View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_low_52 (Length: 240)
Name: NF5404_low_52
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 41781945 - 41782118
Alignment:
| Q |
16 |
caagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataaaagtgtgaatgtgacatgcatgttgaagtt |
115 |
Q |
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| T |
41781945 |
caagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataaaagtgtgaatgtga----catgttgaagtt |
41782040 |
T |
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| Q |
116 |
cttcatgagaccatggggaataattatcacattaaactgttgatatggccatttggtatataaatgtattagggtgtc |
193 |
Q |
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| T |
41782041 |
cttcatgagaccatgggaaataattgtcacattaaactgttgatatggccatttggtatataaatgtattagggtgtc |
41782118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 194
Target Start/End: Complemental strand, 40519688 - 40519525
Alignment:
| Q |
31 |
aaaataaaaattcgaatacaaagtcatcgcaatgttaat----atgttaatttacataaaagtgtgaatgtgacatgcatgttgaagttcttcatgagac |
126 |
Q |
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| T |
40519688 |
aaaaaaaaaatcccaatacaaagtcatcacaatgttaattaatatgttaatttacataaaagtgtgaatgtgacatg----ttgaagttgttcatgagac |
40519593 |
T |
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| Q |
127 |
catggggaataattatcacattaaactgttgatatggccatttggtatataaatgtattagggtgtca |
194 |
Q |
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| T |
40519592 |
catggagaataattgtcacattaaattgttgatgtgaccatctggtatataaatgtaatagggtgtca |
40519525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 40510685 - 40510645
Alignment:
| Q |
60 |
caatgttaatatgttaatttacataaaagtgtgaatgtgac |
100 |
Q |
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| T |
40510685 |
caatgttaatgtgttaaattacataaaagtgtgaatgtgac |
40510645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 40510629 - 40510564
Alignment:
| Q |
120 |
atgagaccatggggaataattatcacattaaactgttgatatggccatttggtatataaatgtatt |
185 |
Q |
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| T |
40510629 |
atgagaccatgggaaataattgtcacattaaattgttgatgtgaccatcgggtagataagtgtatt |
40510564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 18163733 - 18163561
Alignment:
| Q |
18 |
agaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataaaagtgtgaatgtgacatgcatgttgaagttct |
117 |
Q |
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| T |
18163733 |
agaggctaatatgaacaaaaaagtcctaaaacaaagtcatcaaaatgttaatatgttaatttacataaaagtgtgaatgtgacatg----ttgaagttgt |
18163638 |
T |
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| Q |
118 |
tcatgagaccatggggaataattatcacattaaactgttgatatggccatttggtatataaatgtattagggtgtca |
194 |
Q |
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| T |
18163637 |
tcatgagaccatgaggaatcattgtcacattaaattgttgatgtggccatctggtatataaatttattagggtgtca |
18163561 |
T |
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