View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5408_high_2 (Length: 543)
Name: NF5408_high_2
Description: NF5408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5408_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 28139643 - 28139856
Alignment:
| Q |
18 |
aaaacatgactaacaaaataataatttttcccttnnnnnnnntaatagtaatttttaaataaaactctattcttcaaaataaactgatttatacaggttc |
117 |
Q |
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| T |
28139643 |
aaaacatgactaacaaaatattaatttttcccttaaaaaaaataatagtaatttttaaataaaactctattcttcaaaataaactgatttatacaagttc |
28139742 |
T |
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| Q |
118 |
ttattaagtgaaattaa--cagaatatactattcattgacttttatttta---------taaatgtattcattgacttttatgaagatgtcatgataatt |
206 |
Q |
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| T |
28139743 |
ttattaagtgaaattaattcagaatatactattcattgacttttattttatttattttttaaatgtattcattgacttttatgaagatgtcatgataatt |
28139842 |
T |
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| Q |
207 |
gatcaactcctttc |
220 |
Q |
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|||||||||||||| |
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| T |
28139843 |
gatcaactcctttc |
28139856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 464 - 525
Target Start/End: Original strand, 28139895 - 28139956
Alignment:
| Q |
464 |
aaaagagaacctgcaggagagagattgtagagaacatgagtaaacttgagggaactgtcact |
525 |
Q |
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| T |
28139895 |
aaaagagaacctgcaggagagagattgtagagaacatgagtaaacttgagggaactgtcact |
28139956 |
T |
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