View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5405-Insertion-4 (Length: 961)
Name: NF5405-Insertion-4
Description: NF5405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5405-Insertion-4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 907; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 907; E-Value: 0
Query Start/End: Original strand, 8 - 955
Target Start/End: Complemental strand, 44011904 - 44010957
Alignment:
| Q |
8 |
attttaactatatattatacagtataatatattagtctaaggttagttgcttttgctattcatttattttccatgttctaattgttcttgaaaatttgca |
107 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44011904 |
attttaactatatattatatagtacaatatattagtctaaggttagttgcttttgctattcatttattttccatgttctaattgttcttgaaaatttgca |
44011805 |
T |
|
| Q |
108 |
acagagtttgagaaaaccaaaactattctgggcttcagcagctgctcctttaacatcagtcattctttcaaccatcttagtcttccttcttagaaataag |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44011804 |
acagagtttgaggaaaccaaaactattctgggcttcagcagctgctcctttaacatcagtcattctttcaaccatcttagtcttccttcttagaaataag |
44011705 |
T |
|
| Q |
208 |
gctcatcacatttcagttgtaagaattttacttacttcatcattactattttgagtatatcacaaatagtatcattttaataatatcnnnnnnnttgaaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44011704 |
gctcatcacatttcagttgtaagaattttacttacttcatcattactattttgagtatatcacaaatagtatcattttaataatatcaaaaaaattgaaa |
44011605 |
T |
|
| Q |
308 |
tattgttcaaattaatcaaaagtagtaataactgactgattctctgtgtattttgctgcagattgggcacttagcaaagggagttaatccaccatcagta |
407 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44011604 |
tattggtcaaattaatcaaaagtagtaataactgactgattctctgtgtattttgctgcagattgggcacttagcaaagggagttaatccaccatcagta |
44011505 |
T |
|
| Q |
408 |
aacctgttatacttcaatggtccttacttggctcttgctatcaaaacaggcattgtcacaggaatcctatctctcacagtaagcagaatcaaaacttgct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44011504 |
aacctgttatacttcaatggtccttacttggctcttgctatcaaaacaggcattgtcacaggaatcctatctctcacagtaagcagaatcaaaacttgct |
44011405 |
T |
|
| Q |
508 |
acacttttctgtcacatattacatgttacatacttaaaaataatacaaaacttaggtcctactcaatggatactatccgtgttgttccccaattataatt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44011404 |
acacttttctgtcacatattacatgttacatacttaaaaataatacaaaacttaggtcctactcaatggatactatccgtgttgttccccaattataatt |
44011305 |
T |
|
| Q |
608 |
tgtcacgcggtttaaatttttcaattaaatttaaacttaaaccgattcagtttatactattacatacacggtccatgtgttgaattgtaattagataaca |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44011304 |
tgtcacgcggtttaaatttttcaattaaatttaaacttaaaccgattcagtttatactattacatacacggtccatgtgttgaattgtaattagataaca |
44011205 |
T |
|
| Q |
708 |
gtaaaaacagtgcacaaagaactgatctagattttgtacttaaatatagcatgatgttgttttacttaactgcgactcatattccacaaaatttaccaat |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44011204 |
gtaaaaacagtgcacaaagaactgatctagattttgtacttaaatatagcatgatgttgttttacttaactgcgactcatattccacaacatttaccaat |
44011105 |
T |
|
| Q |
808 |
gtttcaggaaggaattgcagtaggtagaacatttgcagcacttaagaattaccaagtggatggaaacaaagaaatgatggctattggtattatgaacata |
907 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44011104 |
gtttcaggaaggaattgcagtaggtagaacatttgcagcacttaagaattaccaagtggatggaaacaaagaaatgatggctattggtattatgaacata |
44011005 |
T |
|
| Q |
908 |
gctggatcttgtacttcatgctatgtcacaacaggtaataactcttct |
955 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44011004 |
gctggatcttgtacttcatgctatgtcacaacaggtaataactcttct |
44010957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 809 - 942
Target Start/End: Original strand, 3176309 - 3176442
Alignment:
| Q |
809 |
tttcaggaaggaattgcagtaggtagaacatttgcagcacttaagaattaccaagtggatggaaacaaagaaatgatggctattggtattatgaacatag |
908 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3176309 |
tttcaggaaggaattgcagttggaagaacatttgcttcacttcagaactaccaagtggatggaaacaaagaaatgatggctattggtcttatgaacatag |
3176408 |
T |
|
| Q |
909 |
ctggatcttgtacttcatgctatgtcacaacagg |
942 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||| |
|
|
| T |
3176409 |
ctggctcttgttcttcatgttatgtcacaacagg |
3176442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 382 - 491
Target Start/End: Original strand, 3175753 - 3175862
Alignment:
| Q |
382 |
caaagggagttaatccaccatcagtaaacctgttatacttcaatggtccttacttggctcttgctatcaaaacaggcattgtcacaggaatcctatctct |
481 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||||||||||| |||||| | |||||||||||||||||||| || ||||||| |||||| | ||||| |
|
|
| T |
3175753 |
caaagggacttaatccaccatcatcaaacatgttatacttcagtggtccacatttggctcttgctatcaaaactggacttgtcactggaatcttgtctct |
3175852 |
T |
|
| Q |
482 |
cacagtaagc |
491 |
Q |
| |
|
||| |||||| |
|
|
| T |
3175853 |
cactgtaagc |
3175862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 812 - 943
Target Start/End: Original strand, 32958145 - 32958276
Alignment:
| Q |
812 |
caggaaggaattgcagtaggtagaacatttgcagcacttaagaattaccaagtggatggaaacaaagaaatgatggctattggtattatgaacatagctg |
911 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||||| ||| || || ||||||||||||| || ||||||||||| ||||| |||||| | | || |
|
|
| T |
32958145 |
caggaaggtattgcagtaggaaggacatttgcagctcttggaaactataaagtggatggaaataaggaaatgatggcaattgggtgtatgaatgtggttg |
32958244 |
T |
|
| Q |
912 |
gatcttgtacttcatgctatgtcacaacaggt |
943 |
Q |
| |
|
|||| | ||||| |||||||| ||||||||| |
|
|
| T |
32958245 |
gatccttcacttcctgctatgttacaacaggt |
32958276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 812 - 943
Target Start/End: Original strand, 32967558 - 32967689
Alignment:
| Q |
812 |
caggaaggaattgcagtaggtagaacatttgcagcacttaagaattaccaagtggatggaaacaaagaaatgatggctattggtattatgaacatagctg |
911 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| | | || ||| |||| |||||||| || ||||||||||| ||||| | ||||| | | || |
|
|
| T |
32967558 |
caggaaggaattgcagttgggagaacatttgcagctataagaaactacaaagttgatggaaataaggaaatgatggcaattgggttcatgaatgtggttg |
32967657 |
T |
|
| Q |
912 |
gatcttgtacttcatgctatgtcacaacaggt |
943 |
Q |
| |
|
||||| || ||||||||||| ||||||||| |
|
|
| T |
32967658 |
gatctacaacatcatgctatgttacaacaggt |
32967689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 314 - 420
Target Start/End: Complemental strand, 22377110 - 22377006
Alignment:
| Q |
314 |
tcaaattaatcaaaagtagtaataactgactgattctctgtgtattttgctgcagattgggcacttagcaaagggagttaatccaccatcagtaaacctg |
413 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||| | ||||||||| ||||||| || |||||| ||||| |||||||||||||||| |||||| || |
|
|
| T |
22377110 |
tcaaattaatcaaaagcagtaataattgattgattat--gtgtattttcttgcagatcggccacttaacaaagtgagttaatccaccatcggtaaacatg |
22377013 |
T |
|
| Q |
414 |
ttatact |
420 |
Q |
| |
|
||||||| |
|
|
| T |
22377012 |
ttatact |
22377006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 314 - 420
Target Start/End: Original strand, 30733915 - 30734019
Alignment:
| Q |
314 |
tcaaattaatcaaaagtagtaataactgactgattctctgtgtattttgctgcagattgggcacttagcaaagggagttaatccaccatcagtaaacctg |
413 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||| | ||||||||| ||||||| || |||||| ||||| |||||||||||||||| |||||| || |
|
|
| T |
30733915 |
tcaaattaatcaaaagcagtaataattgattgattat--gtgtattttcttgcagatcggccacttaacaaagtgagttaatccaccatcggtaaacatg |
30734012 |
T |
|
| Q |
414 |
ttatact |
420 |
Q |
| |
|
||||||| |
|
|
| T |
30734013 |
ttatact |
30734019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University