View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5408-Insertion-3 (Length: 506)

Name: NF5408-Insertion-3
Description: NF5408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5408-Insertion-3
NF5408-Insertion-3
[»] chr6 (13 HSPs)
chr6 (7-257)||(1077946-1078196)
chr6 (302-419)||(1067711-1067829)
chr6 (253-307)||(444600-444654)
chr6 (253-307)||(1067880-1067934)
chr6 (253-307)||(23774148-23774202)
chr6 (253-307)||(4032283-4032337)
chr6 (253-307)||(2814845-2814900)
chr6 (253-305)||(2993546-2993598)
chr6 (253-307)||(6200118-6200172)
chr6 (253-297)||(12324248-12324292)
chr6 (432-463)||(1067664-1067695)
chr6 (302-339)||(12324164-12324201)
chr6 (143-211)||(32004129-32004197)
[»] chr8 (23 HSPs)
chr8 (253-307)||(39436920-39436974)
chr8 (253-307)||(21567786-21567840)
chr8 (253-307)||(23404194-23404248)
chr8 (252-305)||(3001330-3001383)
chr8 (253-307)||(14842387-14842441)
chr8 (257-307)||(16656057-16656107)
chr8 (253-307)||(36470091-36470145)
chr8 (258-307)||(37630081-37630130)
chr8 (253-307)||(4623806-4623860)
chr8 (253-307)||(29958470-29958524)
chr8 (253-307)||(30204604-30204658)
chr8 (253-307)||(41787575-41787629)
chr8 (302-339)||(22798533-22798570)
chr8 (302-339)||(37629994-37630031)
chr8 (302-336)||(16655973-16656007)
chr8 (300-330)||(21567708-21567738)
chr8 (253-307)||(36046485-36046539)
chr8 (253-287)||(45309970-45310004)
chr8 (302-339)||(4623910-4623947)
chr8 (302-330)||(4414227-4414255)
chr8 (302-338)||(23275587-23275623)
chr8 (302-338)||(23403591-23403627)
chr8 (302-338)||(30204708-30204744)
[»] chr5 (19 HSPs)
chr5 (253-307)||(20736114-20736168)
chr5 (253-307)||(38450995-38451049)
chr5 (255-307)||(39508274-39508326)
chr5 (253-307)||(9793591-9793645)
chr5 (253-307)||(41910174-41910228)
chr5 (295-337)||(38451081-38451123)
chr5 (253-307)||(3729287-3729343)
chr5 (302-339)||(3729393-3729430)
chr5 (258-307)||(21020762-21020811)
chr5 (302-345)||(9793792-9793835)
chr5 (302-336)||(3711177-3711211)
chr5 (253-295)||(9913893-9913935)
chr5 (302-336)||(41929336-41929370)
chr5 (253-307)||(8159024-8159080)
chr5 (302-335)||(20736218-20736251)
chr5 (302-339)||(34766944-34766981)
chr5 (270-307)||(41929420-41929457)
chr5 (302-330)||(2068964-2068992)
chr5 (302-330)||(39508376-39508404)
[»] chr1 (18 HSPs)
chr1 (253-307)||(18808857-18808911)
chr1 (253-307)||(3695485-3695539)
chr1 (253-307)||(36290670-36290724)
chr1 (253-307)||(41998835-41998889)
chr1 (252-305)||(26653893-26653946)
chr1 (253-305)||(44272311-44272363)
chr1 (253-307)||(6750266-6750320)
chr1 (265-307)||(7409791-7409833)
chr1 (302-336)||(44272418-44272452)
chr1 (253-306)||(24909464-24909517)
chr1 (253-305)||(571730-571782)
chr1 (253-305)||(794996-795048)
chr1 (302-336)||(6750370-6750404)
chr1 (253-307)||(37262381-37262435)
chr1 (302-331)||(9224884-9224913)
chr1 (302-339)||(24909568-24909605)
chr1 (302-347)||(39001931-39001976)
chr1 (302-338)||(41998939-41998975)
[»] chr7 (8 HSPs)
chr7 (253-307)||(43403167-43403221)
chr7 (254-307)||(40337023-40337076)
chr7 (253-307)||(28089213-28089267)
chr7 (253-307)||(2362338-2362392)
chr7 (253-307)||(8163599-8163653)
chr7 (253-307)||(31637793-31637847)
chr7 (253-305)||(35589361-35589413)
chr7 (302-330)||(40337126-40337154)
[»] chr4 (18 HSPs)
chr4 (253-307)||(21555459-21555513)
chr4 (253-307)||(827908-827962)
chr4 (253-307)||(23249549-23249603)
chr4 (253-307)||(36609369-36609423)
chr4 (254-307)||(19598446-19598499)
chr4 (253-305)||(41842870-41842922)
chr4 (253-307)||(33862385-33862439)
chr4 (253-307)||(53583427-53583481)
chr4 (253-305)||(44243652-44243704)
chr4 (253-307)||(12701117-12701171)
chr4 (253-307)||(27733455-27733508)
chr4 (253-307)||(35749464-35749518)
chr4 (302-339)||(53584626-53584663)
chr4 (302-337)||(35929701-35929736)
chr4 (258-295)||(56100099-56100136)
chr4 (302-330)||(19598368-19598396)
chr4 (275-307)||(35929786-35929818)
chr4 (302-330)||(56100198-56100226)
[»] chr3 (17 HSPs)
chr3 (253-307)||(3618296-3618350)
chr3 (253-307)||(39392036-39392090)
chr3 (253-305)||(16353443-16353495)
chr3 (253-307)||(29360561-29360615)
chr3 (258-307)||(37115848-37115897)
chr3 (253-307)||(35534561-35534615)
chr3 (253-307)||(36404178-36404232)
chr3 (253-307)||(46487348-46487402)
chr3 (253-307)||(54882948-54883002)
chr3 (270-306)||(48944078-48944114)
chr3 (253-307)||(14202115-14202169)
chr3 (302-338)||(14201710-14201746)
chr3 (302-346)||(45602969-45603013)
chr3 (302-337)||(39391951-39391986)
chr3 (302-335)||(37115947-37115980)
chr3 (258-307)||(52742431-52742480)
chr3 (302-338)||(52742345-52742381)
[»] chr2 (24 HSPs)
chr2 (253-307)||(7747901-7747955)
chr2 (253-307)||(21423444-21423498)
chr2 (253-307)||(37802792-37802846)
chr2 (253-307)||(5959045-5959099)
chr2 (253-307)||(6974473-6974527)
chr2 (253-307)||(14786313-14786367)
chr2 (253-307)||(28107444-28107498)
chr2 (253-307)||(30609642-30609696)
chr2 (253-305)||(27404579-27404631)
chr2 (253-305)||(30393546-30393598)
chr2 (253-307)||(4382286-4382340)
chr2 (253-307)||(15431309-15431363)
chr2 (253-306)||(15070346-15070399)
chr2 (253-307)||(10217311-10217365)
chr2 (253-295)||(27969578-27969620)
chr2 (253-307)||(27004528-27004584)
chr2 (302-338)||(37060139-37060175)
chr2 (302-337)||(37140194-37140229)
chr2 (253-307)||(24475888-24475942)
chr2 (302-331)||(30393652-30393681)
chr2 (302-330)||(5958967-5958995)
chr2 (302-330)||(6974577-6974605)
chr2 (302-330)||(21423366-21423394)
chr2 (302-330)||(24475992-24476020)
[»] scaffold0302 (1 HSPs)
scaffold0302 (253-307)||(18459-18513)
[»] scaffold0532 (2 HSPs)
scaffold0532 (253-306)||(11399-11452)
scaffold0532 (302-331)||(11319-11348)
[»] scaffold0121 (1 HSPs)
scaffold0121 (253-307)||(37358-37413)
[»] scaffold0306 (2 HSPs)
scaffold0306 (253-307)||(13012-13066)
scaffold0306 (302-330)||(13116-13144)
[»] scaffold0152 (2 HSPs)
scaffold0152 (253-307)||(22261-22315)
scaffold0152 (302-330)||(22183-22211)
[»] scaffold1248 (1 HSPs)
scaffold1248 (258-307)||(1047-1096)
[»] scaffold0952 (1 HSPs)
scaffold0952 (258-307)||(1217-1266)
[»] scaffold0025 (1 HSPs)
scaffold0025 (253-288)||(67971-68006)
[»] scaffold0293 (1 HSPs)
scaffold0293 (253-307)||(1793-1847)
[»] scaffold0037 (1 HSPs)
scaffold0037 (253-307)||(40975-41029)


Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 7 - 257
Target Start/End: Complemental strand, 1078196 - 1077946
Alignment:
Q  7 atggtgtttaaggtgagacttcttttaataataaacaaattagagtaattagaaaatttaggaaaaagcaaaataatcaaagagtaccagggacgggttg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1078196 atggtgtttaaggtgagacttcttttaataataaacaaattagagtaattagaaaatttaggaaaaagcaaaataatcaaagagtaccagggacgggttg 1078097  T
Q  107 ttataaaatgcttgggtaggtcataggcgtacctatgtgtttcaattaaattatagaaattcaaaggttgattcaattccatttagagtttatgaagttt 206  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1078096 ttataaaatgcttgggtaggccataggtgtacctatgtgtttcaattaaattatagaaattcaaaggttgattcaattccatttagagtttatgaagttt 1077997  T
Q  207 taaagaaactaaaattcatgagtttcaacttgattactcttccaaataaaa 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1077996 taaagaaactaaaattcatgagtttcaacttgattactcttccaaataaaa 1077946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 302 - 419
Target Start/End: Complemental strand, 1067829 - 1067711
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaaagtttttgaaactgtgatggctcaagattttcacaac-gagtgtttcaatgtctttttatagt 400  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  1067829 aaaactgaaaacaaaaactatttcaaacaagctctaaggtttttgaaactgtgatggctcaagattttcacaactgagtgtctcaatgtctttttatagt 1067730  T
Q  401 ttaattcttcattcttggc 419  Q
    |||||||||||||||||||    
T  1067729 ttaattcttcattcttggc 1067711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 444654 - 444600
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  444654 taaaattacagttttggaaactgttttgaattttttagttttggggactaaaact 444600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 1067934 - 1067880
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  1067934 taaaattacagttttggaaactgttttgaattttttagttttggggactaaaact 1067880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 23774202 - 23774148
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  23774202 taaaattacagttttggaaactgttttgaattttttaattttggggattaaaact 23774148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 4032283 - 4032337
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| ||||| |||| |||||||||||||||||||||||||||    
T  4032283 taaaattacagttttgaaaactattttaaattttttaattttggggactaaaact 4032337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 2814845 - 2814900
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaa-ttttttaattttggggactaaaact 307  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  2814845 taaaattacagttttggaaactgttttgaatttttttagttttggggactaaaact 2814900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 2993546 - 2993598
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaa 305  Q
    |||||||||||||||  |||||||||||||||||||| ||||||| |||||||    
T  2993546 taaaattacagtttttgaaactgttttgaattttttagttttgggtactaaaa 2993598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 6200118 - 6200172
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    ||||||||||| |||| ||| |||||||||||||||| |||||| ||||||||||    
T  6200118 taaaattacaggtttggaaattgttttgaattttttagttttggagactaaaact 6200172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 12324292 - 12324248
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggg 297  Q
    |||||||||||| ||| |||||||||||||||||||| |||||||    
T  12324292 taaaattacagtgttggaaactgttttgaattttttacttttggg 12324248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 463
Target Start/End: Complemental strand, 1067695 - 1067664
Alignment:
Q  432 aaagattgttacgcttgaaacgtcggtcaaga 463  Q
    ||||||||||||||||||||||||||||||||    
T  1067695 aaagattgttacgcttgaaacgtcggtcaaga 1067664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 12324201 - 12324164
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaaa 339  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  12324201 aaaactgaaaacaaaaactacttcaaacaggctctaaa 12324164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 32004129 - 32004197
Alignment:
Q  143 gtgtttcaattaaattatagaaattcaaaggttgattcaattccatttagagtttatgaagttttaaag 211  Q
    ||||||||||||||  ||||||||| ||||||||| ||| || |  |||||||||||||| ||| ||||    
T  32004129 gtgtttcaattaaaagatagaaatttaaaggttgaatcactttcgattagagtttatgaattttcaaag 32004197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 39436974 - 39436920
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39436974 taaaattacagttttgaaaactgttttgaattttttaattttggggactaaaact 39436920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 21567840 - 21567786
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  21567840 taaaattacagttttggaaattgttttgaattttttaattttggggactaaaact 21567786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 23404248 - 23404194
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  23404248 taaaattacagttttggaaactgttttgaattttttagttttggggactaaaact 23404194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 3001330 - 3001383
Alignment:
Q  252 ataaaattacagttttgtaaactgttttgaattttttaattttggggactaaaa 305  Q
    ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  3001330 ataaaattacagttttggaaactgttttgaattttttagttttgaggactaaaa 3001383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 14842441 - 14842387
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||| ||||||| |||||||||||||||||||| ||||||||| |||||||    
T  14842441 taaaattatagttttggaaactgttttgaattttttagttttggggattaaaact 14842387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 16656107 - 16656057
Alignment:
Q  257 attacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||| |||||||||||||||||||| ||||| |||||||||||    
T  16656107 attacagttttggaaactgttttgaattttttagttttgaggactaaaact 16656057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 36470091 - 36470145
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||| ||||| ||| |||||||||||||||| |||||||||||||||||    
T  36470091 taaaattacaattttgaaaattgttttgaattttttagttttggggactaaaact 36470145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 37630130 - 37630081
Alignment:
Q  258 ttacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||||||    
T  37630130 ttacagttttggaaactgttttgaattttttagttttgaggactaaaact 37630081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 4623806 - 4623860
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||| ||||||||||||||| ||| | |||||||||||    
T  4623806 taaaattacagttttggaaacagttttgaattttttagtttggaggactaaaact 4623860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 29958470 - 29958524
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||| ||||| |||||||||||||||||||| ||||| ||| |||||||    
T  29958470 taaaattacaattttggaaactgttttgaattttttagttttgaggattaaaact 29958524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 30204604 - 30204658
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||| ||||| ||||||||||||| |||||| |||||| ||||||||||    
T  30204604 taaaattacaattttggaaactgttttgaactttttagttttggagactaaaact 30204658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 41787629 - 41787575
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| ||||||||| |||||||||||||||   ||||||||||    
T  41787629 taaaattacagttttggaaactgtttcgaattttttaattttaaagactaaaact 41787575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 22798570 - 22798533
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaaa 339  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  22798570 aaaactgaaaacaaaaactatttcaaacaggctctaaa 22798533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 37630031 - 37629994
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaaa 339  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  37630031 aaaactgaaaacaaaaactatttcaaacaggctctaaa 37629994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 336
Target Start/End: Complemental strand, 16656007 - 16655973
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctct 336  Q
    ||||||||||||||||||||||||||||| |||||    
T  16656007 aaaactgaaaacaaaaactatttcaaacaggctct 16655973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 21567738 - 21567708
Alignment:
Q  300 ctaaaactgaaaacaaaaactatttcaaaca 330  Q
    |||||||||||||||||||||||||||||||    
T  21567738 ctaaaactgaaaacaaaaactatttcaaaca 21567708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 36046485 - 36046539
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||  ||||| ||||||| |||||| ||||||||| |||||||    
T  36046485 taaaattacagtttttgaaactattttgaactttttagttttggggattaaaact 36046539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 45309970 - 45310004
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttt 287  Q
    |||||||||||||||| ||||||||||||||||||    
T  45309970 taaaattacagttttggaaactgttttgaattttt 45310004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 4623910 - 4623947
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaaa 339  Q
    |||||||||||||||||||||||||||||  |||||||    
T  4623910 aaaactgaaaacaaaaactatttcaaacagtctctaaa 4623947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 4414255 - 4414227
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaaca 330  Q
    |||||||||||||||||||||||||||||    
T  4414255 aaaactgaaaacaaaaactatttcaaaca 4414227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 23275587 - 23275623
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaa 338  Q
    ||||||||||||||||||||||||||| | |||||||    
T  23275587 aaaactgaaaacaaaaactatttcaaagaggctctaa 23275623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 23403627 - 23403591
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaa 338  Q
    ||||||||||||||||||||||||||| | |||||||    
T  23403627 aaaactgaaaacaaaaactatttcaaataggctctaa 23403591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 30204708 - 30204744
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaa 338  Q
    ||||||||||||||||||||||||||| | |||||||    
T  30204708 aaaactgaaaacaaaaactatttcaaagaggctctaa 30204744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 20736114 - 20736168
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20736114 taaaattacagttttggaaactgttttgaattttttaattttggggactaaaact 20736168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 38450995 - 38451049
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38450995 taaaattacagttttggaaactgttttgaattttttaattttggggactaaaact 38451049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 39508274 - 39508326
Alignment:
Q  255 aaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  39508274 aaattacagttttggaaactgttttgaattttttagttttggggactaaaact 39508326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 9793591 - 9793645
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| ||||||||||||| |||||| |||||||||||||||||    
T  9793591 taaaattacagttttggaaactgttttgaactttttagttttggggactaaaact 9793645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 41910174 - 41910228
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  41910174 taaaattacagttttggaaactgttttgaattttttagttttggagactaaaact 41910228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 337
Target Start/End: Original strand, 38451081 - 38451123
Alignment:
Q  295 ggggactaaaactgaaaacaaaaactatttcaaacaagctcta 337  Q
    ||||||| |||||||||||||||||||||||||||| ||||||    
T  38451081 ggggacttaaactgaaaacaaaaactatttcaaacaggctcta 38451123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 3729287 - 3729343
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaa--ttttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||  ||||||| ||||| |||||||||||    
T  3729287 taaaattacagttttggaaactgttttgaattttttttagttttgaggactaaaact 3729343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 3729393 - 3729430
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaaa 339  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  3729393 aaaactgaaaacaaaaactatttcaaacaggctctaaa 3729430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 21020811 - 21020762
Alignment:
Q  258 ttacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    ||||||||||  |||||||||||||||||||| ||||| |||||||||||    
T  21020811 ttacagtttttgaaactgttttgaattttttagttttgaggactaaaact 21020762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 345
Target Start/End: Original strand, 9793792 - 9793835
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaaagttttt 345  Q
    ||||||||||||||||||||||||||||| ||||| || |||||    
T  9793792 aaaactgaaaacaaaaactatttcaaacaggctcttaatttttt 9793835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 336
Target Start/End: Complemental strand, 3711211 - 3711177
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctct 336  Q
    ||||||||||||||||||||||||||||| |||||    
T  3711211 aaaactgaaaacaaaaactatttcaaacatgctct 3711177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 9913935 - 9913893
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttg 295  Q
    |||||||||| ||||| |||||||||||||||||||| |||||    
T  9913935 taaaattacaattttggaaactgttttgaattttttagttttg 9913893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 336
Target Start/End: Complemental strand, 41929370 - 41929336
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctct 336  Q
    ||||||||||||||||||||||||||||| |||||    
T  41929370 aaaactgaaaacaaaaactatttcaaacaggctct 41929336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 8159024 - 8159080
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaa--ttttttaattttggggactaaaact 307  Q
    |||||||||||||||| ||||||||| |||  ||||||| ||||| |||||||||||    
T  8159024 taaaattacagttttggaaactgtttcgaattttttttagttttgaggactaaaact 8159080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 20736218 - 20736251
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctc 335  Q
    |||| |||||||||||||||||||||||||||||    
T  20736218 aaaattgaaaacaaaaactatttcaaacaagctc 20736251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 34766944 - 34766981
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaaa 339  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  34766944 aaaattgaaaacaaaaactatttcaaacaggctctaaa 34766981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 41929457 - 41929420
Alignment:
Q  270 aaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  41929457 aaactgttttgaattttttagttttgaggactaaaact 41929420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 2068992 - 2068964
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaaca 330  Q
    |||||||||||||||||||||||||||||    
T  2068992 aaaactgaaaacaaaaactatttcaaaca 2068964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 39508376 - 39508404
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaaca 330  Q
    |||||||||||||||||||||||||||||    
T  39508376 aaaactgaaaacaaaaactatttcaaaca 39508404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 18808911 - 18808857
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18808911 taaaattacagttttgtaaactgttttgaattttttagttttggggactaaaact 18808857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 3695539 - 3695485
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  3695539 taaaattacagttttgaaaactgttttgaattttttagttttggggactaaaact 3695485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 36290724 - 36290670
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  36290724 taaaattacagtttttgaaactgttttgaattttttagttttggggactaaaact 36290670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 41998835 - 41998889
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| |||||||||    
T  41998835 taaaattacagttttggaaactgttttgaattttttagttttgggtactaaaact 41998889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 26653893 - 26653946
Alignment:
Q  252 ataaaattacagttttgtaaactgttttgaattttttaattttggggactaaaa 305  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||    
T  26653893 ataaaattacagttttggaaactgttttgaattttttagttttgggaactaaaa 26653946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 44272311 - 44272363
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaa 305  Q
    |||||||||||||||  ||||||||| |||||||||| |||||||||||||||    
T  44272311 taaaattacagtttttgaaactgtttagaattttttagttttggggactaaaa 44272363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 6750266 - 6750320
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||| ||| ||||||||||||| |||||| ||||| |||||||||||    
T  6750266 taaaattacagtattggaaactgttttgaactttttagttttgaggactaaaact 6750320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 7409791 - 7409833
Alignment:
Q  265 tttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||| |||||||||||||||||||| |||||||||||||||||    
T  7409791 tttggaaactgttttgaattttttagttttggggactaaaact 7409833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 336
Target Start/End: Original strand, 44272418 - 44272452
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctct 336  Q
    |||||||||||||||||||||||||||||||||||    
T  44272418 aaaactgaaaacaaaaactatttcaaacaagctct 44272452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 24909464 - 24909517
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaac 306  Q
    |||||||||||||||  ||||||||||||| |||||| ||||||| ||||||||    
T  24909464 taaaattacagttttagaaactgttttgaaatttttagttttgggaactaaaac 24909517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 571782 - 571730
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaa 305  Q
    ||||| || ||||||  ||||| ||||||||||||||||||||||||||||||    
T  571782 taaaaatatagttttagaaactattttgaattttttaattttggggactaaaa 571730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 795048 - 794996
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaa 305  Q
    |||||||||||||||| ||||||||| |||||||||| |||| | ||||||||    
T  795048 taaaattacagttttgaaaactgtttagaattttttagttttagagactaaaa 794996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 336
Target Start/End: Original strand, 6750370 - 6750404
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctct 336  Q
    ||||||||||||||||||||||||||||| |||||    
T  6750370 aaaactgaaaacaaaaactatttcaaacaggctct 6750404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 37262381 - 37262435
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||| |||||  ||||||||||||||||||| ||||||  |||||||||    
T  37262381 taaaattacatttttgagaactgttttgaattttttagttttggaaactaaaact 37262435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 331
Target Start/End: Original strand, 9224884 - 9224913
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaa 331  Q
    ||||||||||||||||||||||||||||||    
T  9224884 aaaactgaaaacaaaaactatttcaaacaa 9224913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 24909568 - 24909605
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaaa 339  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  24909568 aaaactgaaaataaaaactatttcaaacaggctctaaa 24909605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 39001976 - 39001931
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaaagtttttga 347  Q
    ||||||||||||||||||||||||||||| ||| | |||| |||||    
T  39001976 aaaactgaaaacaaaaactatttcaaacaggctattaagtgtttga 39001931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 41998939 - 41998975
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaa 338  Q
    |||| |||||||||||||||||||||||| |||||||    
T  41998939 aaaaatgaaaacaaaaactatttcaaacaggctctaa 41998975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 43403167 - 43403221
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  43403167 taaaattacagttttggaaactgttttgaattttttagttttggggactaaaact 43403221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 40337023 - 40337076
Alignment:
Q  254 aaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  40337023 aaaattacagttttggaaactgttttgaattttttagttttggggactaaaact 40337076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 28089267 - 28089213
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| ||| |||||||||||||||| |||||||||||||||||    
T  28089267 taaaattacagttttgaaaattgttttgaattttttagttttggggactaaaact 28089213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 2362338 - 2362392
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| ||||| |||||||||||||| |||| | ||||||||||    
T  2362338 taaaattacagttttgaaaactattttgaattttttagtttttgagactaaaact 2362392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 8163599 - 8163653
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||| ||||  |||||||||| |||||||||||||||| ||||||||||    
T  8163599 taaaattacaatttttgaaactgttttaaattttttaattttggagactaaaact 8163653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 31637847 - 31637793
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||| ||||||||||||||   ||||||||||    
T  31637847 taaaattacagttttggaaactgttttaaattttttaattttaaagactaaaact 31637793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 35589361 - 35589413
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaa 305  Q
    |||||||||||||||| |||| ||||||||| ||||| |||||| ||||||||    
T  35589361 taaaattacagttttggaaacagttttgaatattttagttttggagactaaaa 35589413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 40337126 - 40337154
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaaca 330  Q
    |||||||||||||||||||||||||||||    
T  40337126 aaaactgaaaacaaaaactatttcaaaca 40337154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 21555513 - 21555459
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  21555513 taaaattacagttttggaaactgttttgaattttttagttttggggactaaaact 21555459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 827962 - 827908
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  827962 taaaattacagttttggaaactgttttgaattttttagttttggagactaaaact 827908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 23249603 - 23249549
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||| ||| |||||||||||||||||    
T  23249603 taaaattacagttttggaaactgttttgaatttcttagttttggggactaaaact 23249549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 36609369 - 36609423
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  36609369 taaaattacagtttttgaaactgttttgaattttttagttttggggactaaaact 36609423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 19598499 - 19598446
Alignment:
Q  254 aaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    ||||||||||||||| |||||||||| ||||||||| |||||||||||||||||    
T  19598499 aaaattacagttttgaaaactgttttaaattttttagttttggggactaaaact 19598446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 41842922 - 41842870
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaa 305  Q
    |||||||||||||||| |||||||||||||||||||| |||||| ||||||||    
T  41842922 taaaattacagttttggaaactgttttgaattttttagttttggagactaaaa 41842870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 33862439 - 33862385
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    ||||||||||| |||| |||||||||||||||||||| |||||||||||| ||||    
T  33862439 taaaattacagatttggaaactgttttgaattttttagttttggggactagaact 33862385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 53583427 - 53583481
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||| |||||||||| |||| |||||||||||||||||    
T  53583427 taaaattacagttttggaaacagttttgaattatttagttttggggactaaaact 53583481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 44243652 - 44243704
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaa 305  Q
    |||||||||| ||||| |||||||||||||||||||| ||||| |||||||||    
T  44243652 taaaattacaattttggaaactgttttgaattttttagttttgtggactaaaa 44243704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 12701171 - 12701117
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||  |||||||||||||| |||| |||||||||||    
T  12701171 taaaattacagttttggaaactaatttgaattttttaagtttgaggactaaaact 12701117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 27733508 - 27733455
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||| ||||||| ||||||||||||||||||||| |||| |||||||||||    
T  27733508 taaaattatagttttggaaactgttttgaattttttaa-tttgaggactaaaact 27733455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 35749518 - 35749464
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| ||||||||||||| |||||| |||||  ||||||||||    
T  35749518 taaaattacagttttggaaactgttttgaagtttttagttttgacgactaaaact 35749464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 53584626 - 53584663
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaaa 339  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  53584626 aaaactgaaaacaaaaactatttcaaacatgctctaaa 53584663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 337
Target Start/End: Complemental strand, 35929736 - 35929701
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctcta 337  Q
    ||||||||||||||||||||||||||||| ||||||    
T  35929736 aaaactgaaaacaaaaactatttcaaacaggctcta 35929701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 56100099 - 56100136
Alignment:
Q  258 ttacagttttgtaaactgttttgaattttttaattttg 295  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  56100099 ttacagttttggaaactgttttgaattttttagttttg 56100136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 19598396 - 19598368
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaaca 330  Q
    |||||||||||||||||||||||||||||    
T  19598396 aaaactgaaaacaaaaactatttcaaaca 19598368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 35929818 - 35929786
Alignment:
Q  275 gttttgaattttttaattttggggactaaaact 307  Q
    ||||||||||||||| |||||||||||||||||    
T  35929818 gttttgaattttttagttttggggactaaaact 35929786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 56100198 - 56100226
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaaca 330  Q
    |||||||||||||||||||||||||||||    
T  56100198 aaaactgaaaacaaaaactatttcaaaca 56100226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 3618296 - 3618350
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  3618296 taaaattacagttttggaaactgttttgaattttttagttttggggactaaaact 3618350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 39392090 - 39392036
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  39392090 taaaattacagtttttgaaactgttttgaattttttaattttggggactaaaact 39392036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 16353443 - 16353495
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaa 305  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  16353443 taaaattacagttttggaaactgttttgaattttttagttttggggactaaaa 16353495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 29360615 - 29360561
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| ||||| |||| |||||||||||||||||||||||||||    
T  29360615 taaaattacagttttggaaactattttaaattttttaattttggggactaaaact 29360561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 37115848 - 37115897
Alignment:
Q  258 ttacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  37115848 ttacagttttggaaactgttttgaattttttaattttgaggactaaaact 37115897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 35534615 - 35534561
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||  |||||| ||||||||||||||||||||| |||||||||    
T  35534615 taaaattacagtttttgaaactgctttgaattttttaattttgggaactaaaact 35534561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 36404178 - 36404232
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||| ||||||||  |||||||||||||||||||| |||||||||||||||||    
T  36404178 taaaataacagtttttgaaactgttttgaattttttagttttggggactaaaact 36404232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 46487402 - 46487348
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||| ||||  ||||||||||||||||||||||||| ||||||||||||    
T  46487402 taaaattacaattttagaaactgttttgaattttttaattttagggactaaaact 46487348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 54882948 - 54883002
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| ||||| |||||||||||||| |||| ||||||||||||    
T  54882948 taaaattacagttttggaaactattttgaattttttagttttagggactaaaact 54883002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 48944078 - 48944114
Alignment:
Q  270 aaactgttttgaattttttaattttggggactaaaac 306  Q
    |||||||||||||||||||||||||||||||||||||    
T  48944078 aaactgttttgaattttttaattttggggactaaaac 48944114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 14202169 - 14202115
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||  |||||||||| ||||||||| |||||| ||||||||||    
T  14202169 taaaattacagtttttgaaactgttttaaattttttagttttggagactaaaact 14202115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 14201746 - 14201710
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaa 338  Q
    ||||||||||||||||||||||||||||| |||||||    
T  14201746 aaaactgaaaacaaaaactatttcaaacaggctctaa 14201710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 45603013 - 45602969
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaaagtttttg 346  Q
    |||||||||||||||||||||||||||||  ||||||| ||||||    
T  45603013 aaaactgaaaacaaaaactatttcaaacagactctaaattttttg 45602969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 337
Target Start/End: Complemental strand, 39391986 - 39391951
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctcta 337  Q
    |||||||||||||||||||||||||||||| |||||    
T  39391986 aaaactgaaaacaaaaactatttcaaacaatctcta 39391951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 37115947 - 37115980
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctc 335  Q
    ||||||||||||||||||||||||||||| ||||    
T  37115947 aaaactgaaaacaaaaactatttcaaacaggctc 37115980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 52742480 - 52742431
Alignment:
Q  258 ttacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    ||||||||||| |||||| ||||||||||||| ||||| ||| |||||||    
T  52742480 ttacagttttggaaactgctttgaattttttagttttgaggattaaaact 52742431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 52742381 - 52742345
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaa 338  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  52742381 aaaactggaaacaaaaactatttcaaacaggctctaa 52742345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 7747901 - 7747955
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  7747901 taaaattacagttttggaaactgttttgaattttttagttttggggactaaaact 7747955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 21423498 - 21423444
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  21423498 taaaattacagttttgaaaactgttttgaattttttaatgttggggactaaaact 21423444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 37802792 - 37802846
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  37802792 taaaattacagttttggaaactgttttgaattttttagttttggggactaaaact 37802846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 5959099 - 5959045
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||| ||| |||||||||||||||||    
T  5959099 taaaattacagttttggaaactgttttgaatttcttagttttggggactaaaact 5959045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 6974473 - 6974527
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||    
T  6974473 taaaattacagttttggaaactgttttgaattttttagttttgaggactaaaact 6974527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 14786367 - 14786313
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||| ||||| |||||||||||||||||||| |||||||||||||||||    
T  14786367 taaaattacaattttggaaactgttttgaattttttagttttggggactaaaact 14786313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 28107444 - 28107498
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||| |||||||    
T  28107444 taaaattacagttttggaaactgttttgaattttttagttttggggattaaaact 28107498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 30609642 - 30609696
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||    
T  30609642 taaaattacagttttggaaactgttttgaattttttagttttgaggactaaaact 30609696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 27404579 - 27404631
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaa 305  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||||||||    
T  27404579 taaaattacagttttagaaactgttttgaattttttagttttggggactaaaa 27404631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 30393546 - 30393598
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaa 305  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||||||||    
T  30393546 taaaattacagtttttgaaactgttttgaattttttagttttggggactaaaa 30393598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 4382340 - 4382286
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    ||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||    
T  4382340 taaaattacagatttggaaactgttttgaattttttagttttagggactaaaact 4382286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 15431363 - 15431309
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    ||||||| |||||||| |||||||||||||||||||| ||||||||| |||||||    
T  15431363 taaaatttcagttttgaaaactgttttgaattttttagttttggggattaaaact 15431309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 15070346 - 15070399
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaac 306  Q
    |||||||||||||||  |||||||||| ||||||||| ||||||||||||||||    
T  15070346 taaaattacagttttcgaaactgttttaaattttttagttttggggactaaaac 15070399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 10217311 - 10217365
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||| | ||||||||||||| |||||| ||||||| |||||||||    
T  10217311 taaaattacagtttggaaaactgttttgaactttttagttttgggaactaaaact 10217365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 27969620 - 27969578
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttg 295  Q
    |||||||||| ||||| ||||||||||||||||||||||||||    
T  27969620 taaaattacaattttggaaactgttttgaattttttaattttg 27969578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 27004584 - 27004528
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaatt--ttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||  ||||| |||| ||||||||||||    
T  27004584 taaaattacagttttggaaactgttttgaattttttttagttttagggactaaaact 27004528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 37060139 - 37060175
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctctaa 338  Q
    ||||||||||||||||||||||||||||| |||||||    
T  37060139 aaaactgaaaacaaaaactatttcaaacaggctctaa 37060175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 337
Target Start/End: Original strand, 37140194 - 37140229
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaagctcta 337  Q
    ||||||||||||||||||||||||||||| ||||||    
T  37140194 aaaactgaaaacaaaaactatttcaaacaggctcta 37140229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 24475888 - 24475942
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    ||||||||||  |||| |||||||||||||||||||| |||||| || |||||||    
T  24475888 taaaattacaactttgaaaactgttttgaattttttagttttggagattaaaact 24475942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 331
Target Start/End: Original strand, 30393652 - 30393681
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaa 331  Q
    ||||||||||||||||||||||||||||||    
T  30393652 aaaactgaaaacaaaaactatttcaaacaa 30393681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 5958995 - 5958967
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaaca 330  Q
    |||||||||||||||||||||||||||||    
T  5958995 aaaactgaaaacaaaaactatttcaaaca 5958967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 6974577 - 6974605
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaaca 330  Q
    |||||||||||||||||||||||||||||    
T  6974577 aaaactgaaaacaaaaactatttcaaaca 6974605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 21423394 - 21423366
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaaca 330  Q
    |||||||||||||||||||||||||||||    
T  21423394 aaaactgaaaacaaaaactatttcaaaca 21423366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 24475992 - 24476020
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaaca 330  Q
    |||||||||||||||||||||||||||||    
T  24475992 aaaactgaaaacaaaaactatttcaaaca 24476020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 18459 - 18513
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||    
T  18459 taaaattacagttttgaaaactgttttgaattttttagttttgaggactaaaact 18513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 11452 - 11399
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaac 306  Q
    |||||||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  11452 taaaattacagttttagaaactgttttgaattttttagttttggggactaaaac 11399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 331
Target Start/End: Complemental strand, 11348 - 11319
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaacaa 331  Q
    ||||||||||||||||||||||||||||||    
T  11348 aaaactgaaaacaaaaactatttcaaacaa 11319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 37358 - 37413
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaa-ttttttaattttggggactaaaact 307  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  37358 taaaattacagttttggaaactgttttgaatttttttagttttggggactaaaact 37413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 13012 - 13066
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||  |||||||||||||||||||  |||||||||||||||||    
T  13012 taaaattacagttttcaaaactgttttgaatttttttgttttggggactaaaact 13066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 13116 - 13144
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaaca 330  Q
    |||||||||||||||||||||||||||||    
T  13116 aaaactgaaaacaaaaactatttcaaaca 13144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 22315 - 22261
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||||||||||  |||||||||||||||||||  |||||||||||||||||    
T  22315 taaaattacagttttcaaaactgttttgaatttttttgttttggggactaaaact 22261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 22211 - 22183
Alignment:
Q  302 aaaactgaaaacaaaaactatttcaaaca 330  Q
    |||||||||||||||||||||||||||||    
T  22211 aaaactgaaaacaaaaactatttcaaaca 22183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1248 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 1096 - 1047
Alignment:
Q  258 ttacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||||||    
T  1096 ttacagttttggaaactgttttgaattttttagttttgaggactaaaact 1047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 1217 - 1266
Alignment:
Q  258 ttacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||||||    
T  1217 ttacagttttggaaactgttttgaattttttagttttgaggactaaaact 1266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 68006 - 67971
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaatttttt 288  Q
    |||||||||||||||| |||||||||||||||||||    
T  68006 taaaattacagttttgaaaactgttttgaatttttt 67971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 1847 - 1793
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||| ||||||  |||| ||||||||||||| | |||||||||||||||||    
T  1847 taaaattatagtttttgaaacagttttgaatttttcagttttggggactaaaact 1793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 41029 - 40975
Alignment:
Q  253 taaaattacagttttgtaaactgttttgaattttttaattttggggactaaaact 307  Q
    |||||||| ||||||  |||| ||||||||||||| | |||||||||||||||||    
T  41029 taaaattatagtttttgaaacagttttgaatttttcagttttggggactaaaact 40975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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