View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5406_high_3 (Length: 267)
Name: NF5406_high_3
Description: NF5406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5406_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 30619121 - 30619375
Alignment:
| Q |
13 |
aatatcagttagtgaactatcaatgaataaattcaagctcaataaactaaggttcatgaatcaaattagtaatagttcatgtggtatttgcaaatgtata |
112 |
Q |
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| T |
30619121 |
aatatcagttaatgaactatcaatgaataaattcatgctcaataaactaaggttcatgaatcaaattagtaatagttcatgtggtatttgcaaatgtata |
30619220 |
T |
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| Q |
113 |
gtaccttctcaatgacgcaacgtactcttgccttgtcatatgcttcatttcttccacttctttttcataatggctaatctaaaattcattcattgttgac |
212 |
Q |
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| T |
30619221 |
gtaccttctcaatgacgcaacgtactcttgccttgtcatatgcttcatttcttccacttctttttcataatggctaatctaaaattcattcattgttgac |
30619320 |
T |
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| Q |
213 |
caacacatagaaatatccaatatcaacaagttgttatcacattaaaatataaagt |
267 |
Q |
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| T |
30619321 |
caacacatagaaatatccaatatcaacaagttgttatcacattaaaatataaagt |
30619375 |
T |
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