View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5405-Insertion-5 (Length: 528)
Name: NF5405-Insertion-5
Description: NF5405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5405-Insertion-5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 8 - 528
Target Start/End: Original strand, 28004245 - 28004764
Alignment:
| Q |
8 |
atactaaagatagactttatcatcttatattatagagggttggacaaattaattatgattatttatatgcagtggtttgaggttcttgatggactcctag |
107 |
Q |
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| T |
28004245 |
ataccaaacataaactttatcatcttatattatagagggttggacaaattaattatgattatttatatgcagtggtttgaggttcttgacggactcctag |
28004344 |
T |
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| Q |
108 |
ggaaacactggagaaacgtgggcttgggatttaattgcacatttcttttgtttggatctgttatccaacttatagcttgtgcaaggtatctactacctac |
207 |
Q |
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| T |
28004345 |
ggaaacactggagaaacgtgggcttgggatttaattgcacatttcttctgtttggatctgttatccaacttatagcttgtgcaaggtatctactacctac |
28004444 |
T |
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| Q |
208 |
tctgacttctttctttaactctttcttgattcttcattatttacttacttgtagctagctagataaataaaacaattctctgttttactacttataattt |
307 |
Q |
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| T |
28004445 |
tctgacttctttctctaactctttcttgattcttcattatttact-acttgtagctagctagatagataaaacaattctctgttttactacttataattt |
28004543 |
T |
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| Q |
308 |
tttatctaaattaaaataagcaatatcacatgcatctcttataatgaataaactactacctgcaacaccgatatttattagggtgtgcatgaatataaac |
407 |
Q |
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| T |
28004544 |
tttatctaaattaaaataagcaatatcacatgcatctcttataatgaataaactactacctgcaacaccaatatttattagggtgtgcatgaatataaac |
28004643 |
T |
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| Q |
408 |
attgttctaattaattaattttgtccatttccagcaacatatattacataaatgataatctagacaagaggacttggacttacattttcggagcttgttg |
507 |
Q |
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| T |
28004644 |
attgttctaattaattaattttgtccatttccagcaacatatattacataaatgataatctagacaagaggacttggacttacattttcggagcttgttg |
28004743 |
T |
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| Q |
508 |
tgccaccactgtttttattcc |
528 |
Q |
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| T |
28004744 |
tgccaccactgtttttattcc |
28004764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 446 - 519
Target Start/End: Original strand, 4532942 - 4533015
Alignment:
| Q |
446 |
atatattacataaatgataatctagacaagaggacttggacttacattttcggagcttgttgtgccaccactgt |
519 |
Q |
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| T |
4532942 |
atatattacataaatgataaattggacaaaaggacttggacttatatttttggagcttgttgtgctacaactgt |
4533015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 443 - 510
Target Start/End: Original strand, 35321973 - 35322040
Alignment:
| Q |
443 |
aacatatattacataaatgataatctagacaagaggacttggacttacattttcggagcttgttgtgc |
510 |
Q |
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| T |
35321973 |
aacatatactacataaatgatcacttggacaagaggacttggacttacatttttggagcttgttgtgc |
35322040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 35321822 - 35321859
Alignment:
| Q |
158 |
tttggatctgttatccaacttatagcttgtgcaaggta |
195 |
Q |
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| T |
35321822 |
tttggatctgttatccagctcatagcttgtgcaaggta |
35321859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 522
Target Start/End: Complemental strand, 32804208 - 32804129
Alignment:
| Q |
443 |
aacatatattacataaatgataatctagacaagaggacttggacttacattttcggagcttgttgtgccaccactgtttt |
522 |
Q |
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| T |
32804208 |
aacatatactacataaatgaccatttggacaagagaacttggacatacatctttggagcttgttgtgccacaacagtttt |
32804129 |
T |
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