View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5406-Insertion-4 (Length: 322)
Name: NF5406-Insertion-4
Description: NF5406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5406-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 26389576 - 26389746
Alignment:
| Q |
8 |
aaatgaaaggaaggcataaagaaaataataaatgaaataaaccctatcacatctcatatgatagctgtcaattatgttctacgcaaataaaacaataatg |
107 |
Q |
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| T |
26389576 |
aaatgaaaggaaggcataaagaaaataataaatgaaataaaccttatcacatctcatatgatagctgtcaattatgttctacgcaaataaaacaataatg |
26389675 |
T |
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| Q |
108 |
aaaacagaattatgctttgtcattggctcgtgttcactgatgctctagcagggtaaaggtcatattaagct |
178 |
Q |
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| T |
26389676 |
aaaacagaattatgctttgtcattggctcgtgttcactgatgctctagcagggtaaaggtcatattaagct |
26389746 |
T |
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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 322
Target Start/End: Original strand, 26389830 - 26389890
Alignment:
| Q |
262 |
attttgaagtggaggagacgtacaaacataaagttacataaagcttattcaatgcatttgc |
322 |
Q |
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| T |
26389830 |
attttgaagtggaggagacgtacaaacataaagttacataaagcttattcaatgcatttgc |
26389890 |
T |
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