View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_low_33 (Length: 268)
Name: NF5404_low_33
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_low_33 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 48172099 - 48171836
Alignment:
| Q |
5 |
gttcaaacataaaggatacgcatgtgatggcctcttctgcagtacaatcttccctgctgcatacaaagccattcatattctacatcaattaccatcacag |
104 |
Q |
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| T |
48172099 |
gttcaaaaataaaggatacacatgtgatggcctcttctgcagtacaatcttccctgctgcatacaaagccattcatattctacatcaattaccatcacag |
48172000 |
T |
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| Q |
105 |
aaattatttatcaattatcaatcataaaacaacaacaataacaaagttcataccagcaaggtgcaactcaagtgacaaacagacaatgataacaattcta |
204 |
Q |
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| T |
48171999 |
aaattatttatcaattatcaatcataaaacaacaacaataacaaagttcataccagcaaggtgcaactcaagtgacaaacagacaatgataacaattcta |
48171900 |
T |
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| Q |
205 |
caaacgatttcactaaggttcaaaacccatttgatcaacaagtttctgcaaatccacagtccaa |
268 |
Q |
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| T |
48171899 |
caaacgatttcactaaggttcaaaacccatttgatcaacaagtttctgcaaatccacagtccaa |
48171836 |
T |
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