View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5405-Insertion-3 (Length: 977)

Name: NF5405-Insertion-3
Description: NF5405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5405-Insertion-3
NF5405-Insertion-3
[»] chr1 (7 HSPs)
chr1 (599-974)||(7409888-7410265)
chr1 (6-246)||(7409447-7409687)
chr1 (381-419)||(794955-794993)
chr1 (381-420)||(18808819-18808858)
chr1 (383-420)||(1585901-1585938)
chr1 (381-415)||(7409832-7409866)
chr1 (382-415)||(26653950-26653983)
[»] chr4 (7 HSPs)
chr4 (381-420)||(21555421-21555460)
chr4 (381-415)||(23249516-23249550)
chr4 (381-415)||(27733422-27733456)
chr4 (381-415)||(36609422-36609456)
chr4 (381-420)||(827870-827909)
chr4 (381-420)||(12701079-12701118)
chr4 (381-420)||(56100147-56100186)
[»] chr7 (3 HSPs)
chr7 (381-418)||(41326084-41326121)
chr7 (381-420)||(40337075-40337114)
chr7 (381-415)||(8163652-8163686)
[»] scaffold0306 (1 HSPs)
scaffold0306 (381-420)||(13065-13104)
[»] scaffold0302 (1 HSPs)
scaffold0302 (381-420)||(18512-18551)
[»] scaffold0152 (1 HSPs)
scaffold0152 (381-420)||(22223-22262)
[»] chr8 (6 HSPs)
chr8 (381-420)||(4623859-4623898)
chr8 (381-420)||(23403639-23403678)
chr8 (381-420)||(30204657-30204696)
chr8 (381-420)||(36470144-36470183)
chr8 (381-417)||(16656022-16656058)
chr8 (381-410)||(36046538-36046567)
[»] chr3 (8 HSPs)
chr3 (381-420)||(36404231-36404270)
chr3 (381-415)||(47599410-47599444)
chr3 (381-420)||(16353498-16353537)
chr3 (381-420)||(29360523-29360562)
chr3 (381-420)||(35534523-35534562)
chr3 (381-416)||(39392002-39392037)
chr3 (381-420)||(45603025-45603064)
chr3 (381-420)||(46487310-46487349)
[»] chr2 (10 HSPs)
chr2 (381-420)||(30609695-30609734)
chr2 (381-420)||(30757193-30757232)
chr2 (381-415)||(28107497-28107531)
chr2 (381-415)||(37060088-37060122)
chr2 (381-420)||(14786275-14786314)
chr2 (381-420)||(21423406-21423445)
chr2 (381-420)||(27004490-27004529)
chr2 (381-415)||(4382253-4382287)
chr2 (381-415)||(6974526-6974560)
chr2 (381-418)||(24475941-24475978)
[»] chr5 (5 HSPs)
chr5 (381-414)||(38451048-38451081)
chr5 (381-420)||(3729342-3729381)
chr5 (381-420)||(8159079-8159118)
chr5 (381-420)||(34766893-34766932)
chr5 (381-420)||(39508325-39508364)
[»] scaffold0025 (1 HSPs)
scaffold0025 (381-420)||(67913-67952)
[»] chr6 (3 HSPs)
chr6 (381-420)||(444562-444601)
chr6 (381-420)||(2814899-2814938)
chr6 (381-415)||(6200171-6200205)


Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 599 - 974
Target Start/End: Original strand, 7409888 - 7410265
Alignment:
Q  599 tttttggtagcaaatattttttaagattgagataataattcgtcattgttaaaattcattaaccactagcttgagctcaattacttgattgcacaatatt 698  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7409888 tttttggtagcaaatatttttaaa-attgagataataattcgtcattggtaaaattcattaaccactagcttgagctcaattacttgatcgcacaatatt 7409986  T
Q  699 ttatttaattataaataatctaaaatgataaaggctaattatgagagtttgtttcaatacaatccatactttgaaagtcgtgaaaatattgttagtaaac 798  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7409987 ttatttaattataaataatctaaaatgataaaggctaattatgagagtttgtttcaatacaatccatactttgaaagtcgtgaaaatattgttagtaaac 7410086  T
Q  799 atataactcaaattaaggataaagtgaaacaaagtcttttttctaaaagaagaaccaagatttccacaaa--gaaatgtctcccaatttgtaattgtaca 896  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||    
T  7410087 atataactcaaattaaggataaagtgaaacaaagtc-tttttctaaaagaagaaccaagatttccacaaaagaaaatgtctcccaatttgtaattctaca 7410185  T
Q  897 ctg-aatccagcat-aaaggccactaatgctaccttaaaaagtgattctaccacttacctccttatctagatctctctct 974  Q
    ||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7410186 ctgaaatccagcataaaaggccactaatgctaccttaaaaagtgattccaccacttacctccttatctagatctctctct 7410265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 7409447 - 7409687
Alignment:
Q  6 cactctacttgtgcttagagtgtaatttttaatactccgagcacaaataaggggattgttgaagtattaaaacatcacactctacgaacaaatttagaga 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7409447 cactctacttgtgcttagagtgtaatttttaatactccgagcacaaataaggggattgttgaagtattaaaacatcaccctctacgaacaaatttagaga 7409546  T
Q  106 ttgttgagatttttgaagtatctatgtatgaaaaactcttagcatatatctgtaatagtttgtttttcttatttaaataaaggggacgtatttaattttt 205  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7409547 ttgttgagatttttgaagtatctatgcatgaaaaactcttagcatatatctgtaatagtttgtttttcttatttaaataaaggggacgtatttaattttt 7409646  T
Q  206 aaaacatctcaagatgtatgaactttgggtcaaattatact 246  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  7409647 aaaacatctcaagatgtatgaattttgggtcaaattatact 7409687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 381 - 419
Target Start/End: Complemental strand, 794993 - 794955
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagac 419  Q
    |||||||||||||||||||||||||||||||||||||||    
T  794993 ctaaaacatgtaaaaggataactattgtgagaagaagac 794955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 18808858 - 18808819
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  18808858 ctaaaacatataaaaggataactattgtgagaagaagact 18808819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 383 - 420
Target Start/End: Complemental strand, 1585938 - 1585901
Alignment:
Q  383 aaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    |||||||||||||||||||||||||| |||||||||||    
T  1585938 aaaacatgtaaaaggataactattgtaagaagaagact 1585901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 381 - 415
Target Start/End: Original strand, 7409832 - 7409866
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaaga 415  Q
    |||||||||||||||||||||||||| ||||||||    
T  7409832 ctaaaacatgtaaaaggataactattatgagaaga 7409866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 382 - 415
Target Start/End: Original strand, 26653950 - 26653983
Alignment:
Q  382 taaaacatgtaaaaggataactattgtgagaaga 415  Q
    ||||||||||||||||||||| ||||||||||||    
T  26653950 taaaacatgtaaaaggataaccattgtgagaaga 26653983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 21555460 - 21555421
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21555460 ctaaaacatgtaaaaggataactattgtgagaagaagact 21555421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 381 - 415
Target Start/End: Complemental strand, 23249550 - 23249516
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaaga 415  Q
    |||||||||||||||||||||||||||||||||||    
T  23249550 ctaaaacatgtaaaaggataactattgtgagaaga 23249516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 381 - 415
Target Start/End: Complemental strand, 27733456 - 27733422
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaaga 415  Q
    |||||||||||||||||||||||||||||||||||    
T  27733456 ctaaaacatgtaaaaggataactattgtgagaaga 27733422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 381 - 415
Target Start/End: Original strand, 36609422 - 36609456
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaaga 415  Q
    |||||||||||||||||||||||||||||||||||    
T  36609422 ctaaaacatgtaaaaggataactattgtgagaaga 36609456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 827909 - 827870
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  827909 ctaaaacatgtaaaaagataactattgtgagaagaggact 827870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 12701118 - 12701079
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  12701118 ctaaaacatgtaaaagaataactattgtaagaagaagact 12701079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 56100147 - 56100186
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||||||||||||||||| ||||||| ||||    
T  56100147 ctaaaacatgtaaaaggataactattgcgagaagaggact 56100186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 381 - 418
Target Start/End: Complemental strand, 41326121 - 41326084
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaaga 418  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41326121 ctaaaacatgtaaaaggataactattgtgagaagaaga 41326084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 40337075 - 40337114
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  40337075 ctaaaacatgtaaaatgataactattgtgagaagatgact 40337114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 381 - 415
Target Start/End: Original strand, 8163652 - 8163686
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaaga 415  Q
    ||||||||||||||| |||||||||||||||||||    
T  8163652 ctaaaacatgtaaaaagataactattgtgagaaga 8163686  T

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Target: scaffold0306 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 13065 - 13104
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  13065 ctaaaacatgtaaaaggataactattgtgagaagaggact 13104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 18512 - 18551
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  18512 ctaaaacatgtaaaaggataactattgtgagaagatgact 18551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 22262 - 22223
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  22262 ctaaaacatgtaaaaggataactattgtgagaagaggact 22223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 4623859 - 4623898
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  4623859 ctaaaacatgtaaaaggataactattgtgagaagatgact 4623898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 23403678 - 23403639
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  23403678 ctaaaacatgtaaaaggataactattgtgagaagaggact 23403639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 30204657 - 30204696
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  30204657 ctaaaacatgtaaaaggataactattgtgagaagatgact 30204696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 36470144 - 36470183
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  36470144 ctaaaacatgtaaaaggataactattgtgagaagatgact 36470183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 16656058 - 16656022
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaag 417  Q
    ||||||||||||||| |||||||||||||||||||||    
T  16656058 ctaaaacatgtaaaatgataactattgtgagaagaag 16656022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 381 - 410
Target Start/End: Original strand, 36046538 - 36046567
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtga 410  Q
    ||||||||||||||||||||||||||||||    
T  36046538 ctaaaacatgtaaaaggataactattgtga 36046567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 36404231 - 36404270
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  36404231 ctaaaacatgtaaaaggataactattgtgagaagaggact 36404270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 381 - 415
Target Start/End: Complemental strand, 47599444 - 47599410
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaaga 415  Q
    |||||||||||||||||||||||||||||||||||    
T  47599444 ctaaaacatgtaaaaggataactattgtgagaaga 47599410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 16353498 - 16353537
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  16353498 ctaaaacatgtaaaaggataactattgtgaaaagaggact 16353537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 29360562 - 29360523
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  29360562 ctaaaacatgtaaaaggataactactgtgagaagaggact 29360523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 35534562 - 35534523
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  35534562 ctaaaacatataaaatgataactattgtgagaagaagact 35534523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 416
Target Start/End: Complemental strand, 39392037 - 39392002
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaa 416  Q
    |||||||||||||||||||||||||||||| |||||    
T  39392037 ctaaaacatgtaaaaggataactattgtgaaaagaa 39392002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 45603064 - 45603025
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  45603064 ctaaaacatgtaaaaggataactattgtgataagatgact 45603025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 46487349 - 46487310
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  46487349 ctaaaacatataaaatgataactattgtgagaagaagact 46487310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 30609695 - 30609734
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  30609695 ctaaaacatgtaaaatgataactattgtgagaagaagact 30609734  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 30757193 - 30757232
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  30757193 ctaaaacatgtaaaaggataactattgtgagaagaggact 30757232  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 381 - 415
Target Start/End: Original strand, 28107497 - 28107531
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaaga 415  Q
    |||||||||||||||||||||||||||||||||||    
T  28107497 ctaaaacatgtaaaaggataactattgtgagaaga 28107531  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 381 - 415
Target Start/End: Original strand, 37060088 - 37060122
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaaga 415  Q
    |||||||||||||||||||||||||||||||||||    
T  37060088 ctaaaacatgtaaaaggataactattgtgagaaga 37060122  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 14786314 - 14786275
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  14786314 ctaaaacatgtaataggataactattgtgagaagaggact 14786275  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 21423445 - 21423406
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  21423445 ctaaaacatgtaataggataactattgtgagatgaagact 21423406  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 27004529 - 27004490
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  27004529 ctaaaacatataaaaggataactattgtgagaagaggact 27004490  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 381 - 415
Target Start/End: Complemental strand, 4382287 - 4382253
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaaga 415  Q
    ||||||||||||||| |||||||||||||||||||    
T  4382287 ctaaaacatgtaaaatgataactattgtgagaaga 4382253  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 381 - 415
Target Start/End: Original strand, 6974526 - 6974560
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaaga 415  Q
    ||||||||||||||| |||||||||||||||||||    
T  6974526 ctaaaacatgtaaaatgataactattgtgagaaga 6974560  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 381 - 418
Target Start/End: Original strand, 24475941 - 24475978
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaaga 418  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  24475941 ctaaaacatgtaaaaagataactattgtgataagaaga 24475978  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 414
Target Start/End: Original strand, 38451048 - 38451081
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaag 414  Q
    ||||||||||||||||||||||||||||||||||    
T  38451048 ctaaaacatgtaaaaggataactattgtgagaag 38451081  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 3729342 - 3729381
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  3729342 ctaaaacatgtaaaaggataattattgtgagaagaggact 3729381  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 8159079 - 8159118
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  8159079 ctaaaacatgtaaaaggataattattgtgagaagaggact 8159118  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 34766893 - 34766932
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  34766893 ctaaaacatgtaaaagaataactattgtgagaagaggact 34766932  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 39508325 - 39508364
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  39508325 ctaaaacatgtaaaagaataactattgtgagaaaaagact 39508364  T

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Target: scaffold0025 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 67952 - 67913
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  67952 ctaaaacatgtaaaaggataactattgttagaagaggact 67913  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 444601 - 444562
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  444601 ctaaaacatgtaataggataactattgtgagaagaggact 444562  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 2814899 - 2814938
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaagaagact 420  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  2814899 ctaaaacatgtaaaatgataactattgtgagaagaggact 2814938  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 381 - 415
Target Start/End: Original strand, 6200171 - 6200205
Alignment:
Q  381 ctaaaacatgtaaaaggataactattgtgagaaga 415  Q
    |||||| ||||||||||||||||||||||||||||    
T  6200171 ctaaaatatgtaaaaggataactattgtgagaaga 6200205  T

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