View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5408-Insertion-4 (Length: 408)
Name: NF5408-Insertion-4
Description: NF5408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5408-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 125 - 398
Target Start/End: Complemental strand, 17726723 - 17726451
Alignment:
| Q |
125 |
cacacactcaccaaaaccttagtgattttcattaatcatattttctttgcttcttaaaaatgtcaaaaactatagttgatgagtgtcgtggtgttcttta |
224 |
Q |
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| T |
17726723 |
cacacactcaccaaaaccttagtgattttcattaatcatattttctttgcttctaaaaaatgtcaaaaactatagttgacgagtgtcgtggtgttcttca |
17726624 |
T |
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| Q |
225 |
tgtctataacgacggttccatagttcgtacgttaaacccagctttcaacatcacagttcaagacaacggcactgttttatggaaagatgtcgttttctcc |
324 |
Q |
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| T |
17726623 |
tgtctataacgacggttccatagttcgaaccttaaacccagctttcaacatcacagttcaagacagcggtactgttttatggaaagatgttgttttctcc |
17726524 |
T |
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| Q |
325 |
tcaacacacaatcttcaccttcgactctataggccagctaactcatcaccctccaaaaaagctaccaatctttt |
398 |
Q |
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| T |
17726523 |
tcaacacacaatcttcaccttcgactctataagccagctaactcatcaccctcca-aaaagctaccaatctttt |
17726451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 17726790 - 17726748
Alignment:
| Q |
66 |
tacattcattgattttctctttatattccaaactttaaattaa |
108 |
Q |
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| T |
17726790 |
tacattcattcattttctctttatattccaaactttaaattaa |
17726748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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