View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5408-Insertion-2 (Length: 735)

Name: NF5408-Insertion-2
Description: NF5408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5408-Insertion-2
NF5408-Insertion-2
[»] chr2 (11 HSPs)
chr2 (6-473)||(3112857-3113307)
chr2 (508-735)||(3112593-3112822)
chr2 (230-330)||(35755585-35755685)
chr2 (225-348)||(11393432-11393554)
chr2 (225-348)||(11410093-11410215)
chr2 (225-268)||(14316964-14317007)
chr2 (239-330)||(35459806-35459897)
chr2 (239-326)||(38239638-38239725)
chr2 (282-319)||(32837250-32837287)
chr2 (274-323)||(37474687-37474736)
chr2 (225-262)||(42974234-42974271)
[»] chr8 (12 HSPs)
chr8 (43-149)||(22700306-22700412)
chr8 (217-335)||(14482076-14482194)
chr8 (237-334)||(39392740-39392837)
chr8 (230-328)||(7008516-7008612)
chr8 (236-343)||(10727090-10727195)
chr8 (225-330)||(8536132-8536236)
chr8 (225-322)||(35453714-35453811)
chr8 (225-325)||(8194026-8194126)
chr8 (225-328)||(2364558-2364661)
chr8 (241-347)||(2698691-2698795)
chr8 (236-326)||(35869730-35869820)
chr8 (225-262)||(6950218-6950255)
[»] chr6 (15 HSPs)
chr6 (225-326)||(32975860-32975961)
chr6 (234-330)||(8349747-8349843)
chr6 (214-326)||(21919945-21920057)
chr6 (245-326)||(2514604-2514685)
chr6 (281-329)||(33787829-33787877)
chr6 (225-268)||(4006611-4006654)
chr6 (275-330)||(27893979-27894034)
chr6 (255-329)||(4248870-4248944)
chr6 (288-326)||(24774703-24774741)
chr6 (282-347)||(29274297-29274360)
chr6 (288-330)||(31583646-31583688)
chr6 (215-320)||(7354076-7354181)
chr6 (230-263)||(9041567-9041600)
chr6 (281-330)||(24836282-24836331)
chr6 (282-335)||(35095005-35095058)
[»] chr5 (15 HSPs)
chr5 (225-325)||(20982223-20982323)
chr5 (225-320)||(26516180-26516275)
chr5 (231-322)||(6733983-6734074)
chr5 (225-330)||(32172535-32172640)
chr5 (230-326)||(35135749-35135845)
chr5 (251-326)||(37063161-37063236)
chr5 (230-296)||(6773414-6773480)
chr5 (260-344)||(912719-912802)
chr5 (288-347)||(2568602-2568660)
chr5 (225-263)||(13782016-13782054)
chr5 (293-330)||(10303751-10303788)
chr5 (230-330)||(11457010-11457108)
chr5 (293-330)||(35095866-35095903)
chr5 (281-326)||(35960352-35960397)
chr5 (225-262)||(39257537-39257574)
[»] chr4 (11 HSPs)
chr4 (29-119)||(35892923-35893013)
chr4 (238-330)||(485976-486069)
chr4 (274-350)||(51044525-51044598)
chr4 (282-347)||(6364088-6364151)
chr4 (296-330)||(20105916-20105950)
chr4 (282-328)||(23503498-23503544)
chr4 (236-326)||(24443931-24444021)
chr4 (282-347)||(30024639-30024702)
chr4 (294-328)||(49219090-49219124)
chr4 (282-347)||(18630619-18630682)
chr4 (236-328)||(55437371-55437461)
[»] chr7 (15 HSPs)
chr7 (275-330)||(30496636-30496691)
chr7 (216-326)||(31341067-31341177)
chr7 (239-328)||(49060436-49060525)
chr7 (225-328)||(22387986-22388092)
chr7 (236-326)||(47003980-47004070)
chr7 (225-330)||(2223031-2223135)
chr7 (225-330)||(12835020-12835125)
chr7 (236-304)||(27389276-27389344)
chr7 (280-330)||(1417201-1417251)
chr7 (225-307)||(27481400-27481482)
chr7 (225-330)||(30133933-30134036)
chr7 (282-327)||(15328545-15328590)
chr7 (244-321)||(24975805-24975882)
chr7 (225-266)||(28702639-28702680)
chr7 (230-271)||(34922843-34922884)
[»] chr3 (10 HSPs)
chr3 (230-268)||(24625387-24625425)
chr3 (236-326)||(3757941-3758031)
chr3 (282-326)||(20669118-20669162)
chr3 (288-328)||(34318033-34318073)
chr3 (275-330)||(2128334-2128389)
chr3 (225-268)||(5430923-5430966)
chr3 (288-353)||(49586978-49587041)
chr3 (283-328)||(1395611-1395656)
chr3 (229-262)||(22723948-22723981)
chr3 (251-347)||(41028919-41029013)
[»] scaffold0024 (1 HSPs)
scaffold0024 (225-330)||(27458-27563)
[»] chr1 (8 HSPs)
chr1 (230-347)||(29793991-29794105)
chr1 (282-326)||(30259574-30259618)
chr1 (283-330)||(12519053-12519100)
chr1 (285-353)||(26293170-26293234)
chr1 (230-347)||(43372027-43372142)
chr1 (293-330)||(15687156-15687193)
chr1 (237-326)||(23895230-23895319)
chr1 (281-330)||(36151588-36151637)


Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 6 - 473
Target Start/End: Complemental strand, 3113307 - 3112857
Alignment:
Q  6 catctgttaccactccaccagcttcttgtatgataataacacctgcagcatgatcccatattttctccttgtaacctgcccttgcaaatttcatgaatac 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3113307 catctgttaccactccaccagcttcttgtatgataataacacctgcagcatgatcccatattttctccttgtaacctgcccttgcaaatttcatgaatac 3113208  T
Q  106 ctctgcatctccacgacctattgctgcatattttaccatgctgtatactcttaatggttgtttcctgcacaaaccagaaaaaacaactatattataaacc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3113207 ctctgcatctccacgacctattgctgcatattttaccatgctgtatactcttaatggttgtttcctgcacacaccagaaaaaacaactatattataaacc 3113108  T
Q  206 tataatatacttaggctccgtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataac 305  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  3113107 tataatatacttgggctccgtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttc------ 3113014  T
Q  306 aagatataaaataaagtcaaattgtgttttcacataagctatcctggacatatcatggcttatttccataagctatatcccaaacacactcataaatgct 405  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3113013 -----------taaagtcaaattgtgttttcacataagctatcctggacatatcatggcttatttccataagctatatcccaaacactctcataaatgct 3112925  T
Q  406 tattctatttctagtaaataaacacaaataagttattcatatatatcctaagtggcacatttatgctg 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3112924 tattctatttctagtaaataaacacaaataagttattcatatatatcctcagtggcacatttatgctg 3112857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 508 - 735
Target Start/End: Complemental strand, 3112822 - 3112593
Alignment:
Q  508 acagatgttaataggaatctaactagttaaaccatacatttaggtgtggaatattttctgtcaatnnnnnnn--ggtgtggaatattaaactacacatta 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||    
T  3112822 acagatgttaataggaatctaactagttaaaccatacatttaggtgtggaatattttctgtcaaaaaaaaaaaaggtgtggaatattaaactacacatta 3112723  T
Q  606 cagtttctgctttcagttttatttaacaacctctttatctcaagagtgccaatttaacaggattattcgaccttattcatgaattttaaattttagaatc 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3112722 cagtttctgctttcagttttatttaacaacctctttatctcaagagtgccaatttaacaggattattcgaccttattcatgaattttaaattttagaatc 3112623  T
Q  706 tatctggtagcaatttatcagggatattta 735  Q
    ||||||||||||||||||||||||||||||    
T  3112622 tatctggtagcaatttatcagggatattta 3112593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 35755685 - 35755585
Alignment:
Q  230 gataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaattg 329  Q
    ||||| |||||||||| ||| ||| | ||||||   |||||||| |||| ||||||| |||| ||||||||||||  | ||| |||||||||||||||||    
T  35755685 gataaacaacttaattgagcccttgttgcataaacacttgtcgtataagtgtttatgtataagctatttctataatcaaatagaaaataaagtcaaattg 35755586  T
Q  330 t 330  Q
    |    
T  35755585 t 35755585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 348
Target Start/End: Complemental strand, 11393554 - 11393432
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtca 324  Q
    |||| ||||| || ||||||||||| ||||||||| ||||| || || | |||| | ||||  |||| ||||||||||| ||| | ||| |||||| |||    
T  11393554 gtttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagctatttctatatcaaaagatataataaattca 11393455  T
Q  325 aattgtgttttcacataagctatc 348  Q
    ||||  ||||||| ||||||||||    
T  11393454 aatt-cgttttcatataagctatc 11393432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 348
Target Start/End: Complemental strand, 11410215 - 11410093
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtca 324  Q
    |||| ||||| || ||||||||||| ||||||||| ||||| || || | |||| | ||||  |||| ||||||||||| ||| | ||| |||||| |||    
T  11410215 gtttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagctatttctatatcaaaagatataataaattca 11410116  T
Q  325 aattgtgttttcacataagctatc 348  Q
    ||||  ||||||| ||||||||||    
T  11410115 aatt-cgttttcatataagctatc 11410093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 14317007 - 14316964
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgctt 268  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||    
T  14317007 gtttggataaacaaattaattaagcgcttatagcataagtgctt 14316964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 330
Target Start/End: Original strand, 35459806 - 35459897
Alignment:
Q  239 cttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaattgt 330  Q
    ||||||| ||| ||||||||||||||| || || | |||| | || || |||| |||||| |||| ||| | ||||||||||||||||||||    
T  35459806 cttaattcagctcttatagcataagtgtttatcatataagtgattttgtataagctatttgtataccaaaagataaaataaagtcaaattgt 35459897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 326
Target Start/End: Complemental strand, 38239725 - 38239638
Alignment:
Q  239 cttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaa 326  Q
    ||||||||||| ||| |||||||||  ||  || | |||| ||||||| |||| ||||||||||||||| | ||||||| ||||||||    
T  38239725 cttaattaagcacttgtagcataagcactcatcatgtaagtgtttatgtataagctatttctataacaaaagataaaatcaagtcaaa 38239638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 32837250 - 32837287
Alignment:
Q  282 ttatgcataatctatttctataacaagatataaaataa 319  Q
    |||||||||||||||||||||||||| | |||||||||    
T  32837250 ttatgcataatctatttctataacaaaagataaaataa 32837287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 37474687 - 37474736
Alignment:
Q  274 ttaagagtttatgcataatctatttctataacaagatataaaataaagtc 323  Q
    ||||| |||||||||||| ||||||| ||||||| | |||||||||||||    
T  37474687 ttaagtgtttatgcataaactatttcgataacaaaaaataaaataaagtc 37474736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 42974234 - 42974271
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataa 262  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  42974234 gtttggataagcaacttaattaagagcttatagcataa 42974271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 22700306 - 22700412
Alignment:
Q  43 aacacctgcagcatgatcccatattttctccttgtaacctgcccttgcaaatttcatgaatacctctgcatctccacgacctattgctgcatattttacc 142  Q
    |||||| ||||||||||||||||| ||||| |||||||||| | |||||||||||||||||| ||| |||||||| |   ||||||||||||| ||||||    
T  22700306 aacaccggcagcatgatcccatatcttctctttgtaacctgactttgcaaatttcatgaatatctcggcatctccccttgctattgctgcatactttacc 22700405  T
Q  143 atgctgt 149  Q
    || ||||    
T  22700406 atactgt 22700412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 217 - 335
Target Start/End: Original strand, 14482076 - 14482194
Alignment:
Q  217 taggctccgtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaa 316  Q
    ||||||| ||||  |||| ||| |||||||||  |||||||||| ||||||| || | |||| | ||||| |||| ||||||||||||||| | ||||||    
T  14482076 taggctctgtttgaataaacaatttaattaagttcttatagcattagtgcttatcatataagtgcttatgtataaactatttctataacaaaagataaaa 14482175  T
Q  317 taaagtcaaattgtgtttt 335  Q
    |||||||||||||| ||||    
T  14482176 taaagtcaaattgtttttt 14482194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 237 - 334
Target Start/End: Complemental strand, 39392837 - 39392740
Alignment:
Q  237 aacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaattgtgttt 334  Q
    |||||||||||||  ||||||||||||||||| || | |||| |  |||| |||| ||||||||||||||| | |||||||||||||||| |||||||    
T  39392837 aacttaattaagcatttatagcataagtgcttatcatataagtggctatgtataaactatttctataacaaaagataaaataaagtcaaactgtgttt 39392740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 230 - 328
Target Start/End: Original strand, 7008516 - 7008612
Alignment:
Q  230 gataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaatt 328  Q
    ||||| |||||||||||||||||||||||||||| | || ||   ||| || || || ||||||||||||||||||||   ||||||||||||||||||    
T  7008516 gataaacaacttaattaagcgcttatagcataagcgtttatc--ataaaagattttgtataatctatttctataacaatggataaaataaagtcaaatt 7008612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 236 - 343
Target Start/End: Original strand, 10727090 - 10727195
Alignment:
Q  236 caacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaattgtgtttt 335  Q
    ||||||||||||||  |||||||||||||| |  || | |||| | |||||||||| ||||||||||| ||| | || ||||||| |||||  |||||||    
T  10727090 caacttaattaagcatttatagcataagtgttcatcatataagtgcttatgcataagctatttctatagcaaaagatgaaataaattcaaa--gtgtttt 10727187  T
Q  336 cacataag 343  Q
    ||||||||    
T  10727188 cacataag 10727195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 330
Target Start/End: Complemental strand, 8536236 - 8536132
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtca 324  Q
    |||| ||||| |||||||||| || ||||||| ||| | |||||||| | |||| | ||||| |||| ||||||||||||||| ||| ||| | ||||||    
T  8536236 gtttggataaacaacttaattgagtgcttataccatgaatgcttgtcatataagtgcttatgtataagctatttctataacaaaata-aaagtgaagtca 8536138  T
Q  325 aattgt 330  Q
    ||||||    
T  8536137 aattgt 8536132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 322
Target Start/End: Complemental strand, 35453811 - 35453714
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagt 322  Q
    ||||| |||| ||||||||||||| | |||||||||||| ||||||| | ||||   ||||  ||||||| |||||| ||||| | ||||||||||||    
T  35453811 gtttatataaacaacttaattaagtgattatagcataagcgcttgtcatataagtacttatatataatctgtttctacaacaaaagataaaataaagt 35453714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 325
Target Start/End: Complemental strand, 8194126 - 8194026
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtca 324  Q
    |||||||||| |||||||||||||| |||||||||||||   |  || |||||| | ||||| |||| ||||||||||||  | |  |||||||||||||    
T  8194126 gtttagataaacaacttaattaagcccttatagcataagcattcatcatttaagtgcttatggataagctatttctataagtaaagttaaaataaagtca 8194027  T
Q  325 a 325  Q
    |    
T  8194026 a 8194026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 328
Target Start/End: Complemental strand, 2364661 - 2364558
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtca 324  Q
    |||| ||||| |||| || |||||||||||||||||||||| || || | |||   |||||| |||  |||||| |||| ||| | ||||||||||||||    
T  2364661 gtttggataaacaacatagttaagcgcttatagcataagtgtttatcatataactatttatgtatacgctatttttatagcaaaagataaaataaagtca 2364562  T
Q  325 aatt 328  Q
    ||||    
T  2364561 aatt 2364558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 2698691 - 2698795
Alignment:
Q  241 taattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaattgtgttttcacat 340  Q
    ||||||||| ||||||  |||||||||| | || |||| | |||||||||| ||||||||||| ||| |  |||||||||||| ||   |||||||| ||    
T  2698691 taattaagcacttataagataagtgcttattgtgtaagggcttatgcataagctatttctatagcaaaaagtaaaataaagtcgaa--ctgttttcatat 2698788  T
Q  341 aagctat 347  Q
    |||||||    
T  2698789 aagctat 2698795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 35869730 - 35869820
Alignment:
Q  236 caacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaa 326  Q
    |||||| |||||||||||||||||||||  ||| || | ||||   ||||| |||| | ||||||| ||||| |||||||||||| |||||    
T  35869730 caactttattaagcgcttatagcataagcacttatcatataagttcttatgtataagcgatttctacaacaaaatataaaataaattcaaa 35869820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 6950218 - 6950255
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataa 262  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  6950218 gtttagataaacaacttaattaagtgcttatagcataa 6950255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 225 - 326
Target Start/End: Original strand, 32975860 - 32975961
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtca 324  Q
    |||||||||| ||||||||||||||| |||||||||||| |||| || | |||| ||||||| ||||  ||||||| |||||| ||||||||||||||||    
T  32975860 gtttagataaacaacttaattaagcgtttatagcataagcgcttctcatataagtgtttatgtataagttatttctgtaacaaaatataaaataaagtca 32975959  T
Q  325 aa 326  Q
    ||    
T  32975960 aa 32975961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 234 - 330
Target Start/End: Complemental strand, 8349843 - 8349747
Alignment:
Q  234 agcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaattgt 330  Q
    |||||||||||||||||||||||||||||   ||| || | |||| |||| || |||| |||||||| |||||| | |||||||||||| |||||||    
T  8349843 agcaacttaattaagcgcttatagcataaccacttatcatataagtgtttgtgtataaactatttctctaacaaaagataaaataaagttaaattgt 8349747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 214 - 326
Target Start/End: Original strand, 21919945 - 21920057
Alignment:
Q  214 acttaggctccgtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatata 313  Q
    |||||||| | |||| |||||| |||||||||||||||||||||||||||| ||| || | |||| | |||||||||| |  ||| | |||||| ||| |    
T  21919945 acttaggccctgtttggataagaaacttaattaagcgcttatagcataagtacttatcatataagtgcttatgcataaacattttttgtaacaaaataga 21920044  T
Q  314 aaataaagtcaaa 326  Q
    ||||||| |||||    
T  21920045 aaataaattcaaa 21920057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 2514604 - 2514685
Alignment:
Q  245 taagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaa 326  Q
    ||||| |||||||||||| ||||| || | |||| | ||||| |||| |||||||||||| || | ||||||||||||||||    
T  2514604 taagctcttatagcataaatgcttatcatgtaagtgcttatgtataagctatttctataataaaagataaaataaagtcaaa 2514685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 33787877 - 33787829
Alignment:
Q  281 tttatgcataatctatttctataacaagatataaaataaagtcaaattg 329  Q
    |||||| |||| ||||||||||||||| |||||||| ||||||||||||    
T  33787877 tttatgtataaactatttctataacaaaatataaaacaaagtcaaattg 33787829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 4006611 - 4006654
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgctt 268  Q
    |||| |||||||||||||||||| | ||||||||||||||||||    
T  4006611 gtttggataagcaacttaattaatcccttatagcataagtgctt 4006654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 27893979 - 27894034
Alignment:
Q  275 taagagtttatgcataatctatttctataacaagatataaaataaagtcaaattgt 330  Q
    |||| ||||||| |||| ||||||||| ||||  ||||||||||||||||||||||    
T  27893979 taagggtttatgtataagctatttctacaacagaatataaaataaagtcaaattgt 27894034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 255 - 329
Target Start/End: Original strand, 4248870 - 4248944
Alignment:
Q  255 tagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaattg 329  Q
    ||||||||| ||||||| | |||| | ||||  |||| ||||||| ||||||| | |||||||||||||||||||    
T  4248870 tagcataagcgcttgtcatataagtgcttatatataagctatttcaataacaaaagataaaataaagtcaaattg 4248944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 288 - 326
Target Start/End: Original strand, 24774703 - 24774741
Alignment:
Q  288 ataatctatttctataacaagatataaaataaagtcaaa 326  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  24774703 ataaactatttctataacaaaatataaaataaagtcaaa 24774741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 29274360 - 29274297
Alignment:
Q  282 ttatgcataatctatttctataacaagatataaaataaagtcaaattgtgttttcacataagctat 347  Q
    ||||| |||| ||||||||||| ||| | |||||||||||||||||  |||||||| |||||||||    
T  29274360 ttatgtataagctatttctatagcaaaagataaaataaagtcaaat--tgttttcatataagctat 29274297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 31583646 - 31583688
Alignment:
Q  288 ataatctatttctataacaagatataaaataaagtcaaattgt 330  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||    
T  31583646 ataagctatttctataacaagagataaaatgaagtcaaattgt 31583688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 7354076 - 7354181
Alignment:
Q  215 cttaggctccgtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataa 314  Q
    ||||||| | |||| ||||| || |||  ||||||||||||||||||| ||||| || |  |||  || ||| |||| ||||||||||||||| | ||||    
T  7354076 cttaggccctgtttggataaacagctttgttaagcgcttatagcataaatgcttttcatacaagttttcatgtataaactatttctataacaaaagataa 7354175  T
Q  315 aataaa 320  Q
    ||||||    
T  7354176 aataaa 7354181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 9041600 - 9041567
Alignment:
Q  230 gataagcaacttaattaagcgcttatagcataag 263  Q
    ||||| ||||||||||||||||||||||||||||    
T  9041600 gataaacaacttaattaagcgcttatagcataag 9041567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 24836331 - 24836282
Alignment:
Q  281 tttatgcataatctatttctataacaagatataaaataaagtcaaattgt 330  Q
    |||||| ||||  |||||||||||||| | ||||||||||||||||||||    
T  24836331 tttatgtataagttatttctataacaaaagataaaataaagtcaaattgt 24836282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 282 - 335
Target Start/End: Complemental strand, 35095058 - 35095005
Alignment:
Q  282 ttatgcataatctatttctataacaagatataaaataaagtcaaattgtgtttt 335  Q
    ||||| |||| | ||||||||||||| ||||||||||| |||||||||| ||||    
T  35095058 ttatgtataaaccatttctataacaaaatataaaataatgtcaaattgtttttt 35095005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 225 - 325
Target Start/End: Complemental strand, 20982323 - 20982223
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtca 324  Q
    |||| ||||| |||||| |||||| ||||||||||||||||||| || | |||| | ||||| |||| |||||||||||||||   ||||||||||||||    
T  20982323 gtttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaagtca 20982224  T
Q  325 a 325  Q
    |    
T  20982223 a 20982223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 225 - 320
Target Start/End: Original strand, 26516180 - 26516275
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaa 320  Q
    |||| ||||| |||||||||||||||||||||||||||| |||| || | |||| | ||||| |||| ||||||||| ||||| | ||||||||||    
T  26516180 gtttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaataaa 26516275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 231 - 322
Target Start/End: Complemental strand, 6734074 - 6733983
Alignment:
Q  231 ataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagt 322  Q
    |||| |||||||||||||||||| ||  ||||||| || || | |||| ||||||||||||||||||| |||||| | | ||||||||||||    
T  6734074 ataaacaacttaattaagcgcttctaatataagtgattatcatataagtgtttatgcataatctatttttataacgaaagataaaataaagt 6733983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 225 - 330
Target Start/End: Original strand, 32172535 - 32172640
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtca 324  Q
    |||| ||||| |||| |||||||||||||| |||||||| |||| || |  ||||| ||||| |||| ||||||||| ||||| | ||||||| ||||||    
T  32172535 gtttggataaacaacataattaagcgcttacagcataagcgcttatcatacaagagcttatgtataaactatttctacaacaaaagataaaatgaagtca 32172634  T
Q  325 aattgt 330  Q
    | ||||    
T  32172635 agttgt 32172640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 230 - 326
Target Start/End: Complemental strand, 35135845 - 35135749
Alignment:
Q  230 gataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaa 326  Q
    ||||| |||||||||| | | || |||||||||||||||  | | |||| ||||||| ||||  |||||||||||||| | ||||||||||||||||    
T  35135845 gataaacaacttaattcaacactcatagcataagtgcttaacatataagtgtttatgtataagatatttctataacaaaagataaaataaagtcaaa 35135749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 37063236 - 37063161
Alignment:
Q  251 cttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaa 326  Q
    |||||||||||| |||||||| | |||  | ||||| |||| ||||||||||||||| | ||||||||||||||||    
T  37063236 cttatagcataaatgcttgtcatataaatgcttatgtataaactatttctataacaaaagataaaataaagtcaaa 37063161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 6773480 - 6773414
Alignment:
Q  230 gataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctat 296  Q
    ||||| |||||||||||||||||| ||||||||| | |||||||  ||||||||||| |||| ||||    
T  6773480 gataaacaacttaattaagcgcttctagcataagagattgtcgtacaagagtttatgtataagctat 6773414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 344
Target Start/End: Complemental strand, 912802 - 912719
Alignment:
Q  260 taagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaattgtgttttcacataagc 344  Q
    ||||||||| || | |||| ||||||| ||||  |||||||||||||  |||||||||||||||||| | |||||||| ||||||    
T  912802 taagtgcttatcatataagcgtttatgaataagttatttctataacacaatataaaataaagtcaaaat-tgttttcatataagc 912719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 2568602 - 2568660
Alignment:
Q  288 ataatctatttctataacaagatataaaataaagtcaaattgtgttttcacataagctat 347  Q
    |||| |||||||||||||||||||||||| ||||| ||||||| |||||  |||||||||    
T  2568602 ataaactatttctataacaagatataaaacaaagttaaattgt-ttttcgtataagctat 2568660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 13782054 - 13782016
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataag 263  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  13782054 gtttagataaacaacttaattaagcgcttatggcataag 13782016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 10303751 - 10303788
Alignment:
Q  293 ctatttctataacaagatataaaataaagtcaaattgt 330  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  10303751 ctatttctataacaaaagataaaataaagtcaaattgt 10303788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 330
Target Start/End: Original strand, 11457010 - 11457108
Alignment:
Q  230 gataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaattg 329  Q
    ||||| || |||||| ||||||||||||||||||||||| || |  ||  ||||||| |||| |  |||||||||| | | ||| |||||||||||||||    
T  11457010 gataaacagcttaatcaagcgcttatagcataagtgcttatcatacaaatgtttatgtataagc--tttctataacgaaagatataataaagtcaaattg 11457107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 35095903 - 35095866
Alignment:
Q  293 ctatttctataacaagatataaaataaagtcaaattgt 330  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  35095903 ctatttctataacaaaagataaaataaagtcaaattgt 35095866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 35960352 - 35960397
Alignment:
Q  281 tttatgcataatctatttctataacaagatataaaataaagtcaaa 326  Q
    ||||||||||| |||||||||||| || | ||||||||||||||||    
T  35960352 tttatgcataaactatttctataataaaagataaaataaagtcaaa 35960397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 39257574 - 39257537
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataa 262  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  39257574 gtttggataaacaacttaattaagcgcttatagcataa 39257537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 35892923 - 35893013
Alignment:
Q  29 tcttgtatgataataacacctgcagcatgatcccatattttctccttgtaacctgcccttgcaaatttcatgaatacctctgcatctccac 119  Q
    ||||||||||| || | ||| ||||||||||||||||||||||| |||||||| | ||||||||| ||||| || ||||| ||||| ||||    
T  35892923 tcttgtatgatgatgaaaccagcagcatgatcccatattttctctttgtaaccagtccttgcaaacttcataaacacctcagcatccccac 35893013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 238 - 330
Target Start/End: Original strand, 485976 - 486069
Alignment:
Q  238 acttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaat-aaagtcaaattgt 330  Q
    |||||||||||||||||||||||||| |||| || |  ||| | ||||| |||  ||||||||| ||||| | ||||||| |||||||||||||    
T  485976 acttaattaagcgcttatagcataagcgcttatcataaaagtgcttatgtatatgctatttctaaaacaaaagataaaataaaagtcaaattgt 486069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 51044598 - 51044525
Alignment:
Q  274 ttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaattgtgttttcacataagctatcct 350  Q
    ||||| ||||||| |||| ||||||||||||||| | |||||||||||||||| | ||||||  |||||||||||||    
T  51044598 ttaagtgtttatgtataagctatttctataacaaaagataaaataaagtcaaact-tgtttt--cataagctatcct 51044525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 6364088 - 6364151
Alignment:
Q  282 ttatgcataatctatttctataacaagatataaaataaagtcaaattgtgttttcacataagctat 347  Q
    ||||| |||| ||||||||||||||| | |||||||||||| ||||| ||  ||||||||||||||    
T  6364088 ttatgtataagctatttctataacaaaagataaaataaagtgaaattctg--ttcacataagctat 6364151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 296 - 330
Target Start/End: Complemental strand, 20105950 - 20105916
Alignment:
Q  296 tttctataacaagatataaaataaagtcaaattgt 330  Q
    |||||||||||| ||||||||||||||||||||||    
T  20105950 tttctataacaaaatataaaataaagtcaaattgt 20105916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 282 - 328
Target Start/End: Original strand, 23503498 - 23503544
Alignment:
Q  282 ttatgcataatctatttctataacaagatataaaataaagtcaaatt 328  Q
    ||||| |||||||| ||||||||||| |||||||||||||| |||||    
T  23503498 ttatgtataatctaattctataacaaaatataaaataaagttaaatt 23503544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 24443931 - 24444021
Alignment:
Q  236 caacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaa 326  Q
    |||||| |||||||||||||||||||||  ||| || | ||||   ||||| |||| | ||||||| ||||| |||||||||||| |||||    
T  24443931 caactttattaagcgcttatagcataagcacttatcatataagttcttatgtataagcgatttctacaacaaaatataaaataaattcaaa 24444021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 30024639 - 30024702
Alignment:
Q  282 ttatgcataatctatttctataacaagatataaaataaagtcaaattgtgttttcacataagctat 347  Q
    ||||||||||  |||||||||||||| | |||||||||||| ||||  |||||||| |||||||||    
T  30024639 ttatgcataagttatttctataacaaaagataaaataaagtaaaat--tgttttcatataagctat 30024702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 294 - 328
Target Start/End: Original strand, 49219090 - 49219124
Alignment:
Q  294 tatttctataacaagatataaaataaagtcaaatt 328  Q
    |||||||||||||| ||||||||||||||||||||    
T  49219090 tatttctataacaaaatataaaataaagtcaaatt 49219124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 18630619 - 18630682
Alignment:
Q  282 ttatgcataatctatttctataacaagatataaaataaagtcaaattgtgttttcacataagctat 347  Q
    |||||||||| ||||||| ||||||| | ||||||||||||| ||||| ||||||| |||||||||    
T  18630619 ttatgcataaactatttcaataacaaaagataaaataaagtc-aattg-gttttcatataagctat 18630682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 328
Target Start/End: Complemental strand, 55437461 - 55437371
Alignment:
Q  236 caacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaatt 328  Q
    ||||||||||||  |||||||| |||| || || || | |||| | ||||  |||| |||||||||||||||  |||||||||||||||||||    
T  55437461 caacttaattaaatgcttatagtataattggttatcatataagcgattatctataagctatttctataacaa--tataaaataaagtcaaatt 55437371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 30496636 - 30496691
Alignment:
Q  275 taagagtttatgcataatctatttctataacaagatataaaataaagtcaaattgt 330  Q
    |||| ||||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  30496636 taagtgtttatgtataaactatttctataacaaaatataaaataaagtcaaattgt 30496691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 326
Target Start/End: Original strand, 31341067 - 31341177
Alignment:
Q  216 ttaggctccgtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaa 315  Q
    |||||| | |||| ||||| ||||||||| |||||||||| ||||||| |||| || | |||  | ||||| |||| |||||| |||||||| | |||||    
T  31341067 ttaggccctgtttggataaacaacttaatcaagcgcttattgcataagcgcttatcatctaaatgcttatgtataagctatttgtataacaaaagataaa 31341166  T
Q  316 ataaagtcaaa 326  Q
    |||||||||||    
T  31341167 ataaagtcaaa 31341177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 239 - 328
Target Start/End: Original strand, 49060436 - 49060525
Alignment:
Q  239 cttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaatt 328  Q
    ||||||||||| ||||||| ||||  |||| || | ||||  |||||| |||| ||||||||||||||| | ||||||||||||||||||    
T  49060436 cttaattaagcacttatagtataatggcttatcatataagtatttatgtataagctatttctataacaaaaaataaaataaagtcaaatt 49060525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 225 - 328
Target Start/End: Complemental strand, 22388092 - 22387986
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaa---ataaag 321  Q
    |||| ||||| ||||||||||||||||||||| |||||   ||| || |||||| | ||||| |||| ||||||||||||||| | |||||   ||||||    
T  22388092 gtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctataacaaaagataaaagtataaag 22387993  T
Q  322 tcaaatt 328  Q
    |||||||    
T  22387992 tcaaatt 22387986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 47003980 - 47004070
Alignment:
Q  236 caacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaa 326  Q
    ||||||||||||| |||||||||| || || || || | |||| ||||||   ||| ||||||||||||||| | ||||||||||||||||    
T  47003980 caacttaattaagtgcttatagcaaaaatgtttatcatataagtgtttatatgtaagctatttctataacaatagataaaataaagtcaaa 47004070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 330
Target Start/End: Original strand, 2223031 - 2223135
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtca 324  Q
    |||| ||||| ||| ||||||| ||  ||||||||||| | ||| |||| |||| ||||||| |||| ||||||||||||||| | |||||  |||||||    
T  2223031 gtttggataaacaatttaattaggcatttatagcataaat-cttatcgtataagtgtttatgtataagctatttctataacaaaagataaagaaaagtca 2223129  T
Q  325 aattgt 330  Q
    ||||||    
T  2223130 aattgt 2223135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 330
Target Start/End: Complemental strand, 12835125 - 12835020
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtca 324  Q
    |||| ||||| |||||| |||||||||||||| |||||  ||||  ||| | || | ||||||| |  ||||||||| ||||| | ||||||||||||||    
T  12835125 gtttggataaacaacttgattaagcgcttataacataaacgcttagcgtatgagtgcttatgcagatgctatttctacaacaaaagataaaataaagtca 12835026  T
Q  325 aattgt 330  Q
    ||||||    
T  12835025 aattgt 12835020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 27389276 - 27389344
Alignment:
Q  236 caacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataa 304  Q
    ||||||| |||||||| | |||||||||||||| || | |||| ||||||| |||| ||||||||||||    
T  27389276 caacttagttaagcgcatgtagcataagtgcttatcatataagtgtttatgtataagctatttctataa 27389344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 1417201 - 1417251
Alignment:
Q  280 gtttatgcataatctatttctataacaagatataaaataaagtcaaattgt 330  Q
    ||||||| |||| |||||| |||||||| | ||||||||||||||||||||    
T  1417201 gtttatgtataaactatttatataacaaaagataaaataaagtcaaattgt 1417251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 225 - 307
Target Start/End: Complemental strand, 27481482 - 27481400
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaa 307  Q
    |||| ||||| ||||||||||| | ||||||||||||| || || |  | |||| ||||||| |||| |||||||||||||||    
T  27481482 gtttggataaacaacttaattaggtgcttatagcataaatgtttattatataagtgtttatgtataagctatttctataacaa 27481400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 225 - 330
Target Start/End: Original strand, 30133933 - 30134036
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtca 324  Q
    |||| ||||| ||||| ||||||  |||||||||||||| |||| || |  ||| ||||||| |||| |||||| || ||||| | ||||||||||||||    
T  30133933 gtttggataaacaactcaattaaatgcttatagcataagcgcttatcat--aagtgtttatgtataagctatttttacaacaaaagataaaataaagtca 30134030  T
Q  325 aattgt 330  Q
    | ||||    
T  30134031 acttgt 30134036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 282 - 327
Target Start/End: Original strand, 15328545 - 15328590
Alignment:
Q  282 ttatgcataatctatttctataacaagatataaaataaagtcaaat 327  Q
    ||||||||||||||||||||||| || | |||||||||||| ||||    
T  15328545 ttatgcataatctatttctataataaaagataaaataaagttaaat 15328590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 321
Target Start/End: Original strand, 24975805 - 24975882
Alignment:
Q  244 ttaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaag 321  Q
    |||||||||| ||||||| |||||| || | |||| | | ||| |||||||| ||||||||||| | |||||||||||    
T  24975805 ttaagcgcttgtagcatatgtgcttatcatataagtgctgatgtataatctacttctataacaaaagataaaataaag 24975882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 28702639 - 28702680
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgc 266  Q
    |||| ||||| |||||||||||||| ||||||||||||||||    
T  28702639 gtttggataaacaacttaattaagcacttatagcataagtgc 28702680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 34922843 - 34922884
Alignment:
Q  230 gataagcaacttaattaagcgcttatagcataagtgcttgtc 271  Q
    ||||| |||||||||||| | |||||||||||||||||||||    
T  34922843 gataaacaacttaattaacctcttatagcataagtgcttgtc 34922884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 24625425 - 24625387
Alignment:
Q  230 gataagcaacttaattaagcgcttatagcataagtgctt 268  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24625425 gataagcaacttaattaagcgcttatagcataagtgctt 24625387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 3757941 - 3758031
Alignment:
Q  236 caacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaa 326  Q
    |||| ||||||||| ||| ||||||||||| || | || |||| | ||||| |||| |||||| | |||||| ||||||||||||||||||    
T  3757941 caacataattaagcccttttagcataagtgtttattgtgtaagtgcttatgtataagctatttttgtaacaaaatataaaataaagtcaaa 3758031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 20669118 - 20669162
Alignment:
Q  282 ttatgcataatctatttctataacaagatataaaataaagtcaaa 326  Q
    ||||| |||| ||||||||||||||||||||| ||||||||||||    
T  20669118 ttatgtataagctatttctataacaagatatacaataaagtcaaa 20669162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 34318033 - 34318073
Alignment:
Q  288 ataatctatttctataacaagatataaaataaagtcaaatt 328  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  34318033 ataagctatttctataacaaaatataaaataaagtcaaatt 34318073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 330
Target Start/End: Complemental strand, 2128389 - 2128334
Alignment:
Q  275 taagagtttatgcataatctatttctataacaagatataaaataaagtcaaattgt 330  Q
    |||| ||||||| |||| ||||||||||||||| | |||||||||||| |||||||    
T  2128389 taagcgtttatgtataagctatttctataacaaaagataaaataaagttaaattgt 2128334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 5430923 - 5430966
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgctt 268  Q
    |||| ||||||||||||||||||| ||||||| |||||||||||    
T  5430923 gtttggataagcaacttaattaagagcttatatcataagtgctt 5430966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 288 - 353
Target Start/End: Complemental strand, 49587041 - 49586978
Alignment:
Q  288 ataatctatttctataacaagatataaaataaagtcaaattgtgttttcacataagctatcctgga 353  Q
    |||| ||||||||||||||| | ||||||||||||||||   |||||||| |||||||||| ||||    
T  49587041 ataagctatttctataacaaaagataaaataaagtcaaa--ctgttttcatataagctatcttgga 49586978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 1395611 - 1395656
Alignment:
Q  283 tatgcataatctatttctataacaagatataaaataaagtcaaatt 328  Q
    |||| |||| ||||||||||||||| | ||||||||||||||||||    
T  1395611 tatgtataagctatttctataacaaaagataaaataaagtcaaatt 1395656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 22723948 - 22723981
Alignment:
Q  229 agataagcaacttaattaagcgcttatagcataa 262  Q
    |||||| |||||||||||||||||||||||||||    
T  22723948 agataaacaacttaattaagcgcttatagcataa 22723981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 347
Target Start/End: Complemental strand, 41029013 - 41028919
Alignment:
Q  251 cttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaattgtgttttcacataagctat 347  Q
    |||||||| ||| ||||| || | |||| | ||||| |||| ||||||||||||||| | | |||||||||||||  | |||||||| |||||||||    
T  41029013 cttatagcttaaatgcttatcatataagtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaa--tctgttttcaaataagctat 41028919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 225 - 330
Target Start/End: Original strand, 27458 - 27563
Alignment:
Q  225 gtttagataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtca 324  Q
    |||| ||||| |||||||| ||| |||||||||||||||  ||| || | |||| | ||||| ||||  |||||||||||||  | ||||||||||||||    
T  27458 gtttggataaacaacttaaataaacgcttatagcataagctcttatcatgtaagtgcttatgtataagttatttctataacagaagataaaataaagtca 27557  T
Q  325 aattgt 330  Q
    ||||||    
T  27558 aattgt 27563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 230 - 347
Target Start/End: Complemental strand, 29794105 - 29793991
Alignment:
Q  230 gataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaattg 329  Q
    ||||| || ||||||||||||||||||||||||||| || || | || | ||||||| |||  |||||| | |||||| | ||||||| |||||||||      
T  29794105 gataaacagcttaattaagcgcttatagcataagtgtttttcatatatgtgtttatgtataggctatttttgtaacaaaagataaaat-aagtcaaat-- 29794009  T
Q  330 tgttttcacataagctat 347  Q
    |||||||| |||||||||    
T  29794008 tgttttcaaataagctat 29793991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 30259618 - 30259574
Alignment:
Q  282 ttatgcataatctatttctataacaagatataaaataaagtcaaa 326  Q
    ||||||| || ||||||||||||||| ||||||||||||||||||    
T  30259618 ttatgcacaagctatttctataacaaaatataaaataaagtcaaa 30259574  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 12519100 - 12519053
Alignment:
Q  283 tatgcataatctatttctataacaagatataaaataaagtcaaattgt 330  Q
    |||| |||||||| |||||||||||  |||||||||||||||||||||    
T  12519100 tatgtataatctacttctataacaatgtataaaataaagtcaaattgt 12519053  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 353
Target Start/End: Complemental strand, 26293234 - 26293170
Alignment:
Q  285 tgcataatctatttctataacaagatataaaataaagtcaaattgtgttttcacataagctatcctgga 353  Q
    ||||||| ||||||||||||||| |  ||||||||||||||||||| ||    ||||||||||||||||    
T  26293234 tgcataagctatttctataacaaaaagtaaaataaagtcaaattgtttt----cataagctatcctgga 26293170  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 230 - 347
Target Start/End: Complemental strand, 43372142 - 43372027
Alignment:
Q  230 gataagcaacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaattg 329  Q
    ||||| |||||||  ||| ||| ||||||||||| |||| || | |||  | ||||| |||  ||||||||||||||| | |||||||| ||||||||      
T  43372142 gataaacaacttaggtaaacgcctatagcataagcgcttatcatataatggcttatgtataggctatttctataacaatagataaaatagagtcaaat-- 43372045  T
Q  330 tgttttcacataagctat 347  Q
    | ||||||||||||||||    
T  43372044 tattttcacataagctat 43372027  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 15687193 - 15687156
Alignment:
Q  293 ctatttctataacaagatataaaataaagtcaaattgt 330  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  15687193 ctatttctataacaaaatataaaataaagttaaattgt 15687156  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 326
Target Start/End: Original strand, 23895230 - 23895319
Alignment:
Q  237 aacttaattaagcgcttatagcataagtgcttgtcgtttaagagtttatgcataatctatttctataacaagatataaaataaagtcaaa 326  Q
    ||||||||||||| |||| ||||||||  ||| || | ||||   ||||| |||| ||||||||||||||| | |||||||||| |||||    
T  23895230 aacttaattaagcacttaaagcataagcccttatcatataagttattatgtataagctatttctataacaaaagataaaataaattcaaa 23895319  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 36151637 - 36151588
Alignment:
Q  281 tttatgcataatctatttctataacaagatataaaataaagtcaaattgt 330  Q
    |||||| |||| ||||||| ||||||| | ||||||||||||||||||||    
T  36151637 tttatgtataagctatttcaataacaaaagataaaataaagtcaaattgt 36151588  T

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