View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5407_low_9 (Length: 220)

Name: NF5407_low_9
Description: NF5407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5407_low_9
NF5407_low_9
[»] chr6 (42 HSPs)
chr6 (1-204)||(25071543-25071746)
chr6 (1-200)||(26974940-26975139)
chr6 (11-204)||(26811393-26811586)
chr6 (9-196)||(26635582-26635769)
chr6 (9-196)||(26741548-26741735)
chr6 (11-200)||(26848548-26848737)
chr6 (9-193)||(26949556-26949740)
chr6 (56-200)||(27214305-27214449)
chr6 (56-200)||(27234779-27234923)
chr6 (9-196)||(26959057-26959245)
chr6 (1-145)||(26617269-26617406)
chr6 (1-145)||(26723197-26723334)
chr6 (9-193)||(27665225-27665409)
chr6 (50-193)||(27698643-27698786)
chr6 (50-193)||(27724994-27725137)
chr6 (41-200)||(28234452-28234611)
chr6 (50-193)||(28781034-28781177)
chr6 (50-193)||(28786173-28786316)
chr6 (50-193)||(28792294-28792437)
chr6 (8-84)||(24715586-24715662)
chr6 (41-193)||(26802337-26802489)
chr6 (50-193)||(27229127-27229270)
chr6 (63-193)||(27604867-27604997)
chr6 (63-158)||(27531359-27531454)
chr6 (50-193)||(27611151-27611294)
chr6 (50-193)||(27718528-27718671)
chr6 (63-169)||(27593182-27593288)
chr6 (63-169)||(27678865-27678971)
chr6 (99-200)||(28098567-28098668)
chr6 (98-169)||(26622895-26622966)
chr6 (98-169)||(26728873-26728944)
chr6 (63-186)||(31284190-31284313)
chr6 (87-200)||(26936982-26937095)
chr6 (63-158)||(27338227-27338322)
chr6 (63-158)||(27398967-27399062)
chr6 (65-155)||(26055859-26055949)
chr6 (65-155)||(26075829-26075919)
chr6 (75-169)||(26893645-26893739)
chr6 (41-158)||(26646409-26646526)
chr6 (41-158)||(26752377-26752494)
chr6 (75-200)||(28185254-28185379)
chr6 (127-200)||(28325369-28325442)
[»] chr2 (1 HSPs)
chr2 (1-193)||(17993784-17993976)
[»] scaffold1254 (1 HSPs)
scaffold1254 (50-193)||(66-209)
[»] scaffold0419 (1 HSPs)
scaffold0419 (50-193)||(7420-7563)
[»] scaffold0349 (2 HSPs)
scaffold0349 (50-193)||(3571-3714)
scaffold0349 (50-193)||(14504-14647)
[»] scaffold0277 (2 HSPs)
scaffold0277 (50-193)||(13781-13924)
scaffold0277 (63-158)||(4833-4928)
[»] scaffold0038 (2 HSPs)
scaffold0038 (41-200)||(34613-34772)
scaffold0038 (127-200)||(116684-116757)
[»] chr5 (1 HSPs)
chr5 (63-155)||(16688944-16689036)
[»] chr4 (6 HSPs)
chr4 (98-158)||(18679751-18679811)
chr4 (98-181)||(18699584-18699667)
chr4 (78-186)||(5091131-5091239)
chr4 (98-158)||(18655661-18655721)
chr4 (98-158)||(18724269-18724329)
chr4 (98-158)||(18731688-18731748)
[»] chr8 (1 HSPs)
chr8 (99-157)||(31903782-31903840)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 25071746 - 25071543
Alignment:
Q  1 catagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatc 100  Q
    ||||||||||||||||||| | |||||||||||| || | |||||||||||||  |||||||||||||||||  |||||||||| |||||| |||| |||    
T  25071746 catagtctttagagaagacgataatggcaattctcgaatcttcaatgctcttgcggagcgaaggtgtgatttcgtcacctctcttaagctctttgtcatc 25071647  T
Q  101 aatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatag 200  Q
    ||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25071646 aataaaggtgtggattcctttgtcagaaagagctttataaagattaccggtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatag 25071547  T
Q  201 atga 204  Q
    ||||    
T  25071546 atga 25071543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 26975139 - 26974940
Alignment:
Q  1 catagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatc 100  Q
    ||||||||||||||||||| | ||||| ||| || |||| |||||||||||||| |||||||||||||||||  || ||| | | ||||||||||| |||    
T  26975139 catagtctttagagaagacgataatggtaatcctcgagtcttcaatgctcttgaggagcgaaggtgtgatttcgtccccttttttaagctccttgtcatc 26975040  T
Q  101 aatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatag 200  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26975039 aatgaagatgttgattcctttgtcagaaagagctttatagaggttaccggtgaaaccgaatcgagtgtcggtacctctgaaactaatgaacacgtcatag 26974940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 11 - 204
Target Start/End: Complemental strand, 26811586 - 26811393
Alignment:
Q  11 agagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtg 110  Q
    |||||| |||| ||||||||| || |||| |||||||||||||| |||||||||||||||||  |||||||||||||||||||||| ||||||||||||     
T  26811586 agagaatacaataatggcaatcctagagtgttcaatgctcttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggtt 26811487  T
Q  111 ttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatagatga 204  Q
      ||||||||||||| |||||||||||||||||| ||| || || ||  ||||||||||| |||||||||||||||||||||||||||||||||    
T  26811486 cggattcctttgtcacaaagagctttatagagatgaccggtgaagccagatcgagtgtcgatacccctgaaactaatgaacacgtcatagatga 26811393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 26635769 - 26635582
Alignment:
Q  9 ttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaagg 108  Q
    |||||||| || | ||||||||| || || | |||||||||||||| ||||||||||||||||| ||| ||| | | ||||||||||| |||||||||||    
T  26635769 ttagagaaaacgataatggcaatcctcgactcttcaatgctcttgaggagcgaaggtgtgatttcatccccttttttaagctccttgtcatcaatgaagg 26635670  T
Q  109 tgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtc 196  Q
    |||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||||||||| |||||||||||||||||||||||    
T  26635669 tgttgattcctttgtcagaaagagctttatagaggttaccggtgaaaccgaattgagtgtcggtgcccctgaaactaatgaacacgtc 26635582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 26741735 - 26741548
Alignment:
Q  9 ttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaagg 108  Q
    |||||||| || | ||||||||| || || | |||||||||||||| ||||||||||||||||| ||| ||| | | ||||||||||| |||||||||||    
T  26741735 ttagagaaaacgataatggcaatcctcgactcttcaatgctcttgaggagcgaaggtgtgatttcatccccttttttaagctccttgtcatcaatgaagg 26741636  T
Q  109 tgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtc 196  Q
    |||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||||||||| |||||||||||||||||||||||    
T  26741635 tgttgattcctttgtcagaaagagctttatagaggttaccggtgaaaccgaattgagtgtcggtgcccctgaaactaatgaacacgtc 26741548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 26848737 - 26848548
Alignment:
Q  11 agagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtg 110  Q
    |||||| |||| ||||| ||| || |||| ||||||| |||||| ||||||||||||||| | |||||| |||||||| ||||||| ||||||||||||     
T  26848737 agagaatacaagaatggaaatcctcgagtcttcaatgttcttgaggagcgaaggtgtgatctcatcaccactctgaagatccttgtcatcaatgaaggtt 26848638  T
Q  111 ttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatag 200  Q
      |||||| |||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |||||||||||||||||||| ||||||    
T  26848637 cggattccattgtcagaaagagctttatagagattaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacacatcatag 26848548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 26949740 - 26949556
Alignment:
Q  9 ttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaagg 108  Q
    ||||| ||||| | |||||||||||| || | |||||| ||||||| ||| |||||||||||||  |||||| ||||||||||||| | |||||||||||    
T  26949740 ttagaaaagacgataatggcaattctcgattcttcaattctcttgaggagtgaaggtgtgatttcgtcacctttctgaagctccttatcatcaatgaagg 26949641  T
Q  109 tgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 193  Q
    |   |||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||    
T  26949640 ttcggattcccttgtcagagagagctttatagagattaccggtgaaaccgaatcgagtgtcggtacctctgaaactaatgaacac 26949556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 56 - 200
Target Start/End: Complemental strand, 27214449 - 27214305
Alignment:
Q  56 gagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaa 155  Q
    |||||||| ||||||||  |||||||||||||||||||||| ||||||||||||   ||||||||||||| |||||||||||||||||||||| || |||    
T  27214449 gagcgaagatgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagattaccggtgaaa 27214350  T
Q  156 ccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatag 200  Q
    |||  ||||||||||||||||||||||||||||||||||||||||    
T  27214349 ccgtgtcgagtgtcggtacccctgaaactaatgaacacgtcatag 27214305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 27234779 - 27234923
Alignment:
Q  56 gagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaa 155  Q
    |||||||| ||||||||  |||||||||||||||||||||| ||||||||||||   ||||||||||||| |||||||||||||||||||||| || |||    
T  27234779 gagcgaagatgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagattaccggtgaaa 27234878  T
Q  156 ccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatag 200  Q
    |||  ||||||||||||||||||||||||||||||||||||||||    
T  27234879 ccgtgtcgagtgtcggtacccctgaaactaatgaacacgtcatag 27234923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 26959245 - 26959057
Alignment:
Q  9 ttagagaagacaacaatggcaattcttgagttttcaatgctcttgaaga-gcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaag 107  Q
    |||||||| || | ||||||||| || |||| ||||||||||||  ||| ||||||||||||||| ||| ||| | | |||||| |||| ||||||||||    
T  26959245 ttagagaaaacgataatggcaatcctcgagtcttcaatgctctttgagaagcgaaggtgtgatttcatccccttttttaagctctttgtcatcaatgaag 26959146  T
Q  108 gtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtc 196  Q
    |||| |||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||| ||||||||||||||||| |||||    
T  26959145 gtgtcgattcctttgtcagaaagagctttatagaggttaccggtgaaactgaatcgagtgtcggtgcccctgaaactaatgaagacgtc 26959057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 26617406 - 26617269
Alignment:
Q  1 catagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||||||||||||||||||||| |||    
T  26617406 catagtctttagagaagacaacaatggcaattcttgagttttcaatgc-------gagcgaaggtgtgatttcatcacctctctgaagctccttgtcatc 26617314  T
Q  101 aatgaaggtgttgattcctttgtcagaaagagctttatagagatt 145  Q
    |||||||||   || |||||||||| |||||||||||||||||||    
T  26617313 aatgaaggttcggactcctttgtcacaaagagctttatagagatt 26617269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 26723334 - 26723197
Alignment:
Q  1 catagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||||||||||||||||||||| |||    
T  26723334 catagtctttagagaagacaacaatggcaattcttgagttttcaatgc-------gagcgaaggtgtgatttcatcacctctctgaagctccttgtcatc 26723242  T
Q  101 aatgaaggtgttgattcctttgtcagaaagagctttatagagatt 145  Q
    |||||||||   || |||||||||| |||||||||||||||||||    
T  26723241 aatgaaggttcggactcctttgtcacaaagagctttatagagatt 26723197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 27665225 - 27665409
Alignment:
Q  9 ttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaagg 108  Q
    |||||||| | || ||||||||| || || | ||||||||||||   ||| |||||||||||||  |||||  |  |||||||||||| |||||||||||    
T  27665225 ttagagaatataataatggcaatcctcgattcttcaatgctcttccggagtgaaggtgtgatttcgtcaccagttggaagctccttgtcatcaatgaagg 27665324  T
Q  109 tgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 193  Q
    ||| ||||||||||||||||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||    
T  27665325 tgtggattcctttgtcagaaagagccttatagaggttaccggtgaaaccaaatcgagtgtcggtacccctgaaactaatgaacac 27665409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 27698643 - 27698786
Alignment:
Q  50 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 149  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  27698643 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 27698742  T
Q  150 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 193  Q
    |||||||||   |||||||| || ||||| ||||| ||||||||    
T  27698743 gtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacac 27698786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 27724994 - 27725137
Alignment:
Q  50 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 149  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  27724994 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 27725093  T
Q  150 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 193  Q
    |||||||||   |||||||| || ||||| ||||||| ||||||    
T  27725094 gtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacac 27725137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 28234611 - 28234452
Alignment:
Q  41 ttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatag 140  Q
    |||||||  |||||| || || ||||| |||| ||| ||||  ||||||||| ||| |||||||||||||| |||||| |||| | |||||||| |||||    
T  28234611 ttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgtgacaaagagctctatag 28234512  T
Q  141 agattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatag 200  Q
    |||||  | ||||||||  | ||||||||  |||| || ||||||| |||||||||||||    
T  28234511 agattttcggtaaaaccatagcgagtgtcactacctctaaaactaaggaacacgtcatag 28234452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 28781177 - 28781034
Alignment:
Q  50 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 149  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  28781177 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccg 28781078  T
Q  150 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 193  Q
    |||||||||   |||||||| || ||||| ||||| | ||||||    
T  28781077 gtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 28781034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 28786316 - 28786173
Alignment:
Q  50 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 149  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  28786316 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccg 28786217  T
Q  150 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 193  Q
    |||||||||   |||||||| || ||||| ||||| | ||||||    
T  28786216 gtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 28786173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 28792437 - 28792294
Alignment:
Q  50 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 149  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  28792437 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccg 28792338  T
Q  150 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 193  Q
    |||||||||   |||||||| || ||||| ||||| | ||||||    
T  28792337 gtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 28792294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 24715662 - 24715586
Alignment:
Q  8 tttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctct 84  Q
    |||||||||||||| |||||||||| | |||| ||| |||||||||| |||||||| |||||||| |||||||||||    
T  24715662 tttagagaagacaataatggcaattttcgagtcttcgatgctcttgaggagcgaagatgtgatttcatcacctctct 24715586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 41 - 193
Target Start/End: Complemental strand, 26802489 - 26802337
Alignment:
Q  41 ttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatag 140  Q
    |||||||  ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||  |||||| || |||    
T  26802489 ttcaatggccttgatgagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcaataagagccttgtag 26802390  T
Q  141 agattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 193  Q
    ||||| || ||||||||| | |||||||| || ||||| ||||| | ||||||    
T  26802389 agattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacac 26802337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 27229270 - 27229127
Alignment:
Q  50 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 149  Q
    ||||| ||| || ||||||||||  || ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  27229270 cttgacgagtgatggtgtgatttcgtctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccg 27229171  T
Q  150 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 193  Q
    |||||||||   |||||||| || ||||| ||||||| ||||||    
T  27229170 gtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacac 27229127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 193
Target Start/End: Original strand, 27604867 - 27604997
Alignment:
Q  63 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatc 162  Q
    |||||||||| ||| |||||  |||| || || | |||||||||||| |  ||||| ||||||| |||||| || |||||||| || ||||||||| |||    
T  27604867 ggtgtgatttcatctcctcttcgaagatcattttcatcaatgaaggtatgaattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtatc 27604966  T
Q  163 gagtgtcggtacccctgaaactaatgaacac 193  Q
    ||||||| || ||||| ||||||| ||||||    
T  27604967 gagtgtcagtgcccctaaaactaaggaacac 27604997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 27531359 - 27531454
Alignment:
Q  63 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 158  Q
    |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| || |||||||||    
T  27531359 ggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatagattcccttgtcagtaagagccttgtagagatttccggtaaaaccg 27531454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 27611151 - 27611294
Alignment:
Q  50 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 149  Q
    ||||| ||| || |||||||||| ||| |||||  |||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  27611151 cttgaggagtgatggtgtgatttcatctcctcttggaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 27611250  T
Q  150 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 193  Q
    |||||||||   |||||||| || ||||| ||||| | ||||||    
T  27611251 gtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 27611294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 27718528 - 27718671
Alignment:
Q  50 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 149  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  27718528 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 27718627  T
Q  150 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 193  Q
    ||||||| |   |||||||| || ||||| ||||| | ||||||    
T  27718628 gtaaaactgtgccgagtgtcagtgcccctaaaactgaggaacac 27718671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 27593182 - 27593288
Alignment:
Q  63 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatc 162  Q
    |||||||||| ||  ||||| |||||  | |||| ||||||||||||||||||||| ||||||| |||||| || |||||||| || || |||||| | |    
T  27593182 ggtgtgatttcatttcctctttgaagaccattgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattgccggtgaaaccgtacc 27593281  T
Q  163 gagtgtc 169  Q
    |||||||    
T  27593282 gagtgtc 27593288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 27678971 - 27678865
Alignment:
Q  63 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatc 162  Q
    |||||||||| ||| ||||| |||||  | || | ||||||||||||||||||||| ||||||| |||||| || |||||||| || || |||||| | |    
T  27678971 ggtgtgatttcatctcctctttgaagaccattcttatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattcccggtgaaaccgtacc 27678872  T
Q  163 gagtgtc 169  Q
    |||||||    
T  27678871 gagtgtc 27678865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 200
Target Start/End: Original strand, 28098567 - 28098668
Alignment:
Q  99 tcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcat 198  Q
    ||||||||||||  || ||||  |||| |||||||||| |||||||| |||||||||||  | ||||||||||| ||||| ||| |||  ||||||||||    
T  28098567 tcaatgaaggtgcggactcctccgtcacaaagagctttgtagagatttccagtaaaaccataccgagtgtcggtgcccctaaaattaagaaacacgtcat 28098666  T
Q  199 ag 200  Q
    ||    
T  28098667 ag 28098668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 26622966 - 26622895
Alignment:
Q  98 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtc 169  Q
    |||||||||||||| |||||| ||||||| |||||| || |||||||| ||||| |||||| | ||||||||    
T  26622966 atcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtc 26622895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 26728944 - 26728873
Alignment:
Q  98 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtc 169  Q
    |||||||||||||| |||||| ||||||| |||||| || |||||||| ||||| |||||| | ||||||||    
T  26728944 atcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtc 26728873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 186
Target Start/End: Complemental strand, 31284313 - 31284190
Alignment:
Q  63 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatc 162  Q
    |||||||||| ||| ||||| ||||| ||  | | |||||||||||||| |||||| ||||||| |||||| || |||||||| || || |||||  | |    
T  31284313 ggtgtgatttcatcccctctttgaagttcactatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagattgccggtgaaaccatacc 31284214  T
Q  163 gagtgtcggtacccctgaaactaa 186  Q
    |||||||  | |||||||||||||    
T  31284213 gagtgtcacttcccctgaaactaa 31284190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 26937095 - 26936982
Alignment:
Q  87 agctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaa 186  Q
    |||||||||| |||||||||||||   |||||    ||| |||||||||| || |||| |||| |||||  ||| ||||||||||| || |||||||| |    
T  26937095 agctccttgtcatcaatgaaggtgcgaattccacaatcacaaagagctttgtaaagatgaccaataaaatggaagcgagtgtcggtgcctctgaaactga 26936996  T
Q  187 tgaacacgtcatag 200  Q
     |||||||||||||    
T  26936995 ggaacacgtcatag 26936982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 27338227 - 27338322
Alignment:
Q  63 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 158  Q
    |||||| ||| ||| ||||| | ||| || |||| |||||||||||| |||||||| ||||||  |||||| || |||||||| || |||||||||    
T  27338227 ggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccg 27338322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 27398967 - 27399062
Alignment:
Q  63 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 158  Q
    |||||| ||| ||| ||||| | ||| || |||| |||||||||||| |||||||| ||||||  |||||| || |||||||| || |||||||||    
T  27398967 ggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccg 27399062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 26055949 - 26055859
Alignment:
Q  65 tgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaa 155  Q
    |||||||| ||| ||||| ||||| || || | ||||||||| || || ||||| ||||||  |||||| |||||||||||||| ||||||    
T  26055949 tgtgatttcatctcctctttgaagatcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaa 26055859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 26075919 - 26075829
Alignment:
Q  65 tgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaa 155  Q
    |||||||| ||| ||||| ||||| || || | ||||||||| || || ||||| ||||||  |||||| |||||||||||||| ||||||    
T  26075919 tgtgatttcatctcctctttgaagatcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaa 26075829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 26893645 - 26893739
Alignment:
Q  75 tcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtc 169  Q
    |||||||| ||||||||  | | ||||||||||||||  |||||  | ||| ||||||||||||| |||| ||| |||||||| || ||||||||    
T  26893645 tcacctctatgaagctctgtatcatcaatgaaggtgtgaattccactatcacaaagagctttataaagatgacccgtaaaaccaaaacgagtgtc 26893739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 26646526 - 26646409
Alignment:
Q  41 ttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatag 140  Q
    |||||||  ||||| ||| || |||||||||| ||| ||||||| ||| ||    | ||||||||||||||  ||||| ||||||| |||||| || |||    
T  26646526 ttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatcacaatcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtag 26646427  T
Q  141 agattaccagtaaaaccg 158  Q
    ||||  ||||||||||||    
T  26646426 agatgtccagtaaaaccg 26646409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 26752494 - 26752377
Alignment:
Q  41 ttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatag 140  Q
    |||||||  ||||| ||| || |||||||||| ||| ||||||| ||| ||    | ||||||||||||||  ||||| ||||||| |||||| || |||    
T  26752494 ttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatcacaatcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtag 26752395  T
Q  141 agattaccagtaaaaccg 158  Q
    ||||  ||||||||||||    
T  26752394 agatgtccagtaaaaccg 26752377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 200
Target Start/End: Complemental strand, 28185379 - 28185254
Alignment:
Q  75 tcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtac 174  Q
    |||||||  ||||||||  ||| ||| ||||||||   |||||| |||||| |||||||| ||| |||||| ||||||||||   | ||||||||  |||    
T  28185379 tcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctattgagatttccagtaaaacgataacgagtgtcactac 28185280  T
Q  175 ccctgaaactaatgaacacgtcatag 200  Q
    | || || |||| |||||||||||||    
T  28185279 ctctaaagctaaggaacacgtcatag 28185254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 28325442 - 28325369
Alignment:
Q  127 aaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatag 200  Q
    ||||| |||| |||||||| |||||||||||  | ||||||||  |||| || ||||||| |||||||||||||    
T  28325442 aaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaacacgtcatag 28325369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 17993784 - 17993976
Alignment:
Q  1 catagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatc 100  Q
    ||||||| || |||||||| | ||| ||||||||||||| |||||||||||||| |||||| |||||||||| |||||||||||||||||| |||| |||    
T  17993784 catagtcctttgagaagacgataatcgcaattcttgagtcttcaatgctcttgaggagcgacggtgtgatttcatcacctctctgaagctctttgtcatc 17993883  T
Q  101 aatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 193  Q
     ||||||||    ||||| ||||||||||||||||||||||||||||| || |||||  ||||||| ||||||||||||||||||||||||||    
T  17993884 gatgaaggttcgaattcccttgtcagaaagagctttatagagattaccggtgaaaccatatcgagtatcggtacccctgaaactaatgaacac 17993976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 66 - 209
Alignment:
Q  50 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 149  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  66 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccg 165  T
Q  150 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 193  Q
    |||||||||   |||||||| || ||||| ||||||| ||||||    
T  166 gtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacac 209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 7563 - 7420
Alignment:
Q  50 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 149  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  7563 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccg 7464  T
Q  150 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 193  Q
    |||||||||   |||||||| || ||||| ||||||| ||||||    
T  7463 gtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacac 7420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 3571 - 3714
Alignment:
Q  50 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 149  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  3571 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 3670  T
Q  150 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 193  Q
    |||||||||   |||||||| || ||||| ||||||| ||||||    
T  3671 gtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacac 3714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 14504 - 14647
Alignment:
Q  50 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 149  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  14504 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 14603  T
Q  150 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 193  Q
    |||||||||   |||||||| || ||||| ||||| ||||||||    
T  14604 gtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacac 14647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 13781 - 13924
Alignment:
Q  50 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 149  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  13781 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccg 13880  T
Q  150 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 193  Q
    |||||||||   |||||||| || ||||| ||||| | ||||||    
T  13881 gtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 13924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 4833 - 4928
Alignment:
Q  63 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 158  Q
    |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| || |||||||||    
T  4833 ggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccg 4928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 34772 - 34613
Alignment:
Q  41 ttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatag 140  Q
    |||||||  |||||| || || ||||| |||| ||| ||||  ||||||||| ||| |||||||||||||| |||||| |||| | |||||||| |||||    
T  34772 ttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgtgacaaagagctctatag 34673  T
Q  141 agattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatag 200  Q
    |||||  | ||||||||  | ||||||||  |||| || ||||||| |||||||||||||    
T  34672 agattttcggtaaaaccatagcgagtgtcactacctctaaaactaaggaacacgtcatag 34613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 116757 - 116684
Alignment:
Q  127 aaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacacgtcatag 200  Q
    ||||| |||| |||||||| |||||||||||  | ||||||||  |||| || ||||||| |||||||||||||    
T  116757 aaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaacacgtcatag 116684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 16689036 - 16688944
Alignment:
Q  63 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaa 155  Q
    ||||||||||| |||||||||||||| ||||||| ||||||||||     |||||| |||||| | |||||||| || |||||||||||||||    
T  16689036 ggtgtgattttgtcacctctctgaagttccttgtcatcaatgaagacacggattcccttgtcacatagagctttgtacagattaccagtaaaa 16688944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 18679751 - 18679811
Alignment:
Q  98 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 158  Q
    |||||||||||||| |||||||||||||| |||||| || ||||||| |||||||||||||    
T  18679751 atcaatgaaggtgtggattcctttgtcagtaagagccttgtagagatgaccagtaaaaccg 18679811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 18699584 - 18699667
Alignment:
Q  98 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaa 181  Q
    |||||||||||||| |||||| ||||||| ||||||||| |||||||  ||||||||||||   |||||||| || ||||||||    
T  18699584 atcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatggccagtaaaaccgtcacgagtgtcagtgcccctgaa 18699667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 5091131 - 5091239
Alignment:
Q  78 cctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccc 177  Q
    |||| |||||||||  ||| ||||||||||||||  ||||| ||| ||   ||||||| ||||||||| |||||||||||| | ||||||||||| || |    
T  5091131 cctcgctgaagctctctgtcatcaatgaaggtgtgaattcccttgacacgtagagcttcatagagatttccagtaaaaccgtaacgagtgtcggtgcctc 5091230  T
Q  178 tgaaactaa 186  Q
    | |||||||    
T  5091231 taaaactaa 5091239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 18655661 - 18655721
Alignment:
Q  98 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 158  Q
    |||||||||||||| |||||| ||||||| ||||||||| |||||||  ||||||||||||    
T  18655661 atcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatgcccagtaaaaccg 18655721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 18724269 - 18724329
Alignment:
Q  98 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 158  Q
    |||||||||||||| |||||| ||||||| |||||| || ||||||| |||||||||||||    
T  18724269 atcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatgaccagtaaaaccg 18724329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 18731688 - 18731748
Alignment:
Q  98 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 158  Q
    |||||||||||||| |||||| ||||||| ||||||| | |||||||  ||||||||||||    
T  18731688 atcaatgaaggtgtggattcccttgtcagtaagagctctgtagagatggccagtaaaaccg 18731748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 31903840 - 31903782
Alignment:
Q  99 tcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaacc 157  Q
    ||||| ||||||| |||||| || ||| |||||||||| |||||||| |||||||||||    
T  31903840 tcaataaaggtgtggattcccttatcataaagagctttgtagagatttccagtaaaacc 31903782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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