18102310 |
T |
|
| Q |
173 |
aaatagtatcaattaaacatttaccaatcgtaatcgtaatatgataagttttgaataatttggtaccaagtttaaaacttgaggttcaaagaaattatat |
272 |
Q |
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| T |
18102311 |
aaatagtatcaattaaacattttcc------aatcgtaatatgataagttttgaataatttggcaccaagtttaaaacatgaggttcaaagaaattatat |
18102404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 19332885 - 19332960
Alignment:
| Q |
73 |
tttaattttgccaaatctgtgtggtattcatagcaatttcctctgtca-tatcaaaa-aggttcaaatgatgacag |
146 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||| |
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| T |
19332885 |
tttaattttgccaaatctgtgcggtattcatagcaatttcctttgtcattatcaaaacaggttcaaatgatgacag |
19332960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 19374385 - 19374445
Alignment:
| Q |
16 |
cttataaataagagggttaacaacaaaacaaatttcaatttgtattactttgttaatttta |
76 |
Q |
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||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
19374385 |
cttataaatcagagggttaactacaaaacaaatttaaatttgtattactttgttaatttta |
19374445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 19337317 - 19337357
Alignment:
| Q |
73 |
tttaattttgccaaatctgtgtggtattcatagcaatttcc |
113 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
19337317 |
tttaattttgccaaatctgtgcggtattcatagcaatttcc |
19337357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 19332810 - 19332869
Alignment:
| Q |
18 |
tataaataagagggttaacaacaaaacaaatttcaatttgtattactttgttaattttaa |
77 |
Q |
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||||||| |||||||||||||| || ||| || |||||||||||||||||||||||||| |
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| T |
19332810 |
tataaatctgagggttaacaacataataaaatttaatttgtattactttgttaattttaa |
19332869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 19379718 - 19379759
Alignment:
| Q |
97 |
tattcatagcaatttcctctgtcatatcaaaaaggttcaaat |
138 |
Q |
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|||||||||||||| ||| |||||||||||| |||||||||| |
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| T |
19379718 |
tattcatagcaattacctttgtcatatcaaagaggttcaaat |
19379759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 19423468 - 19423509
Alignment:
| Q |
226 |
aataatttggtaccaagtttaaaacttgaggttcaaagaaat |
267 |
Q |
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| T |
19423468 |
aataatttggaaccaattttaaaacatgaggttcaaagaaat |
19423509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 277
Target Start/End: Original strand, 17949303 - 17949355
Alignment:
| Q |
226 |
aataatttggtaccaagtttaaaacttgagg-ttcaaagaaattatattattc |
277 |
Q |
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|||||||||| |||||||||||||| ||||| |||||||||||| ||| |||| |
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| T |
17949303 |
aataatttggcaccaagtttaaaacatgaggtttcaaagaaattttataattc |
17949355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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