View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5406-Insertion-3 (Length: 561)

Name: NF5406-Insertion-3
Description: NF5406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5406-Insertion-3
NF5406-Insertion-3
[»] chr4 (10 HSPs)
chr4 (8-561)||(4068527-4069080)
chr4 (277-339)||(19839175-19839237)
chr4 (301-344)||(13564989-13565032)
chr4 (277-339)||(1638443-1638505)
chr4 (301-339)||(8878903-8878941)
chr4 (301-339)||(9670558-9670596)
chr4 (301-339)||(12071982-12072020)
chr4 (277-339)||(29238419-29238481)
chr4 (289-339)||(38223518-38223568)
chr4 (262-339)||(5399590-5399667)
[»] chr5 (9 HSPs)
chr5 (301-339)||(36597419-36597457)
chr5 (289-339)||(17079415-17079465)
chr5 (301-339)||(8108939-8108977)
chr5 (277-339)||(10420331-10420393)
chr5 (301-339)||(12328305-12328343)
chr5 (301-339)||(26708664-26708702)
chr5 (301-339)||(26978398-26978436)
chr5 (277-339)||(27428091-27428153)
chr5 (290-339)||(17036491-17036540)
[»] chr7 (6 HSPs)
chr7 (259-339)||(20924037-20924117)
chr7 (277-339)||(816270-816332)
chr7 (301-344)||(9698612-9698655)
chr7 (301-339)||(15969806-15969844)
chr7 (289-339)||(32267357-32267407)
chr7 (301-339)||(33427712-33427750)
[»] scaffold0007 (1 HSPs)
scaffold0007 (277-339)||(202772-202834)
[»] chr3 (9 HSPs)
chr3 (289-339)||(31250094-31250144)
chr3 (266-326)||(10743135-10743195)
chr3 (292-339)||(31433746-31433793)
chr3 (289-339)||(1311038-1311088)
chr3 (301-339)||(11837293-11837331)
chr3 (301-339)||(18091626-18091664)
chr3 (289-339)||(20615422-20615472)
chr3 (301-339)||(21816739-21816777)
chr3 (287-339)||(23217287-23217339)
[»] scaffold0502 (1 HSPs)
scaffold0502 (303-339)||(10916-10952)
[»] chr8 (5 HSPs)
chr8 (291-339)||(24479877-24479925)
chr8 (301-339)||(13061010-13061048)
chr8 (301-339)||(19240887-19240925)
chr8 (301-339)||(19314071-19314109)
chr8 (301-339)||(25273406-25273444)
[»] chr1 (4 HSPs)
chr1 (289-333)||(6091341-6091385)
chr1 (289-339)||(12370020-12370070)
chr1 (303-339)||(9882116-9882152)
chr1 (287-339)||(50845409-50845461)
[»] scaffold0128 (1 HSPs)
scaffold0128 (301-339)||(10742-10780)
[»] chr6 (6 HSPs)
chr6 (301-339)||(11350204-11350242)
chr6 (277-339)||(12680263-12680325)
chr6 (277-339)||(14886559-14886621)
chr6 (302-339)||(6978300-6978337)
chr6 (301-337)||(343644-343680)
chr6 (303-339)||(2669333-2669369)
[»] chr2 (4 HSPs)
chr2 (301-339)||(18551332-18551370)
chr2 (277-339)||(41637612-41637674)
chr2 (303-339)||(26243400-26243436)
chr2 (303-339)||(35697475-35697511)
[»] scaffold0035 (1 HSPs)
scaffold0035 (303-339)||(74796-74832)


Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 8 - 561
Target Start/End: Complemental strand, 4069080 - 4068527
Alignment:
Q  8 taaacttctttagataccatgtcacattgtttgtgtagtaagcattttgttcggttgaaatgtttgagctacagattggttcagttggtatgaatctaat 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4069080 taaacttctttagataccatgtcacattgttcgtgtagtaagcattttgttcggttgaaatgtttgagctacagattggttcagttggtatgagtctaat 4068981  T
Q  108 cacatagaagaaatgaaatggagtagcatcccctccccttaaaatattaacttacatccatcccactgggaagaaaatttgtactatctccctctcagaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4068980 cacatagaagaaatgaaatggagtagcatcccctccccttaaaatcttaacttacatccatcccactaggaagaaaatttgtactatctccctctcagaa 4068881  T
Q  208 gtggtactagtannnnnnnnnnnnnnataagcagtgatactagtctttcatcattactaacaaaactttaattagcgatgaaaatttagaaatggaaaac 307  Q
    ||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4068880 gtggtactagtattttttatttttttataagcagtgatactagtctttcatcattactaacaaaactttaattagcgatgaaaatttagaaatggaaaac 4068781  T
Q  308 ataaaattcctctctaattctgtcactaaattatatgttgagagaattagagaagaatttaatttattatcactagttttcatcgctaattttatttttc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4068780 ataaaattcctctctaattctgtcactaaattatatgttgagagaattagagaagaatttaatttattatcactagttttcatcgctaattttatttttc 4068681  T
Q  408 tattagtgaatgtttgaagggtacctaattatatgaataactcaggaaaaaggagttgtaggtgccacttggtcattgtcttgtaattgtgtggttttta 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4068680 tattagtgaatgtttgaagggtacctaattatatgaataactcaggaaaaaggagttgtaggtgccacttggtcattgtcttgtaattgtgtggttttta 4068581  T
Q  508 ctgagtgccccttcctccccgcacatatcattataggtttaacattgcctttct 561  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4068580 ctgagtgccccttccttcccgcacatatcattataggtttaacattgcctttct 4068527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 339
Target Start/End: Original strand, 19839175 - 19839237
Alignment:
Q  277 aattagcgatgaaaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||| ||||||||||  | ||||||| |||||| |||||||||||| |||||||||||    
T  19839175 aattagcgaggaaaatttagtgagggaaaacgtaaaatccctctctaattccgtcactaaatt 19839237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 344
Target Start/End: Complemental strand, 13565032 - 13564989
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaattatatg 344  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||||    
T  13565032 ggaaaacgtaaaattcctctctaattccgtcactaaattttatg 13564989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 339
Target Start/End: Original strand, 1638443 - 1638505
Alignment:
Q  277 aattagcgatgaaaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    |||||| || ||||||||||  | ||||||||| ||||||||| ||||||| |||||||||||    
T  1638443 aattagtgaggaaaatttagtgagggaaaacatgaaattcctccctaattccgtcactaaatt 1638505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 8878903 - 8878941
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  8878903 ggaaaacatgaaatccctctctaattctgtcactaaatt 8878941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 9670596 - 9670558
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  9670596 ggaaaacgtaaaattcctctctaattccgtcactaaatt 9670558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 12071982 - 12072020
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  12071982 ggaaaacataaaatccctctctaattccgtcactaaatt 12072020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 339
Target Start/End: Original strand, 29238419 - 29238481
Alignment:
Q  277 aattagcgatgaaaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||||| ||||||||  | | ||||||||||||  || ||||||||||||||||||||    
T  29238419 aattagcgatggaaatttagtgaggaaaaacataaaatctctatctaattctgtcactaaatt 29238481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 38223518 - 38223568
Alignment:
Q  289 aaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||| | |||||||  ||||| ||||||||||||||||||||||||    
T  38223518 aaatttagagagggaaaacgcaaaatccctctctaattctgtcactaaatt 38223568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 339
Target Start/End: Original strand, 5399590 - 5399667
Alignment:
Q  262 tactaacaaaactttaattagcgatgaaaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||||||   |||||| || | ||||||||  | ||||||||| |||| |||||||||||| |||||||||||    
T  5399590 tactaacaaaacaaaaattagtgagggaaatttagtgagggaaaacatgaaatccctctctaattccgtcactaaatt 5399667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 36597457 - 36597419
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36597457 ggaaaacataaaattcctctctaattctgtcactaaatt 36597419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 17079415 - 17079465
Alignment:
Q  289 aaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||||| ||||||||| |||| |||||||||||| |||||||||||    
T  17079415 aaatttagaaagggaaaacatcaaatccctctctaattccgtcactaaatt 17079465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 8108977 - 8108939
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  8108977 ggaaaacatgaaattcctctctaattccgtcactaaatt 8108939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 339
Target Start/End: Complemental strand, 10420393 - 10420331
Alignment:
Q  277 aattagcgatgaaaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    |||||| || |||| |||||| | ||||||||| |||| ||||||||||| ||||||||||||    
T  10420393 aattagtgaggaaattttagagagggaaaacatgaaatccctctctaattttgtcactaaatt 10420331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 12328343 - 12328305
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  12328343 ggaaaacatgaaattcctctctaattccgtcactaaatt 12328305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 26708702 - 26708664
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  26708702 ggaaaacgtaaaattcctctctaattccgtcactaaatt 26708664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 26978436 - 26978398
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  26978436 ggaaaacgtaaaattcctctctaattccgtcactaaatt 26978398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 339
Target Start/End: Complemental strand, 27428153 - 27428091
Alignment:
Q  277 aattagcgatgaaaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    |||||| || ||||||||||| | ||||||| | |||| |||||||||||| |||||||||||    
T  27428153 aattagtgaggaaaatttagagagggaaaacgtgaaatccctctctaattccgtcactaaatt 27428091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 17036540 - 17036491
Alignment:
Q  290 aatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    |||||||| | |||||||  ||||| ||||||||||||||||||||||||    
T  17036540 aatttagagagggaaaacgcaaaatccctctctaattctgtcactaaatt 17036491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 339
Target Start/End: Complemental strand, 20924117 - 20924037
Alignment:
Q  259 cattactaacaaaactttaattagcgatgaaaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||| |||||   |||||| |||| ||||||||  | ||||||||| |||| ||||||||||||||||||||||||    
T  20924117 cattactaaaaaaacaaaaattagtgatggaaatttagtgagggaaaacatgaaatccctctctaattctgtcactaaatt 20924037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 339
Target Start/End: Complemental strand, 816332 - 816270
Alignment:
Q  277 aattagcgatgaaaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    |||||| || ||||||||||| ||||||||| | |||| |||||||||||| |||||||||||    
T  816332 aattagtgaggaaaatttagagatggaaaacgtgaaatccctctctaattccgtcactaaatt 816270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 344
Target Start/End: Complemental strand, 9698655 - 9698612
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaattatatg 344  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||||    
T  9698655 ggaaaacgtaaaattcctctctaattccgtcactaaattttatg 9698612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 15969806 - 15969844
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  15969806 ggaaaacatgaaattcctctctaattccgtcactaaatt 15969844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 32267357 - 32267407
Alignment:
Q  289 aaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||| | |||||||  ||||| ||||||||||||||||||||||||    
T  32267357 aaatttagagagggaaaacgcaaaatccctctctaattctgtcactaaatt 32267407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 33427712 - 33427750
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  33427712 ggaaaacatgaaattcctctctaattccgtcactaaatt 33427750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 339
Target Start/End: Original strand, 202772 - 202834
Alignment:
Q  277 aattagcgatgaaaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    |||||| || ||||||||||  | ||||||| ||||||||||||||||||| |||||||||||    
T  202772 aattagtgaggaaaatttagtgagggaaaacgtaaaattcctctctaattccgtcactaaatt 202834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 31250094 - 31250144
Alignment:
Q  289 aaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||| | |||||||| ||||| ||||||||||||||||||||||||    
T  31250094 aaatttagagagggaaaacacaaaatccctctctaattctgtcactaaatt 31250144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 10743135 - 10743195
Alignment:
Q  266 aacaaaactttaattagcgatgaaaatttagaaatggaaaacataaaattcctctctaatt 326  Q
    ||||||| || ||||| ||| ||||||||||| ||||||||||| |||||| |||||||||    
T  10743135 aacaaaaattaaattaacgacgaaaatttagagatggaaaacatgaaattcgtctctaatt 10743195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 31433746 - 31433793
Alignment:
Q  292 tttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    |||||||| ||||||| | ||||||||||||||||| |||||||||||    
T  31433746 tttagaaagggaaaacgtgaaattcctctctaattccgtcactaaatt 31433793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 1311088 - 1311038
Alignment:
Q  289 aaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||  ||||||||| |||||| |||||||||||| |||||||||||    
T  1311088 aaatttagtgatggaaaacgtaaaatccctctctaattccgtcactaaatt 1311038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 11837331 - 11837293
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  11837331 ggaaaacatgaaattcctctctaattccgtcactaaatt 11837293  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 18091664 - 18091626
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  18091664 ggaaaacataaaatccctctctaattccgtcactaaatt 18091626  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 20615472 - 20615422
Alignment:
Q  289 aaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||| | ||||||| | |||||||||||||||||||||| ||||||    
T  20615472 aaatttagagaaggaaaacgtgaaattcctctctaattctgtcattaaatt 20615422  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 21816739 - 21816777
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  21816739 ggaaaacgtaaaattcctctctaattccgtcactaaatt 21816777  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 23217339 - 23217287
Alignment:
Q  287 gaaaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||||| | ||||||| | |||| |||||||||||| |||||||||||    
T  23217339 gaaaatttagagagggaaaacgtgaaatccctctctaattccgtcactaaatt 23217287  T

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Target: scaffold0502 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 10916 - 10952
Alignment:
Q  303 aaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||| |||||||||||||||||||||||||||||    
T  10916 aaaacatgaaattcctctctaattctgtcactaaatt 10952  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 24479925 - 24479877
Alignment:
Q  291 atttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||| | ||||||| | |||||||||||||||||||||||||||||    
T  24479925 atttagagaaggaaaacgtgaaattcctctctaattctgtcactaaatt 24479877  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 13061048 - 13061010
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  13061048 ggaaaacatgaaatccctctctaattctgtcactaaatt 13061010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 19240887 - 19240925
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  19240887 ggaaaacgtaaaattcctctctaattccgtcactaaatt 19240925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 19314071 - 19314109
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  19314071 ggaaaacgtaaaattcctctctaattccgtcactaaatt 19314109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 25273444 - 25273406
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  25273444 ggaaaacgtaaaatccctctctaattctgtcactaaatt 25273406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 6091385 - 6091341
Alignment:
Q  289 aaatttagaaatggaaaacataaaattcctctctaattctgtcac 333  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||    
T  6091385 aaatttagagatggaaaacgtaaaattcctatctaattctgtcac 6091341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 12370070 - 12370020
Alignment:
Q  289 aaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    |||||||| || |||||||||||||| | |||||||||| |||||||||||    
T  12370070 aaatttagtaagggaaaacataaaatccttctctaattccgtcactaaatt 12370020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 9882152 - 9882116
Alignment:
Q  303 aaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  9882152 aaaacattaaattcctctctaattccgtcactaaatt 9882116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 50845461 - 50845409
Alignment:
Q  287 gaaaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||||  | ||||||||| |||| |||||||||||| |||||||||||    
T  50845461 gaaaatttagtgagggaaaacatgaaatccctctctaattccgtcactaaatt 50845409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 10780 - 10742
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  10780 ggaaaacgtaaaattcctctctaattccgtcactaaatt 10742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 11350204 - 11350242
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  11350204 ggaaaacataaaatcgctctctaattctgtcactaaatt 11350242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 339
Target Start/End: Complemental strand, 12680325 - 12680263
Alignment:
Q  277 aattagcgatgaaaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    |||||| || ||||||||||| | ||||||| | ||||||||||||||||| |||| ||||||    
T  12680325 aattagtgaggaaaatttagagagggaaaacgtgaaattcctctctaattccgtcattaaatt 12680263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 339
Target Start/End: Original strand, 14886559 - 14886621
Alignment:
Q  277 aattagcgatgaaaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    |||||| || ||||||||||  | ||||||||| |||| |||||||||||| |||||||||||    
T  14886559 aattagtgaggaaaatttagtgagggaaaacatcaaatccctctctaattccgtcactaaatt 14886621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 6978300 - 6978337
Alignment:
Q  302 gaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  6978300 gaaaacatgaaattcctctctaattccgtcactaaatt 6978337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 343680 - 343644
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaa 337  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  343680 ggaaaacgtaaaatccctctctaattctgtcactaaa 343644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 2669333 - 2669369
Alignment:
Q  303 aaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  2669333 aaaacgtaaaattcctctctaattccgtcactaaatt 2669369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 18551370 - 18551332
Alignment:
Q  301 ggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  18551370 ggaaaacataaaatccctctctaattccgtcactaaatt 18551332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 339
Target Start/End: Original strand, 41637612 - 41637674
Alignment:
Q  277 aattagcgatgaaaatttagaaatggaaaacataaaattcctctctaattctgtcactaaatt 339  Q
    |||||| || ||||||||||  | ||||||||| |||| |||||||||||| |||||||||||    
T  41637612 aattagtgaggaaaatttagtgagggaaaacatgaaatccctctctaattccgtcactaaatt 41637674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 26243436 - 26243400
Alignment:
Q  303 aaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  26243436 aaaacgtaaaattcctctctaattccgtcactaaatt 26243400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 35697475 - 35697511
Alignment:
Q  303 aaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  35697475 aaaacatgaaattcctctctaattccgtcactaaatt 35697511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 74832 - 74796
Alignment:
Q  303 aaaacataaaattcctctctaattctgtcactaaatt 339  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  74832 aaaacatgaaatccctctctaattctgtcactaaatt 74796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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