View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5407_high_8 (Length: 223)
Name: NF5407_high_8
Description: NF5407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5407_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 31659121 - 31658917
Alignment:
| Q |
1 |
cccagattacagtcaatatgttaactctcctagagctagagaggttgctagtgcttgtaatgttgtcatcccgaataattgttaagttcaaataaactaa |
100 |
Q |
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| T |
31659121 |
cccagattacagtcaatatgttaactctcctagagctagagaggttgctagtgcttgtaatgttgtcatcccgaataattgttaagttcaaataaactaa |
31659022 |
T |
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| Q |
101 |
aaccatccataaggtattgtatttcttaaataaaaaagcttgatcactatatatattgtgtgtacgatatatatgtgatggtgtagctttgaacttgtga |
200 |
Q |
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| T |
31659021 |
aaccatccataaggtattgtatttcttaaataaaaaagcttgatcactatatatattgtgtgtacgatatatatgtgatggtgtagctttgaacttgtga |
31658922 |
T |
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| Q |
201 |
tatgt |
205 |
Q |
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||||| |
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| T |
31658921 |
tatgt |
31658917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 31671657 - 31671587
Alignment:
| Q |
133 |
aaaaagcttgatcactatatatattgtgtgtacgatatatatgtgatg--gtgtagctttgaacttgtgat |
201 |
Q |
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| T |
31671657 |
aaaaagcttgatcactatatatattgtgtgtacaatatatatctgatgtattgtagctttgaacctgtgat |
31671587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 31671839 - 31671749
Alignment:
| Q |
14 |
caatatgttaactctcctagagctagagaggttgctagtgcttgtaatgttgtcatcccgaataattgttaagttcaaataaactaaaaccatc |
107 |
Q |
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| T |
31671839 |
caatatgttaactctcctggttctaaaagggttgctagtgcttgcaatgttgtcatcccaaat---tgttaagttcaagtaaactaaaaccatc |
31671749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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