View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5406_high_2 (Length: 505)
Name: NF5406_high_2
Description: NF5406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5406_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 8 - 486
Target Start/End: Original strand, 39109378 - 39109856
Alignment:
| Q |
8 |
cgaagaatataaactaccgcttttcacaagctctgattatcaatctgctatggactcggtatgcagaaggattggtgtgacagataaatgcaacaagcaa |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39109378 |
cgaaaaatataaactaccgcttttcacaagctctgactatcaatctgctatggactcggtatgcagaaggattggtgtgacagataaatgcaacaagcaa |
39109477 |
T |
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| Q |
108 |
agctttcaaaatcaagttcttcggaaagggtgtgagagaattggtttaaaagtcgagtcagttgcagtgaatgcttcagaagatcattattgcggttcgt |
207 |
Q |
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| T |
39109478 |
agctttcaaaatcaagttcttcggaaagggtgtgagagaattggtttaaaagtcgagtcagttgcagtgaatgcttcagaagatcattattgcggttcgt |
39109577 |
T |
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| Q |
208 |
gctgttacggttgtagaaccggagataaaaagggtactgactcaacttggttggttgatgctgttgaaaatggcgcagttatcctcactggatgtagagc |
307 |
Q |
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| T |
39109578 |
gctgttacggttgtagaaccggagataaaaagggtactgactcaacttggttggttgatgctgttgaaaatggcgcagttatcctcactggatgtagagc |
39109677 |
T |
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| Q |
308 |
tgagaaattcataatagaaaatgggaagaatggaacaaagagaaagaattgctcaggagtgattgctgcaacaagttggaggagtaagattacaaagaaa |
407 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39109678 |
tgagaaattcataatagaaaatgggaagaatgaaacaaagagaaagaattgctcaggagtgattgctgcaacaagttggaggagtaagattacaaagaaa |
39109777 |
T |
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| Q |
408 |
ctccaaatagaatccaaagtaactatttcatcatgtggatcactacttacacctcctctaatgatttctagtggactac |
486 |
Q |
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| T |
39109778 |
ctccaaatagaatccaaagtaactatttcatcatgtggatcactacttacacctcctctaatgatttctagtggactac |
39109856 |
T |
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