View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_low_8 (Length: 521)
Name: NF5404_low_8
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 180 - 384
Target Start/End: Original strand, 24538429 - 24538634
Alignment:
| Q |
180 |
ttgtagtgattctagttctggacatgaatcatcatgttggatttaatattaattatgcgaaaaattgttattgtttaggttcttggatggctttttcttt |
279 |
Q |
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| T |
24538429 |
ttgtagtcattctagttctggacatgaatcatcatgttggatttaatattaattatgcgagaaatttttattgtttaggtttttggatggctttttcttt |
24538528 |
T |
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| Q |
280 |
caaatttcaaagatatcctccctttatatttcaatgctctaaattttcacattatttcctcaag-ttttatttttccaacttgagagaatcaaaatccat |
378 |
Q |
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| T |
24538529 |
caaatttcaaagatatcctccctttatatttcaatgctctaaattttcacattatttccacaagtttttttttttccaacttgagagaatcaaaatccat |
24538628 |
T |
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| Q |
379 |
aaccat |
384 |
Q |
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|||||| |
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| T |
24538629 |
aaccat |
24538634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 413 - 513
Target Start/End: Original strand, 24538676 - 24538774
Alignment:
| Q |
413 |
atttaaaaagttaaggttttaaataagagtaatgatatttgttaaccattttggaacaactctctcatattctcattgtgtcattacggtctcttcatct |
512 |
Q |
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| T |
24538676 |
atttaaaaagttaaggttttaaataagagtaatgatatttgttaaccattttgggacaa--ctctcatattctcattgtgtctttacggtctcttcatct |
24538773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 29704403 - 29704347
Alignment:
| Q |
38 |
cacaatttatctgttgcttatatttcatatcttttgggtttggaaaagttgtggatg |
94 |
Q |
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| T |
29704403 |
cacaatttatctgaggtttatatttcatatcttttggtttttgaagagttgtggatg |
29704347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 29704284 - 29704243
Alignment:
| Q |
188 |
attctagttctggacatgaatcatcatgttggatttaatatt |
229 |
Q |
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|||| ||||||||||||||||||| ||||| ||||||||||| |
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| T |
29704284 |
attccagttctggacatgaatcataatgtttgatttaatatt |
29704243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 29103747 - 29103810
Alignment:
| Q |
277 |
tttcaaatttcaaagatatcctccctttatatttcaatgctctaaattttcacattatttcctc |
340 |
Q |
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||||||||||||| | ||||||| |||||||||| |||| |||| ||| ||||||||||||||| |
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| T |
29103747 |
tttcaaatttcaatgttatcctctctttatattttaatggtctagattgtcacattatttcctc |
29103810 |
T |
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