View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5404_low_60 (Length: 204)

Name: NF5404_low_60
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5404_low_60
NF5404_low_60
[»] chr5 (6 HSPs)
chr5 (43-97)||(33584501-33584555)
chr5 (41-97)||(10161328-10161384)
chr5 (49-97)||(23245202-23245250)
chr5 (43-97)||(26916847-26916901)
chr5 (41-97)||(5243486-5243542)
chr5 (157-185)||(33584615-33584643)
[»] chr1 (3 HSPs)
chr1 (41-97)||(23926097-23926153)
chr1 (43-97)||(5609919-5609973)
chr1 (42-97)||(34900136-34900191)
[»] chr2 (1 HSPs)
chr2 (43-97)||(32006505-32006559)
[»] chr4 (6 HSPs)
chr4 (42-97)||(3683602-3683657)
chr4 (51-97)||(12701836-12701882)
chr4 (56-97)||(33632866-33632907)
chr4 (43-97)||(19655514-19655568)
chr4 (41-97)||(2321833-2321889)
chr4 (49-97)||(9132113-9132161)
[»] chr3 (6 HSPs)
chr3 (41-97)||(16973037-16973093)
chr3 (49-97)||(42605714-42605762)
chr3 (41-97)||(22101350-22101406)
chr3 (41-97)||(22176294-22176350)
chr3 (43-97)||(38076746-38076800)
chr3 (64-97)||(51970218-51970251)
[»] chr8 (2 HSPs)
chr8 (41-97)||(35063722-35063778)
chr8 (56-97)||(5493264-5493305)
[»] chr7 (1 HSPs)
chr7 (43-97)||(32651915-32651969)
[»] scaffold0031 (1 HSPs)
scaffold0031 (49-97)||(78657-78705)


Alignment Details
Target: chr5 (Bit Score: 55; Significance: 8e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 33584501 - 33584555
Alignment:
Q  43 aacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33584501 aacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 33584555  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 10161384 - 10161328
Alignment:
Q  41 ggaacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    ||||||| |||| | ||||||||||||||||||| ||| || |||||||||||||||    
T  10161384 ggaacttgtgtaatcaaagtttaaaaagtgtaaaaaatgatgttttcaatgcaaata 10161328  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 23245250 - 23245202
Alignment:
Q  49 tgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    |||||| |||| |||||||||||||||||| || |||||||||||||||    
T  23245250 tgtagtcaaagattaaaaagtgtaaagaatgatgttttcaatgcaaata 23245202  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 26916901 - 26916847
Alignment:
Q  43 aacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    ||||| |||||| ||| ||||||||||||||| ||| || |||||||||||||||    
T  26916901 aacttgtgtagtaaaaatttaaaaagtgtaaaaaatgattttttcaatgcaaata 26916847  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 5243486 - 5243542
Alignment:
Q  41 ggaacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    ||||||| |||||| ||||||||||||| |||||  ||||  |||||||||||||||    
T  5243486 ggaacttatgtagtcaaagtttaaaaagggtaaaagataacgttttcaatgcaaata 5243542  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 33584615 - 33584643
Alignment:
Q  157 gtttatacatagaaaagaagggatttcat 185  Q
    |||||||||||||||||||||||||||||    
T  33584615 gtttatacatagaaaagaagggatttcat 33584643  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 23926097 - 23926153
Alignment:
Q  41 ggaacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  23926097 ggaacttgtgtagtcaaagtttaaaaagtgtaaagaatgatattttcaatgcaaata 23926153  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 5609973 - 5609919
Alignment:
Q  43 aacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    ||||| |||||||||||||||||||||||||||||| | ||| ||||| ||||||    
T  5609973 aacttgtgtagttaaagtttaaaaagtgtaaagaatgacattctcaatacaaata 5609919  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 34900191 - 34900136
Alignment:
Q  42 gaacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    |||||| |||||| |||||||||||||| |||||||| || || ||||||||||||    
T  34900191 gaacttgtgtagtcaaagtttaaaaagtataaagaatgatgttctcaatgcaaata 34900136  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 32006559 - 32006505
Alignment:
Q  43 aacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    ||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  32006559 aacttgtgtagtcaaagtttaaaaagtgtaaagaatgatattttcaatgcaaata 32006505  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 3683657 - 3683602
Alignment:
Q  42 gaacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    |||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||    
T  3683657 gaacatttgtagttaaagtttaaaaagtgtaaataataatgttttcaatacaaata 3683602  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 12701882 - 12701836
Alignment:
Q  51 tagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    |||| ||||||||||||||||||||||| || |||||||||||||||    
T  12701882 tagtcaaagtttaaaaagtgtaaagaatgatgttttcaatgcaaata 12701836  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 33632866 - 33632907
Alignment:
Q  56 aaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    ||||||||||||||||||||||| ||||||||||| ||||||    
T  33632866 aaagtttaaaaagtgtaaagaatgatattttcaatacaaata 33632907  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 19655568 - 19655514
Alignment:
Q  43 aacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    ||||| |||||| ||||||||||||||||||||||| || |||| ||| ||||||    
T  19655568 aacttgtgtagtcaaagtttaaaaagtgtaaagaattatgtttttaatacaaata 19655514  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 2321833 - 2321889
Alignment:
Q  41 ggaacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    ||||||| ||| || |||||||||||||||||||  || || |||||||||||||||    
T  2321833 ggaacttgtgtggtgaaagtttaaaaagtgtaaaagatgatgttttcaatgcaaata 2321889  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 9132113 - 9132161
Alignment:
Q  49 tgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    |||||| ||||||||||||||||||| ||| || |||||||| ||||||    
T  9132113 tgtagtcaaagtttaaaaagtgtaaaaaatgatgttttcaatccaaata 9132161  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 16973093 - 16973037
Alignment:
Q  41 ggaacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    ||||||| |||||| ||||||||||||||||||||||| || |||||||| ||||||    
T  16973093 ggaacttgtgtagtcaaagtttaaaaagtgtaaagaattatgttttcaatacaaata 16973037  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 42605762 - 42605714
Alignment:
Q  49 tgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    |||||||||||||||||||||||||| |||||||||||  |||||||||    
T  42605762 tgtagttaaagtttaaaaagtgtaaaaaataatattttttatgcaaata 42605714  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 22101350 - 22101406
Alignment:
Q  41 ggaacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    ||||||| |||||| |||||||||||||| |||||||| ||  ||||||||||||||    
T  22101350 ggaacttgtgtagtcaaagtttaaaaagtataaagaatgatgctttcaatgcaaata 22101406  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 22176294 - 22176350
Alignment:
Q  41 ggaacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    ||||||| |||||| |||||||||||||| |||| ||| || |||||||||||||||    
T  22176294 ggaacttgtgtagtcaaagtttaaaaagtataaataatgatgttttcaatgcaaata 22176350  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 38076746 - 38076800
Alignment:
Q  43 aacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    ||||| |||||||||| ||||||||||||||| ||| || |||||||| ||||||    
T  38076746 aacttgtgtagttaaaatttaaaaagtgtaaaaaatgatgttttcaatacaaata 38076800  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 97
Target Start/End: Complemental strand, 51970251 - 51970218
Alignment:
Q  64 aaaagtgtaaagaataatattttcaatgcaaata 97  Q
    ||||||||||||||||||||||| ||||||||||    
T  51970251 aaaagtgtaaagaataatatttttaatgcaaata 51970218  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 35063722 - 35063778
Alignment:
Q  41 ggaacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    ||||||| |||||| ||||||| ||||||||||||||  || |||||||||||||||    
T  35063722 ggaacttgtgtagtcaaagtttcaaaagtgtaaagaaagatgttttcaatgcaaata 35063778  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 5493264 - 5493305
Alignment:
Q  56 aaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    |||||| |||||||||||||||| || |||||||||||||||    
T  5493264 aaagttaaaaaagtgtaaagaattatgttttcaatgcaaata 5493305  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 32651969 - 32651915
Alignment:
Q  43 aacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    ||||| |||||| |||||||||||||| |||| ||| || |||||||||||||||    
T  32651969 aacttgtgtagtcaaagtttaaaaagtataaataatgatgttttcaatgcaaata 32651915  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 78657 - 78705
Alignment:
Q  49 tgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaaata 97  Q
    |||||| ||||||||||||||||| ||||| || |||| ||||||||||    
T  78657 tgtagtcaaagtttaaaaagtgtatagaatgatgtttttaatgcaaata 78705  T

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