View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5407_high_1 (Length: 493)
Name: NF5407_high_1
Description: NF5407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5407_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 34437557 - 34437083
Alignment:
| Q |
1 |
cctggtactttgatttataaatatagtatgatggtctggattgcatgtctatagcatttgagtaaactttcagatagtataaatagtacaaaagagtggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437557 |
cctggtactttgatttataaatatagtatgatggtctggattgcatgtctatagcatttgagtaaactttcagatagtataaatagtacaaaagagtggc |
34437458 |
T |
|
| Q |
101 |
taattcctaagtagaactgatactttagattaaagtcgtgtctagtgtctaacatgtatttgtctcatacaccaacatgctaccgacacatgtgttgact |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437457 |
taattcctaagtagaactgatact-------------gtgtctagtgtctaacatgtatttgtctcatacaccaacatgctaccgacacatgtgttgact |
34437371 |
T |
|
| Q |
201 |
tacattcaataatttaattttcttaaatgattaccaatgtctacgtattagtgtcatgtccgatgtgactcataggataatactgtgatattgcagttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437370 |
tacattcaataatttaattttcttaaatgattaccaatgtctacgtattagtgtcatgtccgatgtgactcataggataatactgtgatattgcagttga |
34437271 |
T |
|
| Q |
301 |
gtttgaatagctctggagcagtagcttcagttccaaattcatcattctttggaaccagcttaaagaaagttacctcgaggttaccaaacacaaaggtttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437270 |
gtttgaatagctctggagcagtagcttcagttccaagttcatcattctttggaaccagcttaaagaaagttacctcgaggttaccaaacacaaaggtttc |
34437171 |
T |
|
| Q |
401 |
atctggaagattcaaaattgttgctgctgagattgatgaaagcaagcaaactgacaaagacaaatggagaggtttggcctatgctact |
488 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
34437170 |
atctggaagattcaaaattgttgctgctgagattaatgaaagcaagcaaactgacaaagacagatggagaggtttggcctatgatact |
34437083 |
T |
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