View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_low_55 (Length: 238)
Name: NF5404_low_55
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 713640 - 713417
Alignment:
| Q |
1 |
caatacaagtataaaaacgcaataagtttaagtaaactacactatttaattgatcaaatatccaaaatacctctaatgttataataaattttcaaaatag |
100 |
Q |
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| T |
713640 |
caatacaagtataaaaacgcaataagtttaagtaaattacactatttaattgataaaatatccaaaatacctctaatattataataaattttcaaaatag |
713541 |
T |
|
| Q |
101 |
tcatatataaattcaaatttcctacgatcatcaattgtacacattcactccttatcaactaagttgcattttcaaagagctatagtgagaaattcttccc |
200 |
Q |
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| T |
713540 |
tcatatatgaattcaaatttcctacgatcatcaattgtacacattcactccttatcaactaagttccattttcaaagagctatagtgagaaattcttccg |
713441 |
T |
|
| Q |
201 |
tatcaaaagtaagttacaaatgct |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
713440 |
tatcaaaagtaagttacaaatgct |
713417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 710239 - 710291
Alignment:
| Q |
147 |
actccttatcaactaagttgcattttcaaagagctatagtgagaaattcttcc |
199 |
Q |
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|||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |
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| T |
710239 |
actccttatcaaataagttgaattttcaaggagctatagtgagaaattcttcc |
710291 |
T |
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