View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5408-Insertion-7 (Length: 152)
Name: NF5408-Insertion-7
Description: NF5408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5408-Insertion-7 |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 9e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 9e-59
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 17932674 - 17932540
Alignment:
| Q |
8 |
agaccatggtcccttattagactctccaagttttggcctattacacttcaagattacactgctacacttaaacccacttccaattccaagtagccaaatg |
107 |
Q |
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| T |
17932674 |
agaccatggtcccttattagactctccaagttttggactattacacttcaaaaatacactgcaacacttaaacccacttccaattccaagtagccaaatg |
17932575 |
T |
|
| Q |
108 |
ttgtcacctttctgcactttttccttggctaccaa |
142 |
Q |
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| T |
17932574 |
ttgtcacctttctgcactttttccttggcttccaa |
17932540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 6e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 6e-54
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 32831969 - 32832103
Alignment:
| Q |
8 |
agaccatggtcccttattagactctccaagttttggcctattacacttcaagattacactgctacacttaaacccacttccaattccaagtagccaaatg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
32831969 |
agaccatggtcccttattagactctccaagttttggtctattacacttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatg |
32832068 |
T |
|
| Q |
108 |
ttgtcacctttctgcactttttccttggctaccaa |
142 |
Q |
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| T |
32832069 |
ttgtcacctttctgcactttttccttggcttccaa |
32832103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 6e-54
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 32845250 - 32845384
Alignment:
| Q |
8 |
agaccatggtcccttattagactctccaagttttggcctattacacttcaagattacactgctacacttaaacccacttccaattccaagtagccaaatg |
107 |
Q |
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| T |
32845250 |
agaccatggtcccttattagactctccaagttttggtctattacacttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatg |
32845349 |
T |
|
| Q |
108 |
ttgtcacctttctgcactttttccttggctaccaa |
142 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
32845350 |
ttgtcacctttctgcactttttccttggcttccaa |
32845384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 46189199 - 46189068
Alignment:
| Q |
11 |
ccatggtcccttattagactctccaagttttggcctattacacttcaagattacactgctacacttaaacccacttccaattccaagtagccaaatgttg |
110 |
Q |
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|||||||||||||| |||||| |||||| |||| |||||||||||||| | ||||||| |||||| ||||||||| ||||||| | |||||| || |
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| T |
46189199 |
ccatggtcccttatgagactcaccaagtattggtctattacacttcaaaacaacactgcaacacttggtcccacttcccattccaacttgccaaacatta |
46189100 |
T |
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| Q |
111 |
tcacctttctgcactttttccttggctaccaa |
142 |
Q |
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|||||||||| |||||||||||||||| |||| |
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| T |
46189099 |
tcacctttcttcactttttccttggcttccaa |
46189068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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