View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5407-Insertion-3 (Length: 195)
Name: NF5407-Insertion-3
Description: NF5407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5407-Insertion-3 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 6 - 195
Target Start/End: Original strand, 3602958 - 3603147
Alignment:
| Q |
6 |
cacaaacagcaccatttttacatatttcagcataatatatactgcaactttcattgtaataatcctcagtatcgtcgatagtaattgccataacaaggag |
105 |
Q |
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| T |
3602958 |
cacaaacaacaccatttttacatatttcagcataatatatactgcaactttcattgtaataatcctcagtaccgtcgatagtaattgccataacaaggag |
3603057 |
T |
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| Q |
106 |
aactaatacaaggacagcaatggtaaatttttcaatctcacaagagtaccaaattccttccaaacatcatcacaattgagcttaactcaa |
195 |
Q |
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| T |
3603058 |
aactaatacaaggacagcaatggtaaatttttcaatctcacaagagtaccaaattccttccaaacatcatcacaattgagcttaactcaa |
3603147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 14341759 - 14341890
Alignment:
| Q |
7 |
acaaacagcaccatttttacatatttcagcataatatatactgcaactttcattgtaataatcctcagtatcgtcgatagtaattgccataacaaggaga |
106 |
Q |
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| T |
14341759 |
acaaatagcacgatttttacatatttcagcataatatatactgcaactttcattgtaataatcctcagtaccgtcgatagtaattgccataacaaggaga |
14341858 |
T |
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| Q |
107 |
actaatacaaggacagcaatggtaaatttttc |
138 |
Q |
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| T |
14341859 |
actaatacaagggaagcaatggtaaatttttc |
14341890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 33372979 - 33372934
Alignment:
| Q |
146 |
caagagtaccaaattccttccaaacatcatcacaattgagcttaac |
191 |
Q |
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| T |
33372979 |
caagagtaccagatcccttccaaacaccatcacaattaagcttaac |
33372934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 11996061 - 11996106
Alignment:
| Q |
146 |
caagagtaccaaattccttccaaacatcatcacaattgagcttaac |
191 |
Q |
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| T |
11996061 |
caagagtaccaaatcccttccaagcaccatcacaattaagcttaac |
11996106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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