View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5407_low_5 (Length: 251)
Name: NF5407_low_5
Description: NF5407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5407_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 7260274 - 7260034
Alignment:
| Q |
1 |
ttcactggcaccagggtgagtgtgaagtgggataacaccagcaggaccaaggtctaaccttgctgcagagagaccaagaccattaacagctggaaattga |
100 |
Q |
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| T |
7260274 |
ttcactggcaccagggtgagtgtgaagtgggataacaccagcaggaccaaggtctaaccttgctgcagagagaccaagaccattaacagctggaaattga |
7260175 |
T |
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| Q |
101 |
gcaacaaatgcaggtgtaacggcggcgttgataatgtttgttatgtttccaggtgcaattaagccttcaaatgcaaagtcatctgaggttactgttgaag |
200 |
Q |
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| T |
7260174 |
gcaacaaatgcaggtgtaacggcggcgttgataatgtttgttatgtttccaggtgcaattaagccttcaaatgcaaagtcatctgaggttactgttgaag |
7260075 |
T |
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| Q |
201 |
ctggcttgcaagggtagcctgaaggagtgtctaagcctttg |
241 |
Q |
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| T |
7260074 |
ctggcttgcaagggtagcctgaaggagtgtctgagcctttg |
7260034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 7266052 - 7265988
Alignment:
| Q |
50 |
aggtctaaccttgctgcagagagaccaagaccattaacagctggaaattgagcaacaaatgcagg |
114 |
Q |
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| T |
7266052 |
aggtctaattttgctgctgataaaccaagaccattaacagctggaaattgattaacaaatgcagg |
7265988 |
T |
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