View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5406-Insertion-1 (Length: 210)
Name: NF5406-Insertion-1
Description: NF5406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5406-Insertion-1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 7 - 210
Target Start/End: Original strand, 27695857 - 27696058
Alignment:
| Q |
7 |
acactgaatcatagtaccacgtaggtcccattcattattaattcttacataattttttcaaacttctatgtgtacttcctttttctaaatgaagatattc |
106 |
Q |
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| T |
27695857 |
acactgaatcatagtaccacgtaggtcccattcattattaattcttacataattttttcaaacttctatgtgtacttcccttttctaaatgaagatactc |
27695956 |
T |
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| Q |
107 |
ctaaacgaatttcagatgcatgatgaatctcagatatatacctaacgaatttttggaaggactttacattacacggagaccttaaaatgaagggaacact |
206 |
Q |
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| T |
27695957 |
ctaaacgagtttcagatgcatgatgaatctcag--atgtacctaacgaatttttggaaggactttacattacacggagaccttaaaatgaagggaacact |
27696054 |
T |
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| Q |
207 |
cggt |
210 |
Q |
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|||| |
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| T |
27696055 |
cggt |
27696058 |
T |
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