View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5408-Insertion-1 (Length: 802)

Name: NF5408-Insertion-1
Description: NF5408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5408-Insertion-1
NF5408-Insertion-1
[»] chr2 (7 HSPs)
chr2 (322-702)||(17230472-17230851)
chr2 (8-328)||(17231697-17231996)
chr2 (622-702)||(45537197-45537277)
chr2 (622-701)||(31993179-31993258)
chr2 (611-686)||(34950988-34951063)
chr2 (623-701)||(1116062-1116140)
chr2 (620-701)||(7940641-7940723)
[»] chr6 (1 HSPs)
chr6 (51-130)||(8275034-8275113)
[»] chr3 (10 HSPs)
chr3 (622-702)||(31764297-31764377)
chr3 (622-702)||(21972067-21972147)
chr3 (622-702)||(21994498-21994578)
chr3 (622-702)||(22154783-22154863)
chr3 (622-701)||(46469459-46469538)
chr3 (620-701)||(39587496-39587577)
chr3 (611-692)||(41192865-41192946)
chr3 (620-696)||(16479157-16479233)
chr3 (620-696)||(49324814-49324890)
chr3 (622-701)||(49165205-49165284)
[»] chr8 (11 HSPs)
chr8 (620-701)||(628340-628421)
chr8 (620-701)||(585502-585583)
chr8 (620-696)||(225632-225708)
chr8 (620-696)||(702045-702121)
chr8 (620-696)||(739255-739331)
chr8 (620-696)||(863150-863226)
chr8 (622-701)||(13545352-13545431)
chr8 (622-701)||(13679042-13679121)
chr8 (622-701)||(28249701-28249779)
chr8 (626-701)||(43097643-43097718)
chr8 (620-701)||(31700127-31700208)
[»] scaffold0209 (1 HSPs)
scaffold0209 (620-701)||(14263-14344)
[»] chr7 (4 HSPs)
chr7 (584-701)||(6900715-6900830)
chr7 (622-701)||(24686303-24686382)
chr7 (620-696)||(114251-114327)
chr7 (622-696)||(38247237-38247311)
[»] scaffold0121 (1 HSPs)
scaffold0121 (622-702)||(46384-46464)
[»] chr4 (11 HSPs)
chr4 (611-701)||(4049093-4049184)
chr4 (622-701)||(38550368-38550447)
chr4 (621-701)||(5419785-5419865)
chr4 (621-701)||(18559500-18559580)
chr4 (620-696)||(44109531-44109607)
chr4 (622-701)||(16452899-16452978)
chr4 (611-696)||(35159682-35159767)
chr4 (620-696)||(1603746-1603822)
chr4 (621-701)||(49375260-49375340)
chr4 (620-696)||(51890122-51890198)
chr4 (620-696)||(55609635-55609711)
[»] chr1 (9 HSPs)
chr1 (622-702)||(27217770-27217850)
chr1 (620-701)||(49852673-49852755)
chr1 (622-701)||(41087374-41087453)
chr1 (622-701)||(41092142-41092221)
chr1 (92-129)||(1250842-1250879)
chr1 (621-697)||(41899448-41899524)
chr1 (621-697)||(50891506-50891582)
chr1 (611-678)||(6603215-6603282)
chr1 (622-701)||(12529333-12529412)
[»] chr5 (4 HSPs)
chr5 (611-697)||(25976226-25976312)
chr5 (620-701)||(26280016-26280097)
chr5 (622-701)||(27115261-27115340)
chr5 (623-701)||(2605692-2605770)


Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 322 - 702
Target Start/End: Complemental strand, 17230851 - 17230472
Alignment:
Q  322 aacacaggaattgccaaagatcgaaaagaagacaaagttagttcatgttaatagaggtagaagtatcagaacttaacttcccagagcaactacagatggt 421  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17230851 aacacaagaattgccaaagatcgaaaagaagacaaagttagttcatgttaatagaggtagaagtatcagaacttaacttcccagagcaactacagatggt 17230752  T
Q  422 tgtggatatgagcattttcagatttttagggggtcttaacagcaatttccaagcataataggcaaagcccattttttatggcagatcgcaattgagtaaa 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  17230751 tgtggatatgagcattttcagatttttagggggtcttaacagcaatttccaagcataataggcaaagcccattttttatggcagatcgcaattgagtaga 17230652  T
Q  522 atttannnnnnnagtattactttccctaccctatggatttctaccgcgccctannnnnnnnccgaaaatatccttgtccgggttattggttccgaacagc 621  Q
    |||||       ||||||||||| || ||||||||||||||||||||||||||        |||||||||||||||||||| ||||||||||| ||||||    
T  17230651 attta-ttttttagtattacttttcccaccctatggatttctaccgcgccctattttttttccgaaaatatccttgtccggattattggttccaaacagc 17230553  T
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagctttg 702  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||    
T  17230552 attgttagtattttccagatttatccggattttaaaatctggaatgatcttttccaagaactttttcaattttaagctttg 17230472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 8 - 328
Target Start/End: Complemental strand, 17231996 - 17231697
Alignment:
Q  8 gaactatcataggagtttctagttatgatcttaattccatagcagcatagatgtttaatgtaataggtgaaaactgacatttaacaagtgaaaacagaag 107  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||                     ||||||||||||||    
T  17231996 gaactatcataggagtttctaattatgatcttaattccatagcagcatagatgtttaatgtaata---------------------agtgaaaacagaag 17231918  T
Q  108 aacaaaatgtgtagaaatgtaccaagagaatcagaaaggaggaacttttggatgaagttgaaatctgttttgaaaaagatagaggataaggtataaggtt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17231917 aacaaaatgtgtagaaatgtaccaagagaatcagaaaggaggaacttttggatgaagttgaaatctgttttgaaaaatatagaggataaggtataaggtt 17231818  T
Q  208 ccttcatgttgatcacaatcgaatctatctagcattccaaaatcattactattttttatcttgcataatatgatgatcacaaaatatgctagagtctaaa 307  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17231817 ccttcatgttgatcataatcgaatctatctagcattccaaaatcattactattttttatgttgcataatatgatgatcacaaaatatgctagagtctaaa 17231718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 622 - 702
Target Start/End: Complemental strand, 45537277 - 45537197
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagctttg 702  Q
    ||||||| | |||| ||||||||||||||||||||| || |||||| || ||||||| ||||||| |||||||||||||||    
T  45537277 attgttaatgttttccagatttatccggattttaaattccggaatggtctttttccaaaacttttacaattttaagctttg 45537197  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 622 - 701
Target Start/End: Original strand, 31993179 - 31993258
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||| ||||| ||||| |||||||||||||||||| |||||||   ||||| ||||||||| ||||||||||||||    
T  31993179 attgttagaattttgcagatgtatccggattttaaaatccggaatgagttttttcaagaacttttacaattttaagcttt 31993258  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 611 - 686
Target Start/End: Complemental strand, 34951063 - 34950988
Alignment:
Q  611 ttccgaacagcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttt 686  Q
    |||||||| |||||| ||| | ||| |||| |||||||||||||||| || |||||| || |||||||||||||||    
T  34951063 ttccgaactgcattgataggaatttccagacttatccggattttaaactccggaatggtctttttccagaactttt 34950988  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 623 - 701
Target Start/End: Complemental strand, 1116140 - 1116062
Alignment:
Q  623 ttgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    ||||||| ||||| ||||| |||||||||||||||||   ||||| |  ||||||||||||||| | ||||||||||||    
T  1116140 ttgttagaattttacagatgtatccggattttaaaattcagaatggtgtttttccagaacttttacgattttaagcttt 1116062  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 701
Target Start/End: Original strand, 7940641 - 7940723
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatga-tccttttccagaactttttcaattttaagcttt 701  Q
    |||||||||| |||||  |||| ||| |||||||||||||| ||||||| |  ||||||| ||||||| ||||||||||||||    
T  7940641 gcattgttagaattttgtagatgtattcggattttaaaatccggaatgagtttttttccataacttttacaattttaagcttt 7940723  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 8275113 - 8275034
Alignment:
Q  51 agcatagatgtttaatgtaataggtgaaaactgacatttaacaagtgaaaacagaagaacaaaatgtgtagaaatgtacc 130  Q
    |||||| |||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8275113 agcatatatgtctaatgtaataagtgaaaactgacatttaccaagtgaaaacagaagaacaaaatgtgtagaaatgtacc 8275034  T

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Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 622 - 702
Target Start/End: Original strand, 31764297 - 31764377
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagctttg 702  Q
    |||||||| ||||| ||||||||||| |||||||||||| |||||| || ||||| |||||||||||||||||||||||||    
T  31764297 attgttagaattttgcagatttatcccgattttaaaatccggaatggtctttttctagaactttttcaattttaagctttg 31764377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 622 - 702
Target Start/End: Original strand, 21972067 - 21972147
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagctttg 702  Q
    ||||||| | ||||||||||||||||||||| |||| |||| |||| || ||||||||| |||||||||||| || |||||    
T  21972067 attgttaatgtttttcagatttatccggattataaattctgaaatggtctttttccagagctttttcaatttcaatctttg 21972147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 622 - 702
Target Start/End: Original strand, 21994498 - 21994578
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagctttg 702  Q
    ||||||| | ||||||||||||||||||||| |||| |||| |||| || ||||||||| |||||||||||| || |||||    
T  21994498 attgttaatgtttttcagatttatccggattataaattctgaaatggtctttttccagagctttttcaatttcaatctttg 21994578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 622 - 702
Target Start/End: Original strand, 22154783 - 22154863
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagctttg 702  Q
    ||||||| | ||||||||||||||||||||| |||| ||||||||| |  ||||||||| ||||| |||||| || |||||    
T  22154783 attgttaatgtttttcagatttatccggattataaattctggaatggtttttttccagagcttttccaatttcaaactttg 22154863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 622 - 701
Target Start/End: Original strand, 46469459 - 46469538
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||| ||||| ||||| | |||||||||||||||  ||||| ||  ||| ||||||||||| ||||||||||||||    
T  46469459 attgttagaattttgcagatgtttccggattttaaaattcggaataatgttttaccagaacttttgcaattttaagcttt 46469538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 701
Target Start/End: Complemental strand, 39587577 - 39587496
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||||| ||||| ||||| | ||||||||| ||||||| |||| ||  ||| ||||||||||| ||||||||| ||||    
T  39587577 gcattgttagaattttgcagatgtttccggatttgaaaatctagaataatgttttaccagaacttttacaattttaaacttt 39587496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 611 - 692
Target Start/End: Original strand, 41192865 - 41192946
Alignment:
Q  611 ttccgaacagcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaatt 692  Q
    |||||||  |||||||||| ||||| ||||| | |||| |||||||||| |||||| ||  ||||||||||||||| |||||    
T  41192865 ttccgaattgcattgttagaattttgcagatgtctccgaattttaaaatttggaataatgtttttccagaacttttacaatt 41192946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 620 - 696
Target Start/End: Complemental strand, 16479233 - 16479157
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaa 696  Q
    |||||||||| ||||| || || | ||||||||| |||||||||||| ||  ||| ||||||||||| |||||||||    
T  16479233 gcattgttagaattttgcaaatgtttccggatttgaaaatctggaataatgttttaccagaacttttgcaattttaa 16479157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 620 - 696
Target Start/End: Original strand, 49324814 - 49324890
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaa 696  Q
    |||||||||| ||||| ||||| | ||||||||| |||||| ||||| ||  ||| ||||||||||| |||||||||    
T  49324814 gcattgttagaattttgcagatgtttccggatttgaaaatccggaataatgttttaccagaacttttgcaattttaa 49324890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 701
Target Start/End: Original strand, 49165205 - 49165284
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||| ||||| ||||| | |||||||||||||||| |||||  |  ||  ||||||||||| ||||||||||||||    
T  49165205 attgttagaattttgcagatgtttccggattttaaaatccggaatagtgtttaaccagaacttttgcaattttaagcttt 49165284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 620 - 701
Target Start/End: Complemental strand, 628421 - 628340
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||||| ||||| ||||| |||||| ||||||||||||||||| ||  ||||||||||||||| ||||||||||||||    
T  628421 gcattgttagaattttgcagatgtatccgaattttaaaatctggaataatgtttttccagaacttttacaattttaagcttt 628340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 620 - 701
Target Start/End: Original strand, 585502 - 585583
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||||| ||||| ||||| |||||| |||||||||||||||||  |  ||||||||||||||| ||||||||||||||    
T  585502 gcattgttagaattttgcagatgtatccgaattttaaaatctggaatagtgtttttccagaacttttacaattttaagcttt 585583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 696
Target Start/End: Complemental strand, 225708 - 225632
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaa 696  Q
    |||||||||| ||||| ||||||||| ||||||| |||||  |||||| |  ||||||||||||||| |||||||||    
T  225708 gcattgttagaattttgcagatttattcggatttcaaaattcggaatggtttttttccagaacttttacaattttaa 225632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 696
Target Start/End: Complemental strand, 702121 - 702045
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaa 696  Q
    |||||||||| ||||| ||||||||| ||||||| |||||  |||||| |  ||||||||||||||| |||||||||    
T  702121 gcattgttagaattttgcagatttattcggatttcaaaattcggaatggtttttttccagaacttttacaattttaa 702045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 696
Target Start/End: Complemental strand, 739331 - 739255
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaa 696  Q
    |||||||||| ||||| ||||||||| ||||||| |||||  |||||| |  ||||||||||||||| |||||||||    
T  739331 gcattgttagaattttgcagatttattcggatttcaaaattcggaatggtttttttccagaacttttacaattttaa 739255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 696
Target Start/End: Complemental strand, 863226 - 863150
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaa 696  Q
    |||||||||| ||||| ||||||||| ||||||| |||||  |||||| |  ||||||||||||||| |||||||||    
T  863226 gcattgttagaattttgcagatttattcggatttcaaaattcggaatggtttttttccagaacttttacaattttaa 863150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 622 - 701
Target Start/End: Original strand, 13545352 - 13545431
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||| ||||| ||||| | |||| |||| |||||||||||| ||  ||| ||||||||||| ||||||||||||||    
T  13545352 attgttagaattttgcagatgtttccgtatttgaaaatctggaataatgttttaccagaacttttgcaattttaagcttt 13545431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 622 - 701
Target Start/End: Complemental strand, 13679121 - 13679042
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||| ||||| ||||| | |||| |||| |||||||||||| ||  ||| ||||||||||| ||||||||||||||    
T  13679121 attgttagaattttgcagatgtttccgtatttgaaaatctggaataatgttttaccagaacttttgcaattttaagcttt 13679042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 701
Target Start/End: Complemental strand, 28249779 - 28249701
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||| ||||| ||||| |||| ||||||||||||| |||||  |  ||||||||||| ||| ||||||||||||||    
T  28249779 attgttagaattttgcagatgtatctggattttaaaatccggaatagtgtttttccagaac-tttacaattttaagcttt 28249701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 701
Target Start/End: Original strand, 43097643 - 43097718
Alignment:
Q  626 ttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||| ||||| ||||| | ||||||||||||||||  |||| ||  ||| ||||||||||| ||||||||||||||    
T  43097643 ttagaattttgcagatgtttccggattttaaaatccagaataatgttttaccagaacttttgcaattttaagcttt 43097718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 701
Target Start/End: Original strand, 31700127 - 31700208
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||||| ||||| ||||| | |||  |||| |||||| ||||| ||  ||| ||||||||||| ||||||||||||||    
T  31700127 gcattgttagaattttgcagatgtttccatatttgaaaatccggaataatgttttaccagaacttttgcaattttaagcttt 31700208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 620 - 701
Target Start/End: Original strand, 14263 - 14344
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||||| ||||| ||||| |||||| |||||||||||||||||  |  ||||||||||||||| ||||||||||||||    
T  14263 gcattgttagaattttgcagatgtatccgaattttaaaatctggaatagtgtttttccagaacttttacaattttaagcttt 14344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 584 - 701
Target Start/End: Complemental strand, 6900830 - 6900715
Alignment:
Q  584 cgaaaatatccttgtccgggttattggttccgaacagcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaact 683  Q
    |||||||| |||||| ||| ||||| ||||| |||| ||||||||||||||| |||||||||||| |||||| ||||   |||| || |||||||||| |    
T  6900830 cgaaaatacccttgttcggattatttgttccaaacaacattgttagtattttccagatttatccgcattttataatccaaaatgttctttttccagaa-t 6900732  T
Q  684 ttttcaattttaagcttt 701  Q
    ||||| ||||||||||||    
T  6900731 ttttc-attttaagcttt 6900715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 622 - 701
Target Start/End: Original strand, 24686303 - 24686382
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    ||||||| | |||| | ||||||||||||||||||| ||||||||| || ||||||| ||||||| ||||||||||||||    
T  24686303 attgttaatgttttccggatttatccggattttaaattctggaatggtctttttccataacttttacaattttaagcttt 24686382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 620 - 696
Target Start/End: Complemental strand, 114327 - 114251
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaa 696  Q
    |||||||||| ||||| ||||| | ||||||||| |||||||||||| ||  ||| ||||||||||| | |||||||    
T  114327 gcattgttagaattttgcagatgtttccggatttgaaaatctggaataatgttttaccagaacttttgcgattttaa 114251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 622 - 696
Target Start/End: Original strand, 38247237 - 38247311
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaa 696  Q
    |||||||| ||||| ||||| | ||||||||| |||||||||||| ||  ||| |||||| |||| |||||||||    
T  38247237 attgttagaattttgcagatgtttccggatttgaaaatctggaataatattttaccagaagttttgcaattttaa 38247311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 622 - 702
Target Start/End: Original strand, 46384 - 46464
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagctttg 702  Q
    |||||||| ||||| |||||| |||||||| ||||||| ||||| |  | |||||||||||||||||||||||||||||||    
T  46384 attgttagaattttgcagattaatccggatattaaaatttggaaagggctttttccagaactttttcaattttaagctttg 46464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 611 - 701
Target Start/End: Complemental strand, 4049184 - 4049093
Alignment:
Q  611 ttccgaacagcattgttagtatttttcagatttatccggattttaaaatctggaat-gatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||  |||||||||| ||||| ||||| |||||||||||||||||||||||| | |  ||||||| ||||||| ||||||||||||||    
T  4049184 ttccgaattgcattgttagaattttgcagatgtatccggattttaaaatctggaatggttttttttccataacttttacaattttaagcttt 4049093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 622 - 701
Target Start/End: Original strand, 38550368 - 38550447
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||| ||||| ||||| |||||||||||||||||| | |||  |  ||||||||||||||| ||||||||||||||    
T  38550368 attgttagaattttgcagatgtatccggattttaaaatccgaaatagtgtttttccagaacttttacaattttaagcttt 38550447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 621 - 701
Target Start/End: Complemental strand, 5419865 - 5419785
Alignment:
Q  621 cattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    ||||||||| ||||| ||||| | ||||||||| |||||| ||||| ||  ||| ||||||||||| ||||||||||||||    
T  5419865 cattgttagaattttgcagatgtttccggatttgaaaatccggaataatgttttaccagaacttttgcaattttaagcttt 5419785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 621 - 701
Target Start/End: Original strand, 18559500 - 18559580
Alignment:
Q  621 cattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    ||||||||| ||||| ||||| | |||||||||||||||| | ||| ||  ||| ||||||||||| ||||||||||||||    
T  18559500 cattgttagaattttacagatgtttccggattttaaaatccgaaataatattttaccagaacttttgcaattttaagcttt 18559580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 620 - 696
Target Start/End: Complemental strand, 44109607 - 44109531
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaa 696  Q
    |||||||||| ||||| ||||| | |||||||||||||||||||||| ||  ||| |||||| |||| |||||||||    
T  44109607 gcattgttagaattttgcagatgtttccggattttaaaatctggaataatgttttaccagaagttttacaattttaa 44109531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 622 - 701
Target Start/End: Complemental strand, 16452978 - 16452899
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||| ||||| ||||| ||||||||||||||||||  ||||  |  ||||||||||||||| ||||||||| ||||    
T  16452978 attgttagaattttgcagatgtatccggattttaaaatccagaatagtgtttttccagaacttttacaattttaaacttt 16452899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 611 - 696
Target Start/End: Complemental strand, 35159767 - 35159682
Alignment:
Q  611 ttccgaacagcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaa 696  Q
    |||||||  |||||||||| ||||| ||||| | ||||||||| |||||| ||||| ||  ||| ||||||||||| |||||||||    
T  35159767 ttccgaattgcattgttagaattttgcagatgtttccggatttgaaaatccggaataatgttttaccagaacttttgcaattttaa 35159682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 620 - 696
Target Start/End: Complemental strand, 1603822 - 1603746
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaa 696  Q
    |||||||||| ||||| ||||| | ||| ||||| |||||||||||| ||  ||| ||||||||||| |||||||||    
T  1603822 gcattgttagaattttgcagatgtttccagatttgaaaatctggaataatgttttaccagaacttttgcaattttaa 1603746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 621 - 701
Target Start/End: Complemental strand, 49375340 - 49375260
Alignment:
Q  621 cattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    ||||||||| ||||| ||||| | || |||||| |||||| ||||| ||  ||| ||||||||||| ||||||||||||||    
T  49375340 cattgttagaattttgcagatgtttctggatttgaaaatccggaataatgttttaccagaacttttgcaattttaagcttt 49375260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 620 - 696
Target Start/End: Complemental strand, 51890198 - 51890122
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaa 696  Q
    |||||||||| ||||| ||||| | ||||||||| |||||| ||||| ||  ||| ||||||||||| |||||||||    
T  51890198 gcattgttagaattttgcagatgtttccggatttgaaaatccggaataatgttttaccagaacttttgcaattttaa 51890122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 620 - 696
Target Start/End: Original strand, 55609635 - 55609711
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaa 696  Q
    |||||||||| ||||| || || | ||||||||| |||||||||||| ||  ||| ||||||||||| |||||||||    
T  55609635 gcattgttagaattttgcaaatgtttccggatttgaaaatctggaataatgttttaccagaacttttgcaattttaa 55609711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 622 - 702
Target Start/End: Complemental strand, 27217850 - 27217770
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagctttg 702  Q
    |||||||| ||||| |||||| |||||||| |||||||  |||| | || ||||||| |||||||||||||||||||||||    
T  27217850 attgttagaattttgcagattaatccggatattaaaattcggaaaggtctttttccataactttttcaattttaagctttg 27217770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 620 - 701
Target Start/End: Complemental strand, 49852755 - 49852673
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaat-gatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||||| ||||| ||||| |||||||||||||||||| ||||| | |  ||||||| ||||||| ||||||||||||||    
T  49852755 gcattgttagaattttgcagatgtatccggattttaaaatccggaatggttttttttccataacttttacaattttaagcttt 49852673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 622 - 701
Target Start/End: Complemental strand, 41087453 - 41087374
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||| ||||| ||||| | ||||||||| |||||||||||| ||  ||| | ||||||||| ||||||||||||||    
T  41087453 attgttagaattttgcagatgtttccggatttgaaaatctggaataatgttttactagaacttttgcaattttaagcttt 41087374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 622 - 701
Target Start/End: Complemental strand, 41092221 - 41092142
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||| ||||| ||||| | ||||||||| |||||||||||| ||  ||| | ||||||||| ||||||||||||||    
T  41092221 attgttagaattttgcagatgtttccggatttgaaaatctggaataatgttttactagaacttttgcaattttaagcttt 41092142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 1250879 - 1250842
Alignment:
Q  92 caagtgaaaacagaagaacaaaatgtgtagaaatgtac 129  Q
    |||||||||||| |||||||||||||||||||||||||    
T  1250879 caagtgaaaacataagaacaaaatgtgtagaaatgtac 1250842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 621 - 697
Target Start/End: Original strand, 41899448 - 41899524
Alignment:
Q  621 cattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaag 697  Q
    ||||||||| ||||||| ||| | ||||||||| |||||| ||||| ||  ||| ||||||||||| ||||||||||    
T  41899448 cattgttagaatttttccgatgtttccggatttgaaaatccggaataatgttttaccagaacttttgcaattttaag 41899524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 621 - 697
Target Start/End: Complemental strand, 50891582 - 50891506
Alignment:
Q  621 cattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaag 697  Q
    |||||||| |||||||||||   || |||||||||||||| ||||||||| ||||| |||| |||||  ||||||||    
T  50891582 cattgttaatatttttcagacgaattcggattttaaaatccggaatgatctttttctagaatttttttcattttaag 50891506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 678
Target Start/End: Original strand, 6603215 - 6603282
Alignment:
Q  611 ttccgaacagcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttcca 678  Q
    |||||||| ||||||||| | |||||||||||| |  ||||||||||||| |||| |||| |||||||    
T  6603215 ttccgaactgcattgttaatgtttttcagatttgtttggattttaaaatccggaacgatcattttcca 6603282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 701
Target Start/End: Complemental strand, 12529412 - 12529333
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||| ||||| ||||| | |  ||||||||||||| ||||| ||  ||| ||||||||||| ||||||||||||||    
T  12529412 attgttagaattttacagatgtttttggattttaaaatccggaataatattttaccagaacttttgcaattttaagcttt 12529333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 611 - 697
Target Start/End: Original strand, 25976226 - 25976312
Alignment:
Q  611 ttccgaacagcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaag 697  Q
    ||||| || |||||||||| ||||| ||||| |||| ||||||||||||| |||||  |  ||||||||||||||| ||||||||||    
T  25976226 ttccggactgcattgttagaattttgcagatgtatctggattttaaaatccggaatagtgtttttccagaacttttacaattttaag 25976312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 620 - 701
Target Start/End: Complemental strand, 26280097 - 26280016
Alignment:
Q  620 gcattgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||||| |||||  |||| |||| |||||| |||||| |||||| |  ||||||||||||||| ||||||||||||||    
T  26280097 gcattgttagaattttgtagatgtatctggatttgaaaatccggaatggtttttttccagaacttttacaattttaagcttt 26280016  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 622 - 701
Target Start/End: Complemental strand, 27115340 - 27115261
Alignment:
Q  622 attgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    |||||||  ||||| ||||| |||||||||||||||||| |||||  |  |||| |||||||||| ||||||||||||||    
T  27115340 attgttataattttacagatgtatccggattttaaaatccggaatagtgtttttgcagaacttttacaattttaagcttt 27115261  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 623 - 701
Target Start/End: Original strand, 2605692 - 2605770
Alignment:
Q  623 ttgttagtatttttcagatttatccggattttaaaatctggaatgatccttttccagaactttttcaattttaagcttt 701  Q
    ||||||| ||||| | ||| | ||||||||| |||||| ||||| ||  ||| ||||||||||| ||||||||||||||    
T  2605692 ttgttagaattttgcggatgtttccggatttgaaaatccggaataatgttttaccagaacttttgcaattttaagcttt 2605770  T

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