View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5407-Insertion-2 (Length: 876)
Name: NF5407-Insertion-2
Description: NF5407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5407-Insertion-2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 725; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 725; E-Value: 0
Query Start/End: Original strand, 5 - 869
Target Start/End: Complemental strand, 51342842 - 51341992
Alignment:
| Q |
5 |
acaagaatgttttagtgcaacatattgatctcgagggaaacaatattcttcacttggctggaaagttcgcagttgaagaaagatttggatcccctacaca |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51342842 |
acaagaatgttttagtgcaacatattgatctcgagggaaacaatattcttcacttggctggaaagttcgcagttgaagaaagatttggatcccctacaca |
51342743 |
T |
|
| Q |
105 |
tcaagctcttatttgtagtgaagagttatggtttaaggtacttatttctgtatttcttacatcagcaacataaatttcttacgagtgaaattcatgcatg |
204 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51342742 |
tcaagctcttatttgcagtgaagagttatggtttaaggtacttatttctgtatttctgacatcagcaacatcaatttcttacgagtgaaattcatgcatg |
51342643 |
T |
|
| Q |
205 |
tctcgcatgtttggctccattatatttttaaaaatggcgagacttacctgaaaattagcattaaaatttaaagacaaagcttatgctctaatccataagg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51342642 |
tctcgcatgtttggctccattatatttttaaaa-tggcgagacttacctgaaaattagcattaaaatttaaagacaaagcttatgctctaatccataagg |
51342544 |
T |
|
| Q |
305 |
tttttagggaagggaagtctcctccaaaacagatacgagtatgacacttgcaacattatattaaaatttctttctgttagactaactgtttagaaacata |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51342543 |
tttttagggaagggaagtctcctccaaaacagatacgagtatgacacttgcaacattatattaaaatttatttctgttagactaactgtttagaaacata |
51342444 |
T |
|
| Q |
405 |
tataatttgttttagtctaataatttttaactgcttgcaggaagtggagaagataactcctcctacattcaaaaacatgaaaaatcatgatggtatgacc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51342443 |
tataatttgttttagtctaataatttttaactgcttgcaggaagtggagaagataactcctcctacattcaaaaacatgaaaaatcatgatggtatgacc |
51342344 |
T |
|
| Q |
505 |
ccaatagaattgttttatgaaaaacacaaacgatcatctgaaaaagctgtagaagaagtgaatggaatatcaaatacttttatagtagttgcaacactta |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51342343 |
ccaatagaattgttttatgaaaaacacaaacgatcgtctgaaaaagctgtagaagaagtgaatggaatatcaaatacttttatagtagttgcaacactta |
51342244 |
T |
|
| Q |
605 |
ttatcacattagggatcactggagcgctcacaattcgtactaatcctgtcggtccaaaagtcaaatattattttgtgatgacatatggtacatgatattc |
704 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51342243 |
ttatcacattagggatcactggagcgctcacaattcgtactaatcctgtcggtcc-aaagtc-aatattattttgtgatgacatatggtacatgatattc |
51342146 |
T |
|
| Q |
705 |
attctatcaattggagttggaggtgagtttttgtgcatcatcagtactttttattcacctcagtttattctccctttcaacttgggaggttaaacaggag |
804 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| |||||||||| |||||||| ||||||| ||||||| |
|
|
| T |
51342145 |
attctatcaattggagttgga-gtgagtttttgtgcatcatcggtac-ttttattcacctcag-ttattctccc-ttcaactt-ggaggtt-aacagga- |
51342053 |
T |
|
| Q |
805 |
ggttatgtgtattccgaggattaccaaggatgacaatagggatacttgtttcctttatgcctctg |
869 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
51342052 |
ggttatgtgtatt-cgagga-taacaaggatgacaata-ggatacttg-ttcctttatgcctctg |
51341992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 429 - 590
Target Start/End: Complemental strand, 51318813 - 51318652
Alignment:
| Q |
429 |
ttttaactgcttgcaggaagtggagaagataactcctcctacattcaaaaacatgaaaaatcatgatggtatgaccccaatagaattgttttatgaaaaa |
528 |
Q |
| |
|
|||||| | ||||||| |||||||||||||| ||||| ||||| |||| |||| ||||| | ||||||||||||||| |||| | ||||| | || |
|
|
| T |
51318813 |
ttttaattacttgcagaaagtggagaagatagtacctcccacattaaaaagcatggaaaataaaaatggtatgaccccaacagaaatattttacaaggaa |
51318714 |
T |
|
| Q |
529 |
cacaaacgatcatctgaaaaagctgtagaagaagtgaatggaatatcaaatacttttatagt |
590 |
Q |
| |
|
|| ||| ||||| ||| ||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
51318713 |
cataaagaatcatatgagaaagctgtaactgaagtgaatggaactgcaaatacttttatagt |
51318652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 138
Target Start/End: Complemental strand, 51312630 - 51312536
Alignment:
| Q |
44 |
acaatattcttcacttggctggaaagttcgcagttgaagaaagatttggatcccctacacatcaagctcttatttgtagtgaagagttatggttt |
138 |
Q |
| |
|
|||||||||| ||||| ||||||| ||| |||| |||||||||||||||||| || | |||||| ||||||| ||||||||| |||||||| |
|
|
| T |
51312630 |
acaatattctccacttagctggaatgttagcagctgaagaaagatttggatcaccaattcatcaatttcttattcatagtgaagaactatggttt |
51312536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 51319023 - 51318957
Alignment:
| Q |
5 |
acaagaatgttttagtgcaacatattgatctcgagggaaacaatattcttcacttggctggaaagtt |
71 |
Q |
| |
|
|||| |||||||| |||||| | |||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
51319023 |
acaaaaatgttttggtgcaaattgttgatcaggagggaaacaatgttcttcacttggctggaaagtt |
51318957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University