View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5404_low_48 (Length: 246)

Name: NF5404_low_48
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5404_low_48
NF5404_low_48
[»] chr1 (3 HSPs)
chr1 (17-236)||(44640269-44640488)
chr1 (18-238)||(44668583-44668803)
chr1 (28-238)||(44660120-44660330)
[»] chr4 (2 HSPs)
chr4 (28-238)||(29357480-29357690)
chr4 (28-237)||(29341454-29341663)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 44640269 - 44640488
Alignment:
Q  17 cttttttgcaaagcataccaaagaaagattggagcatgaccacttcgactaccactaattgtggtatccctagaaccaatcacttcaacatctttacata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44640269 cttttttgcaaagcataccaaagaaagattggagcatgaccacttcgactaccactaattgtggtatccctagaaccaatcacttcaacatctttacata 44640368  T
Q  117 aagtgttgatatgttctaaatgagttaataaaacaccacaaggaattggacatcccagaaacttatggccagagatagttatacttccgatgggcttctt 216  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44640369 aagtgttgatatgttctaaacgagttaataaaacaccacaaggaattggacatcccagaaacttatggccagagatagttatacttccaatgggcttctt 44640468  T
Q  217 gaaggtaatgcttggagcct 236  Q
    ||||||||||||||||||||    
T  44640469 gaaggtaatgcttggagcct 44640488  T

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Target: chr1; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 44668583 - 44668803
Alignment:
Q  18 ttttttgcaaagcataccaaagaaagattggagcatgaccacttcgactaccactaattgtggtatccctagaaccaatcacttcaacatctttacataa 117  Q
    ||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44668583 ttttttgcaaagcataccaaataaagattgaagcatgtccacttcgactaccactaattgtggtatccctagaaccaatcacttcaacatctttacataa 44668682  T
Q  118 agtgttgatatgttctaaatgagttaataaaacaccacaaggaattggacatcccagaaacttatggccagagatagttatacttccgatgggcttcttg 217  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || || ||||||||||| |||| |||||||    
T  44668683 agtgttgatatgttctaaacgagttaataaaacaccacaaggaattggacatcccaaaaacttatggcctgaaatggttatacttccaatggacttcttg 44668782  T
Q  218 aaggtaatgcttggagcctat 238  Q
    |||||||||||||||||||||    
T  44668783 aaggtaatgcttggagcctat 44668803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 44660120 - 44660330
Alignment:
Q  28 agcataccaaagaaagattggagcatgaccacttcgactaccactaattgtggtatccctagaaccaatcacttcaacatctttacataaagtgttgata 127  Q
    |||||||||||| ||||| |||||||| ||||  || |||||  | ||||||| |||||| ||| |||| |  ||||||||| || |||  |  || ||     
T  44660120 agcataccaaaggaagatgggagcatgcccacaacggctacctgtgattgtggcatcccttgaagcaatgatgtcaacatctctagatagtgcattcatg 44660219  T
Q  128 tgttctaaatgagttaataaaacaccacaaggaattggacatcccagaaacttatggccagagatagttatacttccgatgggcttcttgaaggtaatgc 227  Q
    | ||  ||| ||||||  ||||||||||||||   ||| ||||||| |||||||||||| || || |||| |||  ||||||| ||||||||| |||| |    
T  44660220 tatttcaaacgagttatcaaaacaccacaaggtgatgggcatcccaaaaacttatggcctgaaattgttacactgtcgatgggtttcttgaagctaatcc 44660319  T
Q  228 ttggagcctat 238  Q
    |||||||||||    
T  44660320 ttggagcctat 44660330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 238
Target Start/End: Complemental strand, 29357690 - 29357480
Alignment:
Q  28 agcataccaaagaaagattggagcatgaccacttcgactaccactaattgtggtatccctagaaccaatcacttcaacatctttacataaagtgttgata 127  Q
    ||||||||||||||||||||||||||| ||||| || |||||  | ||||| | |||||| ||| ||||   |||||||||| || |||  |  ||||||    
T  29357690 agcataccaaagaaagattggagcatgcccactacggctacctgtgattgtagcatcccttgaagcaatatattcaacatctctagatagtgcattgata 29357591  T
Q  128 tgttctaaatgagttaataaaacaccacaaggaattggacatcccagaaacttatggccagagatagttatacttccgatgggcttcttgaaggtaatgc 227  Q
    | ||  ||| ||||||  |||||||||||||||| ||| ||||||| ||||||||| || || ||||||| |||  |||| || ||||||||| |||| |    
T  29357590 tatttcaaacgagttatcaaaacaccacaaggaaatgggcatcccaaaaacttatgacctgaaatagttacactgtcgataggtttcttgaagctaatcc 29357491  T
Q  228 ttggagcctat 238  Q
    || ||||||||    
T  29357490 ttagagcctat 29357480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 29341663 - 29341454
Alignment:
Q  28 agcataccaaagaaagattggagcatgaccacttcgactaccactaattgtggtatccctagaaccaatcacttcaacatctttacataaagtgttgata 127  Q
    |||||||||||| |||||||||||||| ||||| || |||||  | || || | |||||| ||| ||||   |||||||||| || |||  |  ||||||    
T  29341663 agcataccaaagtaagattggagcatgcccactacggctacctgtgatggtagcatcccttgaagcaatatattcaacatctctagatagtgcattgata 29341564  T
Q  128 tgttctaaatgagttaataaaacaccacaaggaattggacatcccagaaacttatggccagagatagttatacttccgatgggcttcttgaaggtaatgc 227  Q
    | ||  ||| ||||||  |||||||||||||||  ||| ||||||| ||||||||| || || ||||||| |||  |||| || ||||||||| |||| |    
T  29341563 tatttcaaacgagttatcaaaacaccacaaggagatgggcatcccaaaaacttatgacctgaaatagttacactgtcgataggtttcttgaagctaatcc 29341464  T
Q  228 ttggagccta 237  Q
    || |||||||    
T  29341463 ttagagccta 29341454  T

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