View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5405-Insertion-2 (Length: 1140)
Name: NF5405-Insertion-2
Description: NF5405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5405-Insertion-2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 883; Significance: 0; HSPs: 28)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 883; E-Value: 0
Query Start/End: Original strand, 6 - 991
Target Start/End: Complemental strand, 13101517 - 13100533
Alignment:
| Q |
6 |
cagtgaagagatggatgacttcctaaaagcactaacgaaggaaggatcgggaaagggggaaatggatgagaagtatcttagagacaatgcaatcactctc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13101517 |
cagtgaagagatggatgacttcctaaaagcactaacgaaggaaggatctggaaagggggaaatggatgagaagtatcttagagacaatgtaatcactctc |
13101418 |
T |
|
| Q |
106 |
tttttagcaggaaatggcccagttagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13101417 |
tttttagcaggaaatggcccagttagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatca |
13101318 |
T |
|
| Q |
206 |
aagataactgtcctacacaagaggagaatcagattccttcgagagatgtggatcttgataagctagtgtacctccatggagctatatgtgaaaccttgag |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13101317 |
aagataactgtcctacacaagaggagaatcagattccttcgagagatgagtatcttgataagctagtgtacctccatggagctatatgtgaaaccttgag |
13101218 |
T |
|
| Q |
306 |
gctttatcctcctgtaccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtgttagtccaaatacacggttattgtactct |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
13101217 |
gctttatcctcctgtaccttttgagcatatatgttcaatcaaatccgatatacttcctagtggagagcgttttagtccaaatacaaggttattgtactct |
13101118 |
T |
|
| Q |
406 |
ttgtatgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtac |
505 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13101117 |
ttgtacgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtac |
13101018 |
T |
|
| Q |
506 |
catcttacaagttcatagctttcaatacaggacctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttacc |
605 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13101017 |
catcttacaagttcatagctttcaat-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttacc |
13100919 |
T |
|
| Q |
606 |
aaagtttcacataaaggtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaaga |
705 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13100918 |
gaagtttcacatacaggtggtggaaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaaga |
13100819 |
T |
|
| Q |
706 |
tgcatttaacggaagtctctcgaactattggtgctacatgttgtatcttataacctattgtaattgttgctctttgtcttttgttaaacattgttatgtt |
805 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13100818 |
tgcatttaacggaagtctctcgaactattggtgctacatgttgtatcttataacccagtgtaattgttgctctttgtcttttgttaaacattgttatgtt |
13100719 |
T |
|
| Q |
806 |
attctctattttggaaattatgtgtctatgtaataatctgctttaagttggactgtggttatattttgaagttcttatcatggtcaggttatgttattct |
905 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13100718 |
attctctattttggaaattatgtgtctatgtaataatctgctttaagttggactgtggttatattttgaagttcttatcatggtctggttatgttattct |
13100619 |
T |
|
| Q |
906 |
ctattttagaaattatttgtcgatgtaataaactacttcaagttgaattatgtttatatttttgaagttattggc-aggttgtcaaa |
991 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||| |
|
|
| T |
13100618 |
ctattttagaaattatatgtcgatgtaataaactacttcaagttgaattaagtttata-ttttgaagttatgggcaaggttgtcaaa |
13100533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 6 - 725
Target Start/End: Complemental strand, 13007717 - 13006998
Alignment:
| Q |
6 |
cagtgaagagatggatgacttcctaaaagcactaacgaaggaaggatcgggaaagggggaaatggatgagaagtatcttagagacaatgcaatcactctc |
105 |
Q |
| |
|
||||||||| |||||||| || |||||||||| | |||||||||| | ||||| |||| |||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
13007717 |
cagtgaagaaatggatgattttgtaaaagcacttatgaaggaaggagctggaaacgggggaatggacgagaagtatcttagagacaatgtcctcactctc |
13007618 |
T |
|
| Q |
106 |
tttttagcaggaaatggcccagttagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatca |
205 |
Q |
| |
|
|||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13007617 |
tttttagcaggaaatggcacaattagttcaggtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagaaatca |
13007518 |
T |
|
| Q |
206 |
aagataactgtcctacacaagaggagaatcagattccttcgagagatgtggatcttgataagctagtgtacctccatggagctatatgtgaaaccttgag |
305 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| |
|
|
| T |
13007517 |
aagataactggcccacacaagaggagaatcagactcctttgagagatgtggatcttgataagctagtgtacctccatggagctctatgtgaagccatgag |
13007418 |
T |
|
| Q |
306 |
gctttatcctcctgtaccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtgttagtccaaatacacggttattgtactct |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13007417 |
gctttatcctcctgtaccttttgagcatatctgtgcaatcaattccgatatactacctagtggagagcgtgttagtccaaatacaaggttattgtactct |
13007318 |
T |
|
| Q |
406 |
ttgtatgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtac |
505 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13007317 |
ttgtacgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtac |
13007218 |
T |
|
| Q |
506 |
catcttacaagttcatagctttcaatacaggacctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttacc |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13007217 |
catcttacaagttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagcagctttgttacc |
13007118 |
T |
|
| Q |
606 |
aaagtttcacataaaggtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaaga |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13007117 |
aaagtttcacataaaggtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggttaaagtcactaaaaga |
13007018 |
T |
|
| Q |
706 |
tgcatttaacggaagtctct |
725 |
Q |
| |
|
||||||| || ||||||||| |
|
|
| T |
13007017 |
tgcatttgactgaagtctct |
13006998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 6 - 878
Target Start/End: Original strand, 13069851 - 13070721
Alignment:
| Q |
6 |
cagtgaagagatggatgacttcctaaaagcactaacgaaggaaggatcgggaaagggggaaatggatgagaagtatcttagagacaatgcaatcactctc |
105 |
Q |
| |
|
||||||| | || |||||||| |||||||||| | |||||||| || |||| ||| ||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
13069851 |
cagtgaataaattgatgactttgtaaaagcactgatgaaggaagaatatggaacaaggggaatggatgagaagtatcttagagacaatgcactctctctc |
13069950 |
T |
|
| Q |
106 |
tttttagcaggaaatggcccagttagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatca |
205 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
13069951 |
tttttagcaggaaatggcacagttacttcaggtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagaaataa |
13070050 |
T |
|
| Q |
206 |
aagataactgtcctacacaagaggagaatcagattccttcgagagatgtggatcttgataagctagtgtacctccatggagctatatgtgaaaccttgag |
305 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13070051 |
aagataactggcccacacaagaggagaatcagactccttggagagatgtggatcttgataatctagtgtaccttcatggagctatatgtgaaaccttgag |
13070150 |
T |
|
| Q |
306 |
gctttatcctcctgtaccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtgttagtccaaatacacggttattgtactct |
405 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13070151 |
actttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatactacctagtggagagcgtgttagtccaaatacaaggttattgtactct |
13070250 |
T |
|
| Q |
406 |
ttgtatgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtac |
505 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| | |
|
|
| T |
13070251 |
ttgtacgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgttc |
13070350 |
T |
|
| Q |
506 |
catcttacaagttcatagctttcaatacaggacctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttacc |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||| |||| || ||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13070351 |
catcttacaagttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttaca |
13070450 |
T |
|
| Q |
606 |
aaagtttcacataaaggtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaaga |
705 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
13070451 |
gaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaagctttcatttgttcttcacatgaaacatggcttcaaggttaaagtcactaaaaga |
13070550 |
T |
|
| Q |
706 |
tgcatttaacggaagtctct-cgaactattggtgctacatgttgtatcttataacctatt-gtaattgttgctctttgtcttttgttaaacattgttatg |
803 |
Q |
| |
|
||||||| || ||||||||| ||| | |||| || | || || | || ||||||||||| || ||||||| |||||||| ||||||||||||| |
|
|
| T |
13070551 |
tgcatttgactgaagtctctccgagcgattgctgacatatattttctcctataacctattagtcattgttgttctttgtc-------aaacattgttatg |
13070643 |
T |
|
| Q |
804 |
ttattctctattttggaaattatgtgtctatgtaataat---ctgctttaagttggactgtggttatattttgaagtt |
878 |
Q |
| |
|
|||||||||||||| || ||||| |||| |||||||||| ||||||||||||| |||| ||||||||||||||| |
|
|
| T |
13070644 |
ttattctctattttagatattatttgtcaatgtaataataaactgctttaagttgaactgcttttatattttgaagtt |
13070721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 40 - 712
Target Start/End: Complemental strand, 13204942 - 13204270
Alignment:
| Q |
40 |
acgaaggaaggatcgggaaagggggaaatggatgagaagtatcttagagacaatgcaatcactctctttttagcaggaaatggcccagttagttcagctc |
139 |
Q |
| |
|
||||||||||||| ||||||| |||||| || ||||| |||||||||| || || || ||||||| |||||||||| ||| |||| |||||||| || |
|
|
| T |
13204942 |
acgaaggaaggatatggaaaggaagaaatgagtgggaagtttcttagagacgatacactctctctcttcttagcaggaagtggtccagctagttcaggtc |
13204843 |
T |
|
| Q |
140 |
tcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagaggagaatcagat |
239 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13204842 |
taagttggtttttttggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagaggagaatcagat |
13204743 |
T |
|
| Q |
240 |
tccttcgagagatgtggatcttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcctgtaccttttgagcatatctgt |
339 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
13204742 |
tccttcgagagatgagtatcttgataagctagtgtaccttcatggagctatatgtgaagccttgagactttatcctcctgtaccttttgagcatatatgt |
13204643 |
T |
|
| Q |
340 |
gcaatcaaatccgatatactacctagtggagagcgtgttagtccaaatacacggttattgtactctttgtatgctatgggaaggatggaacaaatatggg |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13204642 |
gcaatcaaatccgatatactacctagtggagagcgtgttagtccaaatacaaggttattgtactctttgtacgctatgggaaggatggaacaaatatggg |
13204543 |
T |
|
| Q |
440 |
gagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacc |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13204542 |
gagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggtcc |
13204443 |
T |
|
| Q |
540 |
tagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccaaagtttcacataaaggtggtggcaggtcaccct |
639 |
Q |
| |
|
|||||||||| |||| || ||| |||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| | |||| |||||||||| |
|
|
| T |
13204442 |
tagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaattttcacataaagatagtggaaggtcaccct |
13204343 |
T |
|
| Q |
640 |
ataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt |
712 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| |||| || ||||| |||||||||||||||||||||| |
|
|
| T |
13204342 |
gtaaccccaaagatttcttttgttcttcacatgaaatatggtttaaaggttaaagtcactaaaagatgcattt |
13204270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 29 - 726
Target Start/End: Complemental strand, 13094893 - 13094196
Alignment:
| Q |
29 |
taaaagcactaacgaaggaaggatcgggaaagggggaaatggatgagaagtatcttagagacaatgcaatcactctctttttagcaggaaatggcccagt |
128 |
Q |
| |
|
||||||| |||| ||| |||||| |||||||| ||||| |||||||||||||||||||| |||| | ||| | | || || |||||||| || | |
|
|
| T |
13094893 |
taaaagccctaaagaatgaaggacatggaaagggagaaatcagtgagaagtatcttagagacactgcatttactatgatatttgccggaaatggtacaat |
13094794 |
T |
|
| Q |
129 |
tagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagag |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||||| |||| |||||| || |||| |||| |
|
|
| T |
13094793 |
tagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcagagataattggttaacacgagag |
13094694 |
T |
|
| Q |
229 |
gagaatcagattccttcgagagatgtggatcttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcctgtaccttttg |
328 |
Q |
| |
|
|| ||| |||| ||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13094693 |
gattatcggattactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctgtaccttttg |
13094594 |
T |
|
| Q |
329 |
agcatatctgtgcaatcaaatccgatatactacctagtggagagcgtgttagtccaaatacacggttattgtactctttgtatgctatgggaaggatgga |
428 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| | | ||||| |||||||||| ||| | |||||||||||| |||||||||||||||| |
|
|
| T |
13094593 |
agcatatctgtgcaatcaaatctgatatactacctagtggataccatgttactccaaatacaactttaatttactctttgtattctatgggaaggatgga |
13094494 |
T |
|
| Q |
429 |
acaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttc |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | || ||||| ||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13094493 |
acaaatatggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttc |
13094394 |
T |
|
| Q |
529 |
aatacaggacctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccaaagtttcacataaaggtggtgg |
628 |
Q |
| |
|
|| |||||||| |||| |||||| || || |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
13094393 |
aacacaggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtgg |
13094294 |
T |
|
| Q |
629 |
caggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcatttaacggaagtctctc |
726 |
Q |
| |
|
|||||||||| ||||||| | ||||||| | |||||| ||||||||||||||||||||| ||||| |||||||| |||||| || |||||||||| |
|
|
| T |
13094293 |
aaggtcaccctgtaaccccaaggctttctgtgtttcttcgcatgaaacatggcttgaaggttgaagtctctaaaagaagcatttgactgaagtctctc |
13094196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 29 - 726
Target Start/End: Complemental strand, 13162015 - 13161318
Alignment:
| Q |
29 |
taaaagcactaacgaaggaaggatcgggaaagggggaaatggatgagaagtatcttagagacaatgcaatcactctctttttagcaggaaatggcccagt |
128 |
Q |
| |
|
||||||| |||| ||| ||||||| |||||||||||||| |||||||||||||||||| | |||| ||||| | | || || |||||||| || | |
|
|
| T |
13162015 |
taaaagccctaaagaaagaaggatatggaaagggggaaatcagtgagaagtatcttagagatactgcactcactatggtgtttgccggaaatggttcaat |
13161916 |
T |
|
| Q |
129 |
tagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagag |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||||| ||||||||||| || | ||||||||| |
|
|
| T |
13161915 |
tagttcagctctcagttggtttttctggctcctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggctaacacaagag |
13161816 |
T |
|
| Q |
229 |
gagaatcagattccttcgagagatgtggatcttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcctgtaccttttg |
328 |
Q |
| |
|
|| |||| |||| || ||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
13161815 |
gataatcggattattttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatccacctataccttttg |
13161716 |
T |
|
| Q |
329 |
agcatatctgtgcaatcaaatccgatatactacctagtggagagcgtgttagtccaaatacacggttattgtactctttgtatgctatgggaaggatgga |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||| |||||||| ||||| ||||||| |||||||| |
|
|
| T |
13161715 |
agcatatctgtgcaatcaaatccgatatactacctagtggagaacgtattagtccaaatacaagtttaatgtactctatgtattctatgggcaggatgga |
13161616 |
T |
|
| Q |
429 |
acaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttc |
528 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||| | || ||||| ||| | |||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
13161615 |
acaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccttcttacaagttcatatctttc |
13161516 |
T |
|
| Q |
529 |
aatacaggacctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccaaagtttcacataaaggtggtgg |
628 |
Q |
| |
|
|| |||||||| |||| |||||| || || ||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
13161515 |
aacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtgg |
13161416 |
T |
|
| Q |
629 |
caggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcatttaacggaagtctctc |
726 |
Q |
| |
|
|||||||| | ||||||| | ||||||| | |||||| ||||||||||||||||||||| ||||| |||||||| |||||| || |||||||||| |
|
|
| T |
13161415 |
aaggtcaccttgtaaccccaaggctttctgtgtttcttcgcatgaaacatggcttgaaggttgaagtctctaaaagaagcatttgactgaagtctctc |
13161318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 29 - 712
Target Start/End: Complemental strand, 13130322 - 13129639
Alignment:
| Q |
29 |
taaaagcactaacgaaggaaggatcgggaaagggggaaatggatgagaagtatcttagagacaatgcaatcactctctttttagcaggaaatggcccagt |
128 |
Q |
| |
|
||||||| |||| ||| ||||||| |||||||| ||||| |||||||||||||||||| | |||| | ||| | ||||| || |||||||| || | |
|
|
| T |
13130322 |
taaaagccctaaagaatgaaggatatggaaagggtgaaatcagtgagaagtatcttagagatactgcatttactatgttttttgccggaaatggttcaat |
13130223 |
T |
|
| Q |
129 |
tagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagag |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||||| ||||||||||| || ||||||||| |
|
|
| T |
13130222 |
tagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacacaagag |
13130123 |
T |
|
| Q |
229 |
gagaatcagattccttcgagagatgtggatcttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcctgtaccttttg |
328 |
Q |
| |
|
| |||| |||| ||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
13130122 |
ggtaatcggattactttgaggcatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttg |
13130023 |
T |
|
| Q |
329 |
agcatatctgtgcaatcaaatccgatatactacctagtggagagcgtgttagtccaaatacacggttattgtactctttgtatgctatgggaaggatgga |
428 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||| | | |||||||||||||||| || | |||||||||||| |||||||||||||||| |
|
|
| T |
13130022 |
agcatatctgttcaatcaaatctgatatactacctagtggataccatgttagtccaaatacaactttgatttactctttgtattctatgggaaggatgga |
13129923 |
T |
|
| Q |
429 |
acaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttc |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | || ||||| ||| | ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13129922 |
acaaatatggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttc |
13129823 |
T |
|
| Q |
529 |
aatacaggacctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccaaagtttcacataaaggtggtgg |
628 |
Q |
| |
|
|| |||||||| |||| |||||| || || ||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
13129822 |
aacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtgg |
13129723 |
T |
|
| Q |
629 |
caggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt |
712 |
Q |
| |
|
|||||||||| ||||||| | ||||||| | |||||| ||||||||||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
13129722 |
aaggtcaccctgtaaccccaaggctttctgtgcttcttcgcatgaaacatggcttgaaggttgaagtctctaaaagaagcattt |
13129639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 29 - 712
Target Start/End: Original strand, 30367806 - 30368489
Alignment:
| Q |
29 |
taaaagcactaacgaaggaaggatcgggaaagggggaaatggatgagaagtatcttagagacaatgcaatcactctctttttagcaggaaatggcccagt |
128 |
Q |
| |
|
|||||||||| | ||||||||| || ||||| | || | || ||||||||||||||||||||||||| || |||| || |||||||| |||||| || | |
|
|
| T |
30367806 |
taaaagcactgatgaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacact |
30367905 |
T |
|
| Q |
129 |
tagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagag |
228 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||| || || | |
|
|
| T |
30367906 |
tagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagataattgtgtatcaaaacat |
30368005 |
T |
|
| Q |
229 |
gagaatcagattccttcgagagatgtggatcttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcctgtaccttttg |
328 |
Q |
| |
|
|||||| ||| |||| | | | |||||||||||||| |||||||||||||||||||||||| || ||||| | |||||| |||||||||||| |
|
|
| T |
30368006 |
gagaattggataacttcaatggtggaaagccttgataagctagtctacctccatggagctatatgtgaatccatgaggttgtatcctactgtaccttttg |
30368105 |
T |
|
| Q |
329 |
agcatatctgtgcaatcaaatccgatatactacctagtggagagcgtgttagtccaaatacacggttattgtactctttgtatgctatgggaaggatgga |
428 |
Q |
| |
|
||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| | ||||||||||||||||||||||||||||| |
|
|
| T |
30368106 |
agcttatcagtgcaatcaaatctgatatactacctagtggagagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatgga |
30368205 |
T |
|
| Q |
429 |
acaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttc |
528 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30368206 |
aaaaatatggggagaagattgcatggaatttaagcctgagagatgggtatcagagagaggacacattatacatgtaccatcttacaagttcatagctttc |
30368305 |
T |
|
| Q |
529 |
aatacaggacctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccaaagtttcacataaaggtggtgg |
628 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| |||| ||| |||||||||||||||| |||||||| |||||| |||||||||||| |||| |||| |
|
|
| T |
30368306 |
aatacaggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtgg |
30368405 |
T |
|
| Q |
629 |
caggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt |
712 |
Q |
| |
|
|||||||||| ||||||| | | |||| |||| ||| ||||||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
30368406 |
aaggtcaccctgtaacccctagggcttctgttgtcctttgaatgaaacatggcttgaacgtcaaggttactaaaagatgcattt |
30368489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 360
Target Start/End: Complemental strand, 19727670 - 19727316
Alignment:
| Q |
6 |
cagtgaagagatggatgacttcctaaaagcactaacgaaggaaggatcgggaaagggggaaatggatgagaagtatcttagagacaatgcaatcactctc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||| |
|
|
| T |
19727670 |
cagtgaagagatggatgacttcctaaaagcactaatgaaggaaggatctggaaagggggaaatgaatgagaagtatcttagagacaatttactcactctc |
19727571 |
T |
|
| Q |
106 |
tttttagcaggaaatggcccagttagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatca |
205 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
19727570 |
tttttagcaggaaatggcccagttagtacaggtctcagttggtttttttggcttgtttcgactcatcctattgtcgaagccaaaattattcaagaaatca |
19727471 |
T |
|
| Q |
206 |
aagataactgtcctacacaagaggagaatcagattccttcgagagatgtggatcttgataagctagtgtacctccatggagctatatgtgaaaccttgag |
305 |
Q |
| |
|
|||||||||| || |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| |||| | ||||| || ||||||| |
|
|
| T |
19727470 |
aagataactggcccacacaagaggagaaccagactcctttgagagatgtggatcttgataagctagtgtacctccacggagatctatgttaagccttgag |
19727371 |
T |
|
| Q |
306 |
gctttatcctcctgtaccttttgagcatatctgtgcaatcaaatccgatatacta |
360 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
19727370 |
actttatcctcctgtaccttttgagcatatatgtgcaatcaaatctcatatacta |
19727316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 712
Target Start/End: Original strand, 13244212 - 13244902
Alignment:
| Q |
28 |
ctaaaagcactaacgaaggaaggatcgggaaagggggaaatg---gatgagaagtatcttagagacaatgcaatcactctctttttagcaggaaatggcc |
124 |
Q |
| |
|
||||||| ||||| ||||||| ||| |||||||||||||||| |||||||||||| | ||||||| ||| | | |||||| ||||||||||| |
|
|
| T |
13244212 |
ctaaaagaactaatgaaggaaagattgggaaagggggaaatgatcgatgagaagtatatcagagacactgcggtaaatctcttcggtgcaggaaatggaa |
13244311 |
T |
|
| Q |
125 |
cagttagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacaca |
224 |
Q |
| |
|
|| ||||||||| ||| |||||||| || ||||||||||| ||||||||||||| |||||| ||||| |||||||| ||||||||||| |||| ||||| |
|
|
| T |
13244312 |
caattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattggggaagcgaaaattattcaagagatcaaagataattgtctaacaca |
13244411 |
T |
|
| Q |
225 |
agaggagaatcagattccttcgagagatgtggatc---ttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcctgta |
321 |
Q |
| |
|
|||||||||| || | | | ||||| |||||||||| || ||||| |||||||| |||||||||||||||||||| ||||||||| | |
|
|
| T |
13244412 |
agaggagaatttaatcaataatttaaacgtggaaaagattgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctg |
13244511 |
T |
|
| Q |
322 |
ccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtgttagtccaaatacacggttattgtactctttgtatgctatgggaa |
421 |
Q |
| |
|
| ||| |||| | || || |||||||| |||||||||||||||||||| | |||| ||||||||||| ||| | || ||||||||||| ||||||| |
|
|
| T |
13244512 |
gcatttcagcacaagtgcgctatcaaatctgatatactacctagtggagaacatgttggtccaaatacaaagttgatatattctttgtatgcaatgggaa |
13244611 |
T |
|
| Q |
422 |
ggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcat |
521 |
Q |
| |
|
||||| |||||||||||||||| || ||| |||||||||||||||| |||||| | |||| |||||| |||||| ||||||| |||||||||||||| |
|
|
| T |
13244612 |
ggatgcaacaaatatggggagatgattgcttggaatttaagcctgaaagatggatatcagctagaggagggattataaatgtaccgtcttacaagttcat |
13244711 |
T |
|
| Q |
522 |
agctttcaatacaggacctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccaaagtttcacataaag |
621 |
Q |
| |
|
|||||||||| |||| |||||||||||||| || || ||| |||||||| |||||||||| ||||| |||||| |||||||| ||||||| |||| || |
|
|
| T |
13244712 |
agctttcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacag |
13244811 |
T |
|
| Q |
622 |
gtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt |
712 |
Q |
| |
|
||||||| |||||||||| |||| | || |||| |||| ||| ||||||||| ||||| |||||| |||||| |||||||||||||| |
|
|
| T |
13244812 |
gtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcatgaaacacggcttaaaggtcgaagtcagtaaaagatgcattt |
13244902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 47 - 586
Target Start/End: Original strand, 13064929 - 13065468
Alignment:
| Q |
47 |
aaggatcgggaaagggggaaatggatgagaagtatcttagagacaatgcaatcactctctttttagcaggaaatggcccagttagttcagctctcagttg |
146 |
Q |
| |
|
||||| ||||||| ||| ||| | |||||||||||||||||||| |||| ||| ||| || ||||| ||||| ||| |||||||||||| ||||||||| |
|
|
| T |
13064929 |
aaggaacgggaaaagggaaaacgagtgagaagtatcttagagacactgcagtcaatctattgttagcgggaaacggcacagttagttcaggtctcagttg |
13065028 |
T |
|
| Q |
147 |
gtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagaggagaatcagattccttcg |
246 |
Q |
| |
|
||| || ||||||||||| ||||||| ||||||||||||| || |||||||| || |||||||| |||| | | || || || |||| |||| |
|
|
| T |
13065029 |
gttcttttggcttgtttcatgtcatcctgttgtggaagccaagattattcaagagatgaaagataattgtctatctgatgatgaaaacttgattacttca |
13065128 |
T |
|
| Q |
247 |
agagatgtggatcttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcctgtaccttttgagcatatctgtgcaatca |
346 |
Q |
| |
|
| | | | |||||||| ||| | |||||||| ||||||||||||||| |||| ||||||||||||||||||||| | ||||| | | |||||||| |
|
|
| T |
13065129 |
attgtggaaaagcttgataaactaatttacctccacggagctatatgtgaagccttaaggctttatcctcctgtacctatcgagcaaaagtttgcaatca |
13065228 |
T |
|
| Q |
347 |
aatccgatatactacctagtggagagcgtgttagtccaaatacacggttattgtactctttgtatgctatgggaaggatggaacaaatatggggagaaga |
446 |
Q |
| |
|
|| | |||||||| |||||||||| | ||| |||||||||||| || |||| |||| ||||||| | |||||||||||||| |||||||||||||||| |
|
|
| T |
13065229 |
aagctgatatacttcctagtggagtccatgtaagtccaaatacaaggatattatactatttgtattcaatgggaaggatggagaaaatatggggagaaga |
13065328 |
T |
|
| Q |
447 |
ctgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagt |
546 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| | || ||||| |||||||||||||| |||||||||||||||||||||||| |||| || |||||| |
|
|
| T |
13065329 |
ctgcatggaatttaagcctgagagatggatatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagt |
13065428 |
T |
|
| Q |
547 |
tgtatgggcaaggatattagcttcattcaaatgaagatgg |
586 |
Q |
| |
|
||| |||| || ||||| | |||| || |||||||||||| |
|
|
| T |
13065429 |
tgtttgggtaaagatatcaccttcgttgaaatgaagatgg |
13065468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 162; E-Value: 7e-86
Query Start/End: Original strand, 71 - 635
Target Start/End: Complemental strand, 13272041 - 13271474
Alignment:
| Q |
71 |
atgagaagtatcttagagacaatgcaatcactctctttttagcaggaaatggcccagttagttcagctctcagttggtttttctggcttgtttccactca |
170 |
Q |
| |
|
|||| |||||| ||||||||| |||| |||||||||| ||||||||||| |||||||||||| ||| |||||||| || ||||||||||| ||||| |
|
|
| T |
13272041 |
atgaaaagtatattagagacactgcattcactctcttggctgcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactca |
13271942 |
T |
|
| Q |
171 |
tcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagaggagaatcagattccttcgagagatgtggatc---ttgataag |
267 |
Q |
| |
|
||||| ||||||||| ||| | |||||||| ||||||||| | |||| ||||||||||||||| ||| | | |||| || |||||||| |
|
|
| T |
13271941 |
tcctaatgtggaagcaaaacttattcaagagatcaaagatcattgtctaacacaagaggagaatttgatcaataatttaaatgttgaaaacattgataag |
13271842 |
T |
|
| Q |
268 |
ctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcctgtaccttttgagcatatctgtgcaatcaaatccgatatactacctagtg |
367 |
Q |
| |
|
|| | ||||| |||| ||||||||||||||||||||| |||||||||||| |||| ||||| || | |||||| | || || |||||||||||||||| |
|
|
| T |
13271841 |
ctgatttaccttcatgcagctatatgtgaaaccttgagactttatcctcctataccatttgatcacaagtgtgcagttaattctgatatactacctagtg |
13271742 |
T |
|
| Q |
368 |
gagagcgtgttagtccaaatacacggttattgtactctttgtatgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctga |
467 |
Q |
| |
|
|| | | |||| ||||||| ||| |||| | |||||||||||||| |||||||| |||||||| ||||||| | || ||| |||| ||||||||||| |
|
|
| T |
13271741 |
gacaccatgttggtccaaacacaaagttaatatactctttgtatgcaatgggaagaatggaacatgtatggggtggtgattgcttggagtttaagcctga |
13271642 |
T |
|
| Q |
468 |
gagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtatgggcaaggatattagc |
567 |
Q |
| |
|
||||||| | ||||| | |||||| |||||||||||||||||||||||||||||||| |||||| |||| |||||||| ||| | || || ||||||||| |
|
|
| T |
13271641 |
gagatggatatcagataaaggacaaattatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaagctgtcttgggaaagatattagc |
13271542 |
T |
|
| Q |
568 |
ttcattcaaatgaagatggtcgcagctgctttgttaccaaagtttcacataaaggtggtggcaggtca |
635 |
Q |
| |
|
|| ||||||||||| ||||| |||||| || | ||| |||||||||||| | ||||||| |||||| |
|
|
| T |
13271541 |
tttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtca |
13271474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 161; E-Value: 3e-85
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 13214336 - 13214104
Alignment:
| Q |
6 |
cagtgaagagatggatgacttcctaaaagcactaacgaaggaaggatcgggaaagggggaaatggatgagaagtatcttagagacaatgcaatcactctc |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13214336 |
cagtgaagagatggatgacttcgtaaaagcactaatgaaggaaggatttggaaagggggaaatggatgagaagtatcttagagacaatgcgatcactctc |
13214237 |
T |
|
| Q |
106 |
tttttagcaggaaatggcccagttagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatca |
205 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||| ||||| ||||||||||| | |
|
|
| T |
13214236 |
tttttagcaggaaatggcccagttcgttcaggtctcatttggtttttctggcttgtttcaactcatcttattgtggaagctaaaattattcaagaaataa |
13214137 |
T |
|
| Q |
206 |
aagataactgtcctacacaagaggagaatcaga |
238 |
Q |
| |
|
||||| ||| || ||| ||||||||||||||| |
|
|
| T |
13214136 |
aagattacttgcccacagaagaggagaatcaga |
13214104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 259 - 712
Target Start/End: Original strand, 12963803 - 12964256
Alignment:
| Q |
259 |
cttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcctgtaccttttgagcatatctgtgcaatcaaatccgatatac |
358 |
Q |
| |
|
||||||||||| || || || ||||||||||| |||||| | || ||||||||||||||| |||| ||||| || | |||||||| ||||| |||||| |
|
|
| T |
12963803 |
cttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccatttgaacacaagtgtgcaattaaatcagatatat |
12963902 |
T |
|
| Q |
359 |
tacctagtggagagcgtgttagtccaaatacacggttattgtactctttgtatgctatgggaaggatggaacaaatatggggagaagactgcatggaatt |
458 |
Q |
| |
|
||||||||||||| | |||||||||||||||| ||| | || ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
12963903 |
tacctagtggagaccatgttagtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaacaaatatggggagaagattgcttggaatt |
12964002 |
T |
|
| Q |
459 |
taagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtatgggcaag |
558 |
Q |
| |
|
||||||||| |||||| | ||| | |||||| | |||||||| || |||||||| ||||||||||| |||||| |||| |||||||||||||| || || |
|
|
| T |
12964003 |
taagcctgaaagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattgggaaa |
12964102 |
T |
|
| Q |
559 |
gatattagcttcattcaaatgaagatggtcgcagctgctttgttaccaaagtttcacataaaggtggtggcaggtcaccctataaccccgaagctttctt |
658 |
Q |
| |
|
||||||||||| |||||||||| ||||| || ||| | |||| |||||||||||| | ||||||| ||||||| | | || || | | || || |
|
|
| T |
12964103 |
gatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaaggtcactttgttactccaagggttgcta |
12964202 |
T |
|
| Q |
659 |
ttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt |
712 |
Q |
| |
|
| ||||||| ||||||||||| |||||||||||||||| | |||||||||||| |
|
|
| T |
12964203 |
tggttcttcgtatgaaacatggtttgaaggtcaaagtcagtcaaagatgcattt |
12964256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 29 - 636
Target Start/End: Original strand, 19278863 - 19279473
Alignment:
| Q |
29 |
taaaagcactaacgaaggaaggatcgggaaagggggaaatggatgagaagtatcttagagacaatgcaatcactctctttttagcaggaaatggcccagt |
128 |
Q |
| |
|
|||||| ||||| ||||||| ||| ||||||||| |||| | |||||| |||| ||||||||| ||| ||| |||||| ||||| ||||| || | |
|
|
| T |
19278863 |
taaaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagatgtatattagagacactgctctcaatctcttggctgcaggtaatggaacaat |
19278962 |
T |
|
| Q |
129 |
tagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagag |
228 |
Q |
| |
|
|||||| | ||||| |||||| || ||||| || || |||||||||||||| ||||| ||||| |||||||| ||||| | ||||||| ||| ||||| |
|
|
| T |
19278963 |
tagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaaggttaactgtttaacaaaagag |
19279062 |
T |
|
| Q |
229 |
gagaatcagattcc---ttcgagagatgtggatcttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcctgtacctt |
325 |
Q |
| |
|
|| ||| ||| | || || | || |||||||||||||| || || |||||||||||||||||| |||| ||||||||||| |||||||| | |
|
|
| T |
19279063 |
gataatttgatcacaaattttagtgtgaaagagcttgataagctagtttatcttcatggagctatatgtgaagccttaaggctttatccacctgtaccat |
19279162 |
T |
|
| Q |
326 |
ttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtgttagtccaaatacacggttattgtactctttgtatgctatgggaaggat |
425 |
Q |
| |
|
|||| || | |||||| | || ||||||||||||||||||||||| | |||||||| ||||||| |||| | |||||||||||||| ||||||||||| |
|
|
| T |
19279163 |
ttgaacacaagtgtgcagttaattccgatatactacctagtggagaccatgttagtctaaatacaaagttaatatactctttgtatgcaatgggaaggat |
19279262 |
T |
|
| Q |
426 |
ggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagct |
525 |
Q |
| |
|
||||||||||||||| || || ||| | |||||| ||||||||||||| | || || |||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
19279263 |
ggaacaaatatggggtgatgattgcctagaatttcggcctgagagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagcg |
19279362 |
T |
|
| Q |
526 |
ttcaatacaggacctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccaaagtttcacataaaggtgg |
625 |
Q |
| |
|
|| ||| |||| || ||||| ||| | || || ||||||| ||| |||||||||| ||||| ||||||||| | ||| ||||||| |||| |||| | |
|
|
| T |
19279363 |
tttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcg |
19279462 |
T |
|
| Q |
626 |
tggcaggtcac |
636 |
Q |
| |
|
||| ||||||| |
|
|
| T |
19279463 |
tggaaggtcac |
19279473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 44 - 712
Target Start/End: Original strand, 13080575 - 13081246
Alignment:
| Q |
44 |
aggaaggatcgggaaagggggaaatggatgagaagtatcttagagacaatgcaatcactctctttttagcaggaaatggcccagttagttcagctctcag |
143 |
Q |
| |
|
||||||||| || |||||||||||||| ||||| |||| ||||||| | | |||||| |||||| | ||||||||||| || ||||| ||| ||||| |
|
|
| T |
13080575 |
aggaaggattggaaaagggggaaatggttgagaggtatattagagatactacaatcaatctcttggttgcaggaaatggaacaattagtacaggtctcac |
13080674 |
T |
|
| Q |
144 |
ttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagaggagaatcagattcct |
243 |
Q |
| |
|
||||||||| ||||| ||||| || ||||||| || || | ||||| |||||||| ||||||||||| ||| | ||| || |||||| || || |
|
|
| T |
13080675 |
ttggtttttttggctggtttcaacgcatcctagggtagatggtaaaattattcaagagatcaaagataattgtttaaaacacgatgagaattttatcgct |
13080774 |
T |
|
| Q |
244 |
tcgagagatgtggat---cttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcctgtaccttttgagcatatctgtg |
340 |
Q |
| |
|
|| |||||| |||||||||||||| ||||| |||||||| ||||||||| |||| ||||| |||||| ||||| | ||| |||| | |||| |
|
|
| T |
13080775 |
aatttaggtgtggaagagcttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcatttcagcacaagtgtg |
13080874 |
T |
|
| Q |
341 |
caatcaaatccgatatactacctagtggagagcgtgttagtccaaatacacggttattgtactctttgtatgctatgggaaggatggaacaaatatgggg |
440 |
Q |
| |
|
| |||||||| |||| ||| ||||||||||| | |||||||||||||||| |||| | || ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
13080875 |
ctatcaaatcggataaacttcctagtggagaccatgttagtccaaatacaaagttaatatattctttgtatgcaatgggaaggatggagcaaatatgggg |
13080974 |
T |
|
| Q |
441 |
agaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacct |
540 |
Q |
| |
|
||| || ||| |||| |||||||||||||||||| | ||||| |||||||| |||||||| || || ||||| ||||||||||| || ||| |||| || |
|
|
| T |
13080975 |
agaggattgcttggagtttaagcctgagagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaatgcaggtcca |
13081074 |
T |
|
| Q |
541 |
agaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccaaagtttcacataaaggtggtggcaggtcacccta |
640 |
Q |
| |
|
||||| ||| | || || |||||||| || |||||||||| ||||| |||||||| | ||| ||||||||||| ||||||||| ||||||| | | |
|
|
| T |
13081075 |
agaagctgtcttgggaaagatattagttttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaaggtcactcaa |
13081174 |
T |
|
| Q |
641 |
taaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt |
712 |
Q |
| |
|
||| || | | ||||| || | |||| |||| |||||||||| ||||||||| | |||||||||||||| |
|
|
| T |
13081175 |
taattcctagggtttctattctccttcgcatggaacatggctttaaggtcaaaattcgtaaaagatgcattt |
13081246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 76 - 712
Target Start/End: Complemental strand, 13086557 - 13085918
Alignment:
| Q |
76 |
aagtatcttagagacaatgcaatcactctctttttagcaggaaatggcccagttagttcagctctcagttggtttttctggcttgtttccactcatccta |
175 |
Q |
| |
|
|||||| ||||||||| |||| ||| |||||| ||||||| ||| |||||||||||| ||| |||||||| | ||||||||||| |||||| | |
|
|
| T |
13086557 |
aagtatattagagacactgcattcaatctcttagctgcaggaagtggaacagttagttcaggtctaagttggttctcttggcttgtttcaactcatttca |
13086458 |
T |
|
| Q |
176 |
ttgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagaggagaatcagattcct---tcgagagatgtggatcttgataagctagt |
272 |
Q |
| |
|
| |||||||| |||||||||||||| || |||||||| |||| |||| ||||| ||| | | || | |||| || | ||| |||| ||||| |
|
|
| T |
13086457 |
tagtggaagctaaaataattcaagagataaaagataattgtctatcacatgaggataatttggtcactaatttaagagttgaaaagcttaataaactagt |
13086358 |
T |
|
| Q |
273 |
gtacctccatggagctatatgtgaaaccttgaggctttatcctcctgtaccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagag |
372 |
Q |
| |
|
|||||| |||||||||||||||||| | ||||||||||||||||||||||| ||| |||| | |||||||||||| | |||||||||||||||||||| |
|
|
| T |
13086357 |
gtaccttcatggagctatatgtgaagcattgaggctttatcctcctgtaccatttcagcacaagtgtgcaatcaaagctgatatactacctagtggagat |
13086258 |
T |
|
| Q |
373 |
cgtgttagtccaaatacacggttattgtactctttgtatgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagat |
472 |
Q |
| |
|
||||| |||||||| |||| | |||||||||||||| |||||||||||| ||||||||||||| | || || | ||||||||||| ||||||| |
|
|
| T |
13086257 |
tatgttaaaccaaatactaagttaatatactctttgtatgcaatgggaaggatgaaacaaatatggggtaaggatcgcttcgaatttaagcccgagagat |
13086158 |
T |
|
| Q |
473 |
gggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtatgggcaaggatattagcttcat |
572 |
Q |
| |
|
|| | ||||| | |||||| ||| | ||||||||||||| |||||||||||| || ||| |||| ||| |||||||| | || || ||||||||| | | |
|
|
| T |
13086157 |
ggatatcagataaaggacatattttgcatgtaccatcttgcaagttcatagcatttaatgcaggtcctcgaagttgtcttgggaaagatattagcattgt |
13086058 |
T |
|
| Q |
573 |
tcaaatgaagatggtcgcagctgctttgttaccaaagtttcacataaaggtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacatg |
672 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||| |||||||||||| | || |||| |||||| || |||| || | ||||| ||||||| | |||| |
|
|
| T |
13086057 |
tcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcatg |
13085958 |
T |
|
| Q |
673 |
aaacatggcttgaaggtcaaagtcactaaaagatgcattt |
712 |
Q |
| |
|
||||||| || || |||||||| | ||||||||| |||| |
|
|
| T |
13085957 |
gaacatggattcaaagtcaaagttagtaaaagatgaattt |
13085918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 12963605 - 12963789
Alignment:
| Q |
28 |
ctaaaagcactaacgaaggaaggatcgggaaagggggaaatggatgagaagtatcttagagacaatgcaatcactctctttttagcaggaaatggcccag |
127 |
Q |
| |
|
||||||| |||| ||||||||||| ||||||||||||||||| |||||| ||| ||| | ||| || ||| |||||| ||||||| ||| ||| |
|
|
| T |
12963605 |
ctaaaagatctaatgaaggaaggattgggaaagggggaaatggctgagaaatatattataaacacaacactcaatctcttagctgcaggaagtggaacag |
12963704 |
T |
|
| Q |
128 |
ttagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataa |
212 |
Q |
| |
|
||||||||| ||| |||||||| || ||||||||||| |||||||||||||||||| | ||||| |||||||| || |||||||| |
|
|
| T |
12963705 |
ttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaaactaaaattattcaagagattaaagataa |
12963789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 885 - 979
Target Start/End: Complemental strand, 13006937 - 13006844
Alignment:
| Q |
885 |
atggtcaggttatgttattctctattttagaaattatttgtcgatgtaataaactacttcaagttgaattatgtttatatttttgaagttattgg |
979 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||| |||| |||||||||||| ||| |||||||| ||| |||||| ||||||||||||||| |
|
|
| T |
13006937 |
atggtctggttatgttattctctattttagcaattatatgtcaatgtaataaactgctttaagttgaactatttttata-ttttgaagttattgg |
13006844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 549 - 711
Target Start/End: Complemental strand, 13010747 - 13010582
Alignment:
| Q |
549 |
tatgggcaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccaaagtttcacataaaggtggtggcaggtcaccctataaccccg |
648 |
Q |
| |
|
||||||| | ||| |||| ||||||| |||||||||||||||||||| ||||||| || |||| |||| | ||||||| |||||| | |||||||| |
|
|
| T |
13010747 |
tatgggcgaagatcttagtttcattctaatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtcatgccataacccca |
13010648 |
T |
|
| Q |
649 |
aagctttcttttgttcttcacatgaaacatggct---tgaaggtcaaagtcactaaaagatgcatt |
711 |
Q |
| |
|
|| |||||| || |||||| ||| |||||||||| ||||||| |||||| |||||| ||||||| |
|
|
| T |
13010647 |
aaactttctattattcttcgcataaaacatggcttgatgaaggttaaagtcgctaaaaaatgcatt |
13010582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 798 - 878
Target Start/End: Complemental strand, 13006929 - 13006849
Alignment:
| Q |
798 |
gttatgttattctctattttggaaattatgtgtctatgtaataatctgctttaagttggactgtggttatattttgaagtt |
878 |
Q |
| |
|
|||||||||||||||||||| | |||||| |||| ||||||||| ||||||||||||| ||| | ||||||||||||||| |
|
|
| T |
13006929 |
gttatgttattctctattttagcaattatatgtcaatgtaataaactgctttaagttgaactatttttatattttgaagtt |
13006849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 670 - 712
Target Start/End: Original strand, 13065552 - 13065594
Alignment:
| Q |
670 |
atgaaacatggcttgaaggtcaaagtcactaaaagatgcattt |
712 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13065552 |
atgaaacatggcttgaaggtcatagtcactaaaagatgcattt |
13065594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 623 - 712
Target Start/End: Complemental strand, 13178700 - 13178611
Alignment:
| Q |
623 |
tggtggcaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt |
712 |
Q |
| |
|
|||||| ||| |||||| ||||| ||| ||||||| | |||||| ||||||||||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
13178700 |
tggtggaaggacaccctgtaacctcgaggctttctgtgcttcttcgcatgaaacatggcttgaaggttgaagtctctaaaagaagcattt |
13178611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 893 - 936
Target Start/End: Original strand, 13070638 - 13070681
Alignment:
| Q |
893 |
gttatgttattctctattttagaaattatttgtcgatgtaataa |
936 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
13070638 |
gttatgttattctctattttagatattatttgtcaatgtaataa |
13070681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 662 - 712
Target Start/End: Complemental strand, 14707904 - 14707854
Alignment:
| Q |
662 |
ttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt |
712 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| | ||||| ||||||| |
|
|
| T |
14707904 |
ttcttcgcatgaaacatggcttgaaggtcaaagtcgccaaaaggtgcattt |
14707854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 885 - 939
Target Start/End: Complemental strand, 13094010 - 13093956
Alignment:
| Q |
885 |
atggtcaggttatgttattctctattttagaaattatttgtcgatgtaataaact |
939 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||||||| | || |||||||||||| |
|
|
| T |
13094010 |
atggtctggttatgttattatttattttagaaattatgtttcaatgtaataaact |
13093956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 885 - 943
Target Start/End: Complemental strand, 13204185 - 13204127
Alignment:
| Q |
885 |
atggtcaggttatgttattctctattttagaaattatttgtcgatgtaataaactactt |
943 |
Q |
| |
|
|||||| ||||||||| |||||||||||| ||| ||| |||| |||||||||| ||||| |
|
|
| T |
13204185 |
atggtctggttatgtttttctctattttaaaaactatgtgtcaatgtaataaattactt |
13204127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 799 - 878
Target Start/End: Complemental strand, 13129535 - 13129448
Alignment:
| Q |
799 |
ttatgttattctctattttg---gaaattatgtgtctatgtaataatctgct-----ttaagttggactgtggttatattttgaagtt |
878 |
Q |
| |
|
||||||||||||||||||| |||||||||| || ||||||||| ||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
13129535 |
ttatgttattctctattttatttgaaattatgtttcaatgtaataaactgctgtaagttaagttgaactgttgttatattttgaagtt |
13129448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 76 - 217
Target Start/End: Original strand, 31396420 - 31396562
Alignment:
| Q |
76 |
aagtatcttagagacaatgcaatcactctctttttagcaggaaatggcccagttagttcagctctcagttggtttttctggcttg-tttccactcatcct |
174 |
Q |
| |
|
||||||||||||||||||| || |||| || ||||||||||||||| || |||||||| |||| |||||||||||||||||| |||| ||||||||| |
|
|
| T |
31396420 |
aagtatcttagagacaatgtgctctctcttttgttagcaggaaatggcacaattagttcaagtctcggttggtttttctggcttgttttcaactcatcct |
31396519 |
T |
|
| Q |
175 |
attgtggaagccaaaataattcaagaaatcaaagataactgtc |
217 |
Q |
| |
|
| ||||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
31396520 |
aatgtggaagccaaaattattcaagagattcaagataactgtc |
31396562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 513 - 585
Target Start/End: Original strand, 31380253 - 31380325
Alignment:
| Q |
513 |
caagttcatagctttcaatacaggacctagaagttgtatgggcaaggatattagcttcattcaaatgaagatg |
585 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||| || || ||| |||| ||||||||||| |||||| |
|
|
| T |
31380253 |
caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatg |
31380325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 418 - 587
Target Start/End: Complemental strand, 36668230 - 36668061
Alignment:
| Q |
418 |
ggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagt |
517 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||| |||||||||| || ||||| ||||| || ||| |||| | || |||||||| |||||||||| |
|
|
| T |
36668230 |
ggaagggtggaggaaatatggggagaagattgcttggaatttaaaccagagaggtgggtttctaagaaaggagggacaattcatgtaccttcttacaagt |
36668131 |
T |
|
| Q |
518 |
tcatagctttcaatacaggacctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggt |
587 |
Q |
| |
|
|||| ||||||||| | ||||| || ||| || |||| |||||||| ||||||||| | |||||||||| |
|
|
| T |
36668130 |
tcattgctttcaatgctggaccaaggagtcgtttgggtaaggatataagcttcattgagttgaagatggt |
36668061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 36668368 - 36668314
Alignment:
| Q |
280 |
catggagctatatgtgaaaccttgaggctttatcctcctgtaccttttgagcata |
334 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||| || ||||||||||||||| |
|
|
| T |
36668368 |
catggagctttatgtgaagccttaaggctttatccaccaataccttttgagcata |
36668314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 499 - 587
Target Start/End: Complemental strand, 12175822 - 12175734
Alignment:
| Q |
499 |
catgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggt |
587 |
Q |
| |
|
||||| || |||||||||||||| ||||||||| | ||||| || |||||| |||| |||||||| ||||||||| | ||||| ||||| |
|
|
| T |
12175822 |
catgttccctcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggt |
12175734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 12164516 - 12164462
Alignment:
| Q |
280 |
catggagctatatgtgaaaccttgaggctttatcctcctgtaccttttgagcata |
334 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| || ||||||||||||||| |
|
|
| T |
12164516 |
catggagctttatgtgaagccttgaggctttatccgccgataccttttgagcata |
12164462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 12176041 - 12175987
Alignment:
| Q |
280 |
catggagctatatgtgaaaccttgaggctttatcctcctgtaccttttgagcata |
334 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
12176041 |
catggagctttatgtgaagccttgaggctttatcctccggttcctttagagcata |
12175987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 431 - 587
Target Start/End: Complemental strand, 12164365 - 12164209
Alignment:
| Q |
431 |
aaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaa |
530 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| ||||| ||| | || | | |||| || | |||| || |||||||||||||| ||||| || |
|
|
| T |
12164365 |
aaatatggggagaagattgcttggaatttaagccagagaggtggatttctcaaaaaggagggatagtttatgttccttcttacaagttcattgcttttaa |
12164266 |
T |
|
| Q |
531 |
tacaggacctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggt |
587 |
Q |
| |
|
| | ||||| || |||||| |||| |||||||| ||||||||| | ||||| ||||| |
|
|
| T |
12164265 |
tgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggt |
12164209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 714
Target Start/End: Complemental strand, 12175669 - 12175607
Alignment:
| Q |
652 |
ctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcatttaa |
714 |
Q |
| |
|
|||||| ||||| | ||||||||||||||||||||||| || |||| |||||| |||||||| |
|
|
| T |
12175669 |
ctttctgttgttttacacatgaaacatggcttgaaggttaatgtcaaaaaaagaagcatttaa |
12175607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 431 - 573
Target Start/End: Original strand, 3321647 - 3321789
Alignment:
| Q |
431 |
aaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaa |
530 |
Q |
| |
|
|||| ||||||||||| ||| |||| ||||| || ||||| ||| | || ||| |||| | || || |||||||| ||||||||||| || |||||||| |
|
|
| T |
3321647 |
aaatttggggagaagattgcttggagtttaaaccagagaggtggatttctaagaaaggagaaataattcatgtaccttcttacaagtttattgctttcaa |
3321746 |
T |
|
| Q |
531 |
tacaggacctagaagttgtatgggcaaggatattagcttcatt |
573 |
Q |
| |
|
| | ||||| || |||||| |||| ||||| || || |||||| |
|
|
| T |
3321747 |
tgctggaccaaggagttgtttgggtaaggagatgagtttcatt |
3321789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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