View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5408-Insertion-6 (Length: 354)

Name: NF5408-Insertion-6
Description: NF5408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5408-Insertion-6
NF5408-Insertion-6
[»] chr3 (4 HSPs)
chr3 (8-354)||(50814837-50815183)
chr3 (8-354)||(50860681-50861027)
chr3 (212-335)||(39559247-39559370)
chr3 (267-297)||(49857344-49857374)
[»] scaffold0543 (1 HSPs)
scaffold0543 (47-94)||(2457-2504)
[»] scaffold0492 (1 HSPs)
scaffold0492 (47-94)||(4003-4050)


Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 354
Target Start/End: Complemental strand, 50815183 - 50814837
Alignment:
Q  8 gtttcattagacagttccacttcaaagaggcgaatatgggcataaagttgaatataagctcaaggtgggttaagttgggaaacatgccgtgtaaataaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50815183 gtttcattagacagttccacttcaaagaggcgaatatgggcataaagttgaatataagctcaaggtgggttaagttgggaaacatgccgtgtaaataaac 50815084  T
Q  108 ggggacagtctgcatcatgagttacaaagacataaataaataatattggagcagaatgtaacaactaatttggtcatcatatacatgcatatatacatac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50815083 ggggacagtctgcatcatgagttacaaagacataaataaataatattggagcagaatgtaacaactaatttggtcatcatatacatgcatatatacatac 50814984  T
Q  208 atacctcttgtatgcggagaagattcacgttataaagccaatcaaactcaagtaaaccattggaaatgttagctctgaccaaattggataggtttagaac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50814983 atacctcttgtatgcggagaagattcacgttataaagccaatcaaactcaagtaaaccattggaaatgttagctctgaccaaattggataggtttagaac 50814884  T
Q  308 ctctctacctgtacgaatcaccatacaacgtctcgtaactattacat 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  50814883 ctctctacctgtacgaatcaccatacaacgtctcgtaactattacat 50814837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 354
Target Start/End: Original strand, 50860681 - 50861027
Alignment:
Q  8 gtttcattagacagttccacttcaaagaggcgaatatgggcataaagttgaatataagctcaaggtgggttaagttgggaaacatgccgtgtaaataaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50860681 gtttcattagacagttccacttcaaagaggcgaatatgggcataaagttgaatataagctcaaggtgggttaagttgggaaacatgccgtgtaaataaac 50860780  T
Q  108 ggggacagtctgcatcatgagttacaaagacataaataaataatattggagcagaatgtaacaactaatttggtcatcatatacatgcatatatacatac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50860781 ggggacagtctgcatcatgagttacaaagacataaataaataatattggagcagaatgtaacaactaatttggtcatcatatacatgcatatatacatac 50860880  T
Q  208 atacctcttgtatgcggagaagattcacgttataaagccaatcaaactcaagtaaaccattggaaatgttagctctgaccaaattggataggtttagaac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50860881 atacctcttgtatgcggagaagattcacgttataaagccaatcaaactcaagtaaaccattggaaatgttagctctgaccaaattggataggtttagaac 50860980  T
Q  308 ctctctacctgtacgaatcaccatacaacgtctcgtaactattacat 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  50860981 ctctctacctgtacgaatcaccatacaacgtctcgtaactattacat 50861027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 212 - 335
Target Start/End: Complemental strand, 39559370 - 39559247
Alignment:
Q  212 ctcttgtatgcggagaagattcacgttataaagccaatcaaactcaagtaaaccattggaaatgttagctctgaccaaattggataggtttagaacctct 311  Q
    |||| ||||||||||| |  ||||||||||||||||||||||||| |   |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39559370 ctctcgtatgcggagatggctcacgttataaagccaatcaaactcgatggaacctttggaaatgttagctctgaccaaattggataggtttagaacctct 39559271  T
Q  312 ctacctgtacgaatcaccatacaa 335  Q
    ||| |||||||||| ||| |||||    
T  39559270 ctagctgtacgaataaccttacaa 39559247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 297
Target Start/End: Original strand, 49857344 - 49857374
Alignment:
Q  267 ttggaaatgttagctctgaccaaattggata 297  Q
    |||||||||||||||||||||||||||||||    
T  49857344 ttggaaatgttagctctgaccaaattggata 49857374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 2457 - 2504
Alignment:
Q  47 gcataaagttgaatataagctcaaggtgggttaagttgggaaacatgc 94  Q
    ||||||||||||||||||||||||||||||| || ||| |||||||||    
T  2457 gcataaagttgaatataagctcaaggtgggtcaaattgtgaaacatgc 2504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 4003 - 4050
Alignment:
Q  47 gcataaagttgaatataagctcaaggtgggttaagttgggaaacatgc 94  Q
    ||||||||||||||||||||||||||||||| || ||| |||||||||    
T  4003 gcataaagttgaatataagctcaaggtgggtcaaattgtgaaacatgc 4050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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