View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5405_high_1 (Length: 686)
Name: NF5405_high_1
Description: NF5405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5405_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 446 - 668
Target Start/End: Complemental strand, 32094232 - 32094010
Alignment:
| Q |
446 |
ctcacagaatccttcagatcctctccatgtaaatcctgaagaatatcaagaaaccgatccaacaacaaagcatcatactcaataagtttatcatcttcac |
545 |
Q |
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| T |
32094232 |
ctcacagaatccttcagatcctctccatgtaaatcctgaagaatatcaagaaaccgatccaacaacaaagcatcatactcaataagtttatcatcttcac |
32094133 |
T |
|
| Q |
546 |
tcacttttgcaggaaccaattgcctaagctgtgcatcaattgatgccattttttccatcttgtttgccattgtagcaattcactctctctcacctataaa |
645 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32094132 |
tcacttttgcaggaaccaattgcctaagctgtgcatcaattgatgccattttttccatcttgtttgccattgtagcaattcactctctctcacctataaa |
32094033 |
T |
|
| Q |
646 |
aacacaaaattcaataacccttc |
668 |
Q |
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||||||||||||||||||||||| |
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| T |
32094032 |
aacacaaaattcaataacccttc |
32094010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 177 - 373
Target Start/End: Complemental strand, 32094499 - 32094305
Alignment:
| Q |
177 |
cactggatcaatgagaatttcccctctataaaggtcttttttcctgttacaagtcaaacatatcaaaaagaaatgtttccttaaaacattacaaatctat |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32094499 |
cactggatcaatgagaatttcccctctataaaggtcttttttcctgttacaagtcaaacatat-aaaaagaaatgtttccttaaaacattacaaatctat |
32094401 |
T |
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| Q |
277 |
agacttgacctaatatccaaaatctgtcnnnnnnnnncgaatttccaatcnnnnnnnctcaccaaccgaccatattgacttttagaaccaaacagtg |
373 |
Q |
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| T |
32094400 |
agaattgacctaatatccaaaatctgtcaaaaaaaatcaaatttccaatc-ttttttctcaccaaccaaccatattgacttttagaaccaaacagtg |
32094305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 32094663 - 32094554
Alignment:
| Q |
11 |
cacagatcaaagcaaactataaaaacatctgaacagaaaatcggattatttcactaaatctacagtcacaaaggcctaatagttcatgtttcatatcttt |
110 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32094663 |
cacagatcaaagcaaattataaaaatatctgaacagaaaatcggattatttcactaaatctacagtcacaaaggcctaatagttcatgtttcatatcttt |
32094564 |
T |
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| Q |
111 |
accgataacc |
120 |
Q |
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| T |
32094563 |
accgataacc |
32094554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 467 - 540
Target Start/End: Original strand, 39540818 - 39540891
Alignment:
| Q |
467 |
tctccatgtaaatcctgaagaatatcaagaaaccgatccaacaacaaagcatcatactcaataagtttatcatc |
540 |
Q |
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| T |
39540818 |
tctccatgcaaatcttgaagaatgtcaagaaacctatccaacaacaaagcatcatactccacaagtttatcatc |
39540891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 455 - 600
Target Start/End: Complemental strand, 22564847 - 22564702
Alignment:
| Q |
455 |
tccttcagatcctctccatgtaaatcctgaagaatatcaagaaaccgatccaacaacaaagcatcatactcaataagtttatcatcttcactcacttttg |
554 |
Q |
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||||| |||||||| || ||||||||||||||||||||||| || || ||||| | ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
22564847 |
tccttgagatcctcaccgtgtaaatcctgaagaatatcaaggaaacggtccaagagcaaagcatcatactcaaccagtttatcatcctcactcacttttg |
22564748 |
T |
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| Q |
555 |
caggaaccaattgcctaagctgtgcatcaattgatgccattttttc |
600 |
Q |
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| T |
22564747 |
caggaaccaattgccgaagctgagcatcgatggatgccatcttttc |
22564702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 605 - 634
Target Start/End: Original strand, 24586554 - 24586583
Alignment:
| Q |
605 |
ttgtttgccattgtagcaattcactctctc |
634 |
Q |
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| T |
24586554 |
ttgtttgccattgtagcaattcactctctc |
24586583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 540
Target Start/End: Original strand, 30911690 - 30911760
Alignment:
| Q |
470 |
ccatgtaaatcctgaagaatatcaagaaaccgatccaacaacaaagcatcatactcaataagtttatcatc |
540 |
Q |
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||||| |||||||||||||| || || || ||||| | |||||||||||||||||| | ||| |||||||| |
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| T |
30911690 |
ccatgcaaatcctgaagaatgtcgaggaaacgatcaagcaacaaagcatcatactccacaagcttatcatc |
30911760 |
T |
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