View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5404_low_9 (Length: 487)
Name: NF5404_low_9
Description: NF5404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5404_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 39128585 - 39129070
Alignment:
| Q |
1 |
atagtatcactgtgtttatgtttcattttgtttgaaatttccttaacaaggtttcatttttgtgtggtccgagtgaatgccatagttgagaaattgattt |
100 |
Q |
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| T |
39128585 |
atagtatcactgtgtttatgtttgattttgtttgaaatttccttaacaaggtttcatttttgtgtggtctgagtgaatgccatagttgagaaattgattt |
39128684 |
T |
|
| Q |
101 |
taagggttttgcttgtttcaactatgttcaatttgaaaccaccaaataaacttatcaacattgttact----actaggtgtttatgtttattcttatttt |
196 |
Q |
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| T |
39128685 |
taagggttttgcttgtttcaactatgttcaatttgaaaccaccaaataaacttatcaacattgttacttactaccaggtgtttatgtttattcttatttt |
39128784 |
T |
|
| Q |
197 |
cttttatctgttggcaatgtatatatgttgttagagcggtggattctgttttcacttaactttgtttttcctgattagatttttaaatgtctattttctt |
296 |
Q |
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| T |
39128785 |
cttttatctgttggcaatgtatatatgttgttagagcggtggattctgttttcacttacctttgtttttcctgattagatttttaaatgtctattttctt |
39128884 |
T |
|
| Q |
297 |
ggtgtttattgtttgtgtttgcttttggaagtgtattgtagaagtttcttgaaggaagcttatttattgnnnnnnnnnnnnnnnncacaggcttttcttt |
396 |
Q |
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| T |
39128885 |
ggtgtttatcgtttgtgtttgcttttggaagtgtattgtagaagtttcttgaaggaagcttatttattgttttttggttttttttcacaggcttttcttt |
39128984 |
T |
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| Q |
397 |
ggtgtgaaggctactgttgaaaaatgatttttaagggttctgataagtcaaagtactgtgctgttggtgatggtgatgatgtccat |
482 |
Q |
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| T |
39128985 |
ggtgtgaaggctactgttgaaaaatgatttttaagggttctgataagtcaaagtactgtgctgttggtggtggtgatgatggccat |
39129070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 404 - 470
Target Start/End: Complemental strand, 39496094 - 39496028
Alignment:
| Q |
404 |
aggctactgttgaaaaatgatttttaagggttctgataagtcaaagtactgtgctgttggtgatggt |
470 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||| |
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| T |
39496094 |
aggctaccgttgaaaaatggcttttaagggttctgataagtcaaagttctgtggtgttggtggtggt |
39496028 |
T |
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