View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5407_high_2 (Length: 404)

Name: NF5407_high_2
Description: NF5407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5407_high_2
NF5407_high_2
[»] chr3 (5 HSPs)
chr3 (18-306)||(38156337-38156628)
chr3 (219-287)||(48811405-48811474)
chr3 (217-287)||(46110888-46110959)
chr3 (194-286)||(28874493-28874587)
chr3 (151-287)||(45529087-45529225)
[»] chr5 (5 HSPs)
chr5 (194-291)||(12198192-12198290)
chr5 (209-281)||(2689277-2689349)
chr5 (231-281)||(24232489-24232539)
chr5 (220-275)||(2827602-2827658)
chr5 (208-287)||(30370883-30370962)
[»] chr7 (5 HSPs)
chr7 (194-292)||(47639179-47639279)
chr7 (219-287)||(46726136-46726205)
chr7 (210-287)||(36939471-36939549)
chr7 (219-287)||(2959611-2959680)
chr7 (217-260)||(4133825-4133868)
[»] chr4 (11 HSPs)
chr4 (209-261)||(12618721-12618773)
chr4 (194-287)||(53391245-53391340)
chr4 (209-286)||(5799013-5799091)
chr4 (209-276)||(11260568-11260636)
chr4 (209-255)||(14949014-14949060)
chr4 (203-287)||(31072490-31072576)
chr4 (231-287)||(36112535-36112591)
chr4 (219-255)||(48315957-48315993)
chr4 (234-287)||(13800748-13800802)
chr4 (234-287)||(54552798-54552852)
chr4 (194-288)||(41415762-41415858)
[»] chr2 (11 HSPs)
chr2 (209-295)||(20128321-20128409)
chr2 (209-288)||(39309755-39309835)
chr2 (151-282)||(24791994-24792128)
chr2 (208-275)||(35022619-35022687)
chr2 (209-287)||(24762741-24762820)
chr2 (209-287)||(24765335-24765414)
chr2 (209-255)||(2713454-2713500)
chr2 (194-255)||(34233933-34233995)
chr2 (223-292)||(37978489-37978559)
chr2 (219-276)||(39445468-39445526)
chr2 (219-287)||(814996-815065)
[»] chr8 (4 HSPs)
chr8 (209-287)||(24733172-24733251)
chr8 (234-287)||(8674459-8674513)
chr8 (203-287)||(44253807-44253892)
chr8 (231-284)||(15353819-15353873)
[»] chr1 (6 HSPs)
chr1 (209-287)||(46803515-46803594)
chr1 (219-288)||(27004060-27004130)
chr1 (197-287)||(43024927-43025019)
chr1 (234-287)||(45775857-45775911)
chr1 (234-286)||(16790297-16790350)
chr1 (215-287)||(27542860-27542933)
[»] scaffold0003 (1 HSPs)
scaffold0003 (151-287)||(353942-354080)
[»] chr6 (2 HSPs)
chr6 (146-247)||(4806466-4806568)
chr6 (234-286)||(7341412-7341465)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 38156337 - 38156628
Alignment:
Q  18 ttaacttctctatccttactctttaatttttgtttaagtattgaattcacaccaca--cactataatcacctttcttgttacttaagtttcagtaatgct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||    
T  38156337 ttaacttctctatccttactctttaatttttgtttaagtattgaattcacaccacacacactataatcacctttcttgttacttaagtttcagtaaagct 38156436  T
Q  116 tcataacattttaagcccaacaatattttataggaaaatgttaacgagtacccccatgatactatttaagaagattttatagtaaactttta-taaaata 214  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||  || ||||||||||| |||||||||||||| |||||||    
T  38156437 tcataacattttaaacccaacgatattttataggaaaatgttaacgagtacccccatgatatgatataagaagatttaatagtaaacttttattaaaata 38156536  T
Q  215 tgtataatcaatgcaatgaaatttgtaacatttgactttttaaaaaatactttttaaatttaggatccttaaaagtgtcccagttaactaaa 306  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||    
T  38156537 tgtgtaatcaatgcattgaaatttgtaacatttgactttttaaaaaatactttctaaatttaagatccttaaaagtgtcccggttaactaaa 38156628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 48811405 - 48811474
Alignment:
Q  219 taatcaatgcaatgaaatttgtaacatttgac-tttttaaaaaatactttttaaatttaggatccttaaa 287  Q
    ||||||||||| |||||||||||||||| ||| |||||||  |||| ||| |||||||||||||||||||    
T  48811405 taatcaatgcattgaaatttgtaacattagacttttttaatgaatattttctaaatttaggatccttaaa 48811474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 46110888 - 46110959
Alignment:
Q  217 tataatcaatgcaatgaaatttgtaacatttga-ctttttaaaaaatactttttaaatttaggatccttaaa 287  Q
    |||||| |||| | ||||||||||||||||| | |||||| |  |||| |||||||||||||||||||||||    
T  46110888 tataataaatgtattgaaatttgtaacatttaatctttttgaggaatattttttaaatttaggatccttaaa 46110959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 28874587 - 28874493
Alignment:
Q  194 atagtaaacttttataaaata-tgtataatcaatgcaatgaaatttgtaacatttgac-tttttaaaaaatactttttaaatttaggatccttaa 286  Q
    |||||||| |||||| ||| | ||| ||||||||||| || |||||||||||||| || |||||||| |||  ||| ||||||||| ||||||||    
T  28874587 atagtaaatttttatgaaaaactgtgtaatcaatgcattggaatttgtaacattttacttttttaaagaatgttttctaaatttagtatccttaa 28874493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 287
Target Start/End: Original strand, 45529087 - 45529225
Alignment:
Q  151 aaatgttaacgagtacccccatgatactatttaagaagattttatagtaaacttttat-aaaatatgtataatcaatgcaatgaaatttgtaacatttga 249  Q
    |||||||||||||| |||||  |||||| |||||| |   || |||||||  |||||| ||||| | | ||||||||||| ||||| ||||||| |||||    
T  45529087 aaatgttaacgagtgcccccgggatactctttaagcacccttaatagtaagtttttatgaaaatttatgtaatcaatgcactgaaacttgtaacgtttga 45529186  T
Q  250 c-tttttaaaaaatactttttaaatttaggatccttaaa 287  Q
    | ||||| || |||| ||| ||||||| |||| ||||||    
T  45529187 cttttttgaagaatattttctaaatttgggatgcttaaa 45529225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 291
Target Start/End: Complemental strand, 12198290 - 12198192
Alignment:
Q  194 atagtaaacttttat-aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttttaaaaaatactttttaaatttaggatccttaaaagtg 291  Q
    |||||||| |||||| |||||||||  ||| || ||| |||||||||||| ||||||||||||||| |||| ||||||||||| | |||||||||||||    
T  12198290 atagtaaatttttatgaaaatatgtgcaattaaagcattgaaatttgtaatatttgactttttaaacaatattttttaaatttggaatccttaaaagtg 12198192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 281
Target Start/End: Original strand, 2689277 - 2689349
Alignment:
Q  209 aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttttaaaaaatactttttaaatttaggatc 281  Q
    |||||||||||||||||  || |  ||||| |||||||||| ||||||||||||| |||||||||||| ||||    
T  2689277 aaaatatgtataatcaaaacatttgaatttataacatttgattttttaaaaaatattttttaaatttaagatc 2689349  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 24232489 - 24232539
Alignment:
Q  231 tgaaatttgtaacatttgactttttaaaaaatactttttaaatttaggatc 281  Q
    |||||||||||| |||| | |||||||| |||| |||||||||||||||||    
T  24232489 tgaaatttgtaatatttaattttttaaataatattttttaaatttaggatc 24232539  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 2827602 - 2827658
Alignment:
Q  220 aatcaatgcaatgaaatttgtaacatttgacttt-ttaaaaaatactttttaaattt 275  Q
    |||||||||| ||||| ||||||||||||||||| ||||| |||| ||| |||||||    
T  2827602 aatcaatgcattgaaacttgtaacatttgactttcttaaataatattttctaaattt 2827658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 30370883 - 30370962
Alignment:
Q  208 taaaatatgtataatcaatgcaatgaaatttgtaacatttgactttt-taaaaaatactttttaaatttaggatccttaaa 287  Q
    |||||| ||| |||||||  || |||||||| ||| ||||||||||| |||||||||||||||||||| |  |||||||||    
T  30370883 taaaatctgtgtaatcaagacattgaaatttataa-atttgacttttataaaaaatactttttaaattaaaaatccttaaa 30370962  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 47639279 - 47639179
Alignment:
Q  194 atagtaaacttttataaaatat-gtataatcaatgcaatgaaatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaaaagtg 291  Q
    ||||||||||||||||||| || || |||||||| || | ||||||||||||||| | ||||| ||| |||| ||||||||||||||||||||||| |||    
T  47639279 atagtaaacttttataaaaaattgtgtaatcaatacattaaaatttgtaacatttaatttttttaaagaatattttttaaatttaggatccttaaatgtg 47639180  T
Q  292 t 292  Q
    |    
T  47639179 t 47639179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 46726205 - 46726136
Alignment:
Q  219 taatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaa 287  Q
    ||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||| | |||||||||    
T  46726205 taatcaatgcattgaaatttgtaacatttgacttttttaaagaatattttttaaatttggtatccttaaa 46726136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 36939549 - 36939471
Alignment:
Q  210 aaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaa 287  Q
    |||| ||| |||| |||||| ||||||||||||||||||||| |||| |  |||| |||||||||||| ||||||||||    
T  36939549 aaatttgtgtaattaatgcactgaaatttgtaacatttgacttttttgaggaatattttttaaatttaagatccttaaa 36939471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 2959611 - 2959680
Alignment:
Q  219 taatcaatgcaatgaaatttgtaacatttgacttttt-aaaaaatactttttaaatttaggatccttaaa 287  Q
    ||||||||||| | |||||| |||||||| ||||||| |||||||| ||||| |||||| ||||||||||    
T  2959611 taatcaatgcattaaaatttataacatttaactttttcaaaaaatatttttttaatttatgatccttaaa 2959680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 4133825 - 4133868
Alignment:
Q  217 tataatcaatgcaatgaaatttgtaacatttgactttttaaaaa 260  Q
    ||||||||||||| ||||||||||||||||||| ||||| ||||    
T  4133825 tataatcaatgcattgaaatttgtaacatttgatttttttaaaa 4133868  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 12618721 - 12618773
Alignment:
Q  209 aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttttaaaaaa 261  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||||||||||||    
T  12618721 aaaatttgtataatcaatgcattgaaatttataacatttgactttttaaaaaa 12618773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 53391245 - 53391340
Alignment:
Q  194 atagtaaacttttataaaa-tatgtataatcaatgcaatgaaatttgtaacatttgactt-tttaaaaaatactttttaaatttaggatccttaaa 287  Q
    |||||||||| |||||||| |||||  |||||||||| |||||||||||||||||||||| ||| || |||| ||| ||||||||| || ||||||    
T  53391245 atagtaaactcttataaaaatatgtgcaatcaatgcattgaaatttgtaacatttgacttcttttaagaatattttctaaatttagtattcttaaa 53391340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 5799013 - 5799091
Alignment:
Q  209 aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaa 286  Q
    ||||| ||||||||||| ||| | |||||||||| |||||||||||||||| |||| ||| |||||||| |||||||||    
T  5799013 aaaatttgtataatcaacgcatttaaatttgtaatatttgactttttaaaagaatattttctaaatttaagatccttaa 5799091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 11260636 - 11260568
Alignment:
Q  209 aaaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaattta 276  Q
    ||||||| | |||||| |||| ||||||||||||||||||||| ||||||| |||| ||||||||||||    
T  11260636 aaaatatatgtaatcattgcattgaaatttgtaacatttgacttttttaaagaatattttttaaattta 11260568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 14949014 - 14949060
Alignment:
Q  209 aaaatatgtataatcaatgcaatgaaatttgtaacatttgacttttt 255  Q
    ||||| ||| ||||||||||| |||||||||||||||||||||||||    
T  14949014 aaaatttgtgtaatcaatgcattgaaatttgtaacatttgacttttt 14949060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 31072490 - 31072576
Alignment:
Q  203 ttttataaaata-tgtataatcaatgcaatgaaatttgtaacatttgacttttt-aaaaaatactttttaaatttaggatccttaaa 287  Q
    |||||||||| | ||| |||||||||||  | |||||||||||||||||||||| ||| |||| ||| |||||||| ||||||||||    
T  31072490 ttttataaaaaactgtgtaatcaatgcataggaatttgtaacatttgactttttcaaagaatattttctaaatttatgatccttaaa 31072576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 36112591 - 36112535
Alignment:
Q  231 tgaaatttgtaacatttgactttttaaaaaatactttttaaatttaggatccttaaa 287  Q
    ||||||||||||||||| | |||||||| |||| ||||| ||||| |||||||||||    
T  36112591 tgaaatttgtaacatttaattttttaaagaatatttttttaatttgggatccttaaa 36112535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 48315993 - 48315957
Alignment:
Q  219 taatcaatgcaatgaaatttgtaacatttgacttttt 255  Q
    ||||||||||| |||||||||||||||||||||||||    
T  48315993 taatcaatgcattgaaatttgtaacatttgacttttt 48315957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 13800748 - 13800802
Alignment:
Q  234 aatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaaa 287  Q
    ||||||||| |||||||||||| ||| |||| ||| |||||||||||||||||||    
T  13800748 aatttgtaatatttgacttttttaaagaatattttctaaatttaggatccttaaa 13800802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 54552798 - 54552852
Alignment:
Q  234 aatttgtaacatttgac-tttttaaaaaatactttttaaatttaggatccttaaa 287  Q
    ||||||||||||||||| |||||||| |||| ||| |||||||||||| ||||||    
T  54552798 aatttgtaacatttgacctttttaaagaatattttctaaatttaggattcttaaa 54552852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 288
Target Start/End: Original strand, 41415762 - 41415858
Alignment:
Q  194 atagtaaacttttataaaatat-gtataatcaatgcaatgaaatttgtaacatttgac-tttttaaaaaatactttttaaatttaggatccttaaaa 288  Q
    |||||||| |||||||||| || || ||||||||||| || |||||||||| | |||| |||||||| |||| ||| || |||| | ||||||||||    
T  41415762 atagtaaatttttataaaaaattgtttaatcaatgcattgtaatttgtaacttgtgacttttttaaagaatattttctatatttggaatccttaaaa 41415858  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 20128409 - 20128321
Alignment:
Q  209 aaaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaa-agtgtccc 295  Q
    |||||| || ||||||||||| || |||||||||||||||||| ||||||| ||||  || ||||||||||||||||||| ||||||||    
T  20128409 aaaatacgtgtaatcaatgcattggaatttgtaacatttgacttttttaaagaataaattataaatttaggatccttaaagagtgtccc 20128321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 39309835 - 39309755
Alignment:
Q  209 aaaatatgtataatcaatgcaatgaaatttgtaacatttgactt-tttaaaaaatactttttaaatttaggatccttaaaa 288  Q
    |||||||||||||||||| || ||||||||| || ||||||||| |||||| |||| ||| |||| |||| ||||||||||    
T  39309835 aaaatatgtataatcaattcattgaaatttgaaatatttgacttatttaaagaatattttctaaacttagaatccttaaaa 39309755  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 282
Target Start/End: Complemental strand, 24792128 - 24791994
Alignment:
Q  151 aaatgttaacgagtacccccatgatactatttaagaagattttatagtaaacttttataaaa--tatgtataatcaatgcaatgaaatttgtaacatttg 248  Q
    |||||||||||||| |||| | |  ||| ||||||||   || |||||||  ||||||||||  ||| | ||||||||||| || |||||||||||||||    
T  24792128 aaatgttaacgagtgcccctagggcactctttaagaaccattaatagtaagtttttataaaaattatatgtaatcaatgcattggaatttgtaacatttg 24792029  T
Q  249 act-ttttaaaaaatactttttaaatttaggatcc 282  Q
    ||| ||||||| |||| ||| ||||||| ||||||    
T  24792028 acttttttaaagaatattttctaaatttgggatcc 24791994  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 35022687 - 35022619
Alignment:
Q  208 taaaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaattt 275  Q
    |||||||||| ||||||||||| | |||||| ||| |||||||| |||||| ||||| |||||||||||    
T  35022687 taaaatatgtgtaatcaatgcattaaaatttataatatttgacttttttaagaaatattttttaaattt 35022619  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 24762741 - 24762820
Alignment:
Q  209 aaaatatgtataatcaatgcaatgaaatttgtaacatttgac-tttttaaaaaatactttttaaatttaggatccttaaa 287  Q
    ||||||||||||||||||  | || ||||||||| ||||||| |||||||  |||| ||| ||||||| |||||||||||    
T  24762741 aaaatatgtataatcaatatattggaatttgtaatatttgacttttttaaggaatattttctaaatttgggatccttaaa 24762820  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 24765414 - 24765335
Alignment:
Q  209 aaaatatgtataatcaatgcaatgaaatttgtaacatttga-ctttttaaaaaatactttttaaatttaggatccttaaa 287  Q
    ||||||||| ||||||||||| || ||||||||| ||||||  |||||||  |||| ||| ||||||| |||||||||||    
T  24765414 aaaatatgtgtaatcaatgcattggaatttgtaatatttgatttttttaaggaatattttctaaatttgggatccttaaa 24765335  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 2713454 - 2713500
Alignment:
Q  209 aaaatatgtataatcaatgcaatgaaatttgtaacatttgacttttt 255  Q
    ||||| |||||||||| |||| || ||||||||||||||||||||||    
T  2713454 aaaatctgtataatcattgcattggaatttgtaacatttgacttttt 2713500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 34233933 - 34233995
Alignment:
Q  194 atagtaaacttttata-aaatatgtataatcaatgcaatgaaatttgtaacatttgacttttt 255  Q
    |||||||| ||||||  |||| ||| ||||||||||| |||||||||||| ||||||||||||    
T  34233933 atagtaaatttttattcaaatttgtgtaatcaatgcattgaaatttgtaatatttgacttttt 34233995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 37978559 - 37978489
Alignment:
Q  223 caatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaaagtgt 292  Q
    ||||||| | |||||||||| |||||||| ||||||| |||| ||| ||||||| ||||| ||||||||||    
T  37978559 caatgcattaaaatttgtaatatttgacttttttaaagaatattttctaaatttgggatctttaaaagtgt 37978489  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 39445468 - 39445526
Alignment:
Q  219 taatcaatgcaatgaaatttgtaacatttgactttt-taaaaaatactttttaaattta 276  Q
    |||||| |||| |||||||| |||||||| |||||| ||||||||| ||||||||||||    
T  39445468 taatcagtgcattgaaatttctaacatttaacttttttaaaaaatattttttaaattta 39445526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 815065 - 814996
Alignment:
Q  219 taatcaatgcaatgaaatttgtaacatttga-ctttttaaaaaatactttttaaatttaggatccttaaa 287  Q
    ||||||||||| || ||||||| ||||||||  ||||||||||||| ||| ||||||| |||| ||||||    
T  815065 taatcaatgcattggaatttgtgacatttgatttttttaaaaaataatttctaaatttgggatgcttaaa 814996  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 24733251 - 24733172
Alignment:
Q  209 aaaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaa 287  Q
    ||||| ||| ||||||||||| || |||||||||||||||||| ||||| | |||| ||||||||||| |||||||||||    
T  24733251 aaaatttgtgtaatcaatgcactgtaatttgtaacatttgacttttttagagaatattttttaaatttgggatccttaaa 24733172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 8674513 - 8674459
Alignment:
Q  234 aatttgtaacatttgacttttt-aaaaaatactttttaaatttaggatccttaaa 287  Q
    |||||||||||||| ||||||| |||||||| ||||||||||| |||||||||||    
T  8674513 aatttgtaacatttaacttttttaaaaaatattttttaaatttgggatccttaaa 8674459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 44253892 - 44253807
Alignment:
Q  203 ttttataaaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaa 287  Q
    ||||||||||| ||| |||||||||   | |||||| |||||||||||| |||| ||||||| ||||||||||| | |||||||||    
T  44253892 ttttataaaatttgtgtaatcaatgatttaaaatttataacatttgactttttttaaaaatattttttaaatttggaatccttaaa 44253807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 15353819 - 15353873
Alignment:
Q  231 tgaaatttgtaacatttgactttt-taaaaaatactttttaaatttaggatcctt 284  Q
    |||||||||||| |||| |||||| ||||||||| ||| ||||||||||||||||    
T  15353819 tgaaatttgtaatatttcacttttttaaaaaatattttataaatttaggatcctt 15353873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 46803594 - 46803515
Alignment:
Q  209 aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttt-taaaaaatactttttaaatttaggatccttaaa 287  Q
    ||||||||| ||||||||||| ||||||| ||||| |||||||||| ||||||||||||| ||||||  | |||||||||    
T  46803594 aaaatatgtgtaatcaatgcattgaaattagtaacgtttgacttttataaaaaatactttctaaattaggaatccttaaa 46803515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 27004060 - 27004130
Alignment:
Q  219 taatcaatgcaatgaaatttgtaacatttgactttt-taaaaaatactttttaaatttaggatccttaaaa 288  Q
    ||||||||||| |||||||  |||||||| |||||| ||||||||| ||||||||||||||||| ||||||    
T  27004060 taatcaatgcattgaaattgataacatttaacttttttaaaaaatattttttaaatttaggatctttaaaa 27004130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 287
Target Start/End: Original strand, 43024927 - 43025019
Alignment:
Q  197 gtaaacttttat-aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaaa 287  Q
    ||||| |||||| |||||| || |||||| |||| |||||||||||| |||| | ||||| ||| |||| ||||||||| |||||||||||||    
T  43024927 gtaaatttttatgaaaatacgtgtaatcagtgcattgaaatttgtaatatttaatttttttaaataatattttttaaatataggatccttaaa 43025019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 45775911 - 45775857
Alignment:
Q  234 aatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaaa 287  Q
    ||||||||||||||  |||||||||  |||| |||||||||||||||||||||||    
T  45775911 aatttgtaacatttatctttttaaaggaatattttttaaatttaggatccttaaa 45775857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 16790297 - 16790350
Alignment:
Q  234 aatttgtaacatttgactttt-taaaaaatactttttaaatttaggatccttaa 286  Q
    ||||| ||||||||||||||| ||||||| | ||| ||||||||||||||||||    
T  16790297 aatttataacatttgacttttttaaaaaagattttctaaatttaggatccttaa 16790350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 27542933 - 27542860
Alignment:
Q  215 tgtataatcaatgcaatgaaatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaaa 287  Q
    |||||||||||| || || ||| ||||| |||||||||||| ||| |||| ||||||||||| | |||||||||    
T  27542933 tgtataatcaatacattggaatatgtaatatttgacttttttaaagaatattttttaaatttggtatccttaaa 27542860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 287
Target Start/End: Original strand, 353942 - 354080
Alignment:
Q  151 aaatgttaacgagtacccccatgatactatttaagaagattttatagtaaacttttataaaatatgtata--atcaatgcaatgaaatttgtaacatttg 248  Q
    |||||||||||||| || ||  || ||| |||||||| |||| ||| |||| |||||||||| || |||   |||| | || || ||||||||| |||||    
T  353942 aaatgttaacgagtgccaccgagacactttttaagaacatttaataataaatttttataaaaaatttatgttatcactacattgcaatttgtaatatttg 354041  T
Q  249 actttttaaaaaatactttttaaatttaggatccttaaa 287  Q
    ||||||||||||| |  || ||||||| |||||||||||    
T  354042 actttttaaaaaaaaaattctaaatttgggatccttaaa 354080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 4806466 - 4806568
Alignment:
Q  146 taggaaaatgttaacgagtacccccatgatactatttaagaagattttatagtaaacttttat-aaaatatgtataatcaatgcaatgaaatttgtaaca 244  Q
    |||| |||||||||||||| || ||  || ||| ||||||||   || |||||||  |||||| ||||||||| ||||||||| | ||||||||||||||    
T  4806466 tagggaaatgttaacgagttcctccgggacactctttaagaaccattaatagtaagtttttatgaaaatatgtgtaatcaatgtattgaaatttgtaaca 4806565  T
Q  245 ttt 247  Q
    |||    
T  4806566 ttt 4806568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 7341412 - 7341465
Alignment:
Q  234 aatttgtaacatttgacttttt-aaaaaatactttttaaatttaggatccttaa 286  Q
    |||| ||||||||||||||||| |||||||| ||| |||||||| |||||||||    
T  7341412 aattggtaacatttgactttttaaaaaaataatttataaatttaagatccttaa 7341465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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