View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5408_high_3 (Length: 408)
Name: NF5408_high_3
Description: NF5408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5408_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 7 - 393
Target Start/End: Original strand, 10484998 - 10485384
Alignment:
| Q |
7 |
gaagcaaaggatcccaagaggatatacaatatgattgatgtcttgcgagagggaagtatgagataaacatttctatatggaatttgatgcaagatgtcac |
106 |
Q |
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| T |
10484998 |
gaagcaaaggatcccaagagaatatacaatatgattgatgtcttgcgagagggaagtatgagataaacatttctatatggaatttgatgcaagatgtcac |
10485097 |
T |
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| Q |
107 |
ctgttgaagttgcttaacgaaatttggctttctaataaagcaattttcaccttctgtccatttttcgtgtctatttatttgaggaaagtttagtgacagg |
206 |
Q |
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| T |
10485098 |
ctgttgaagttgcttaacgaaatttggctttctaataaagcaattttcaccttctgtccatttttcgtgtctatttatttgaggaaagtttagtgacagg |
10485197 |
T |
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| Q |
207 |
accatactatgtgccattgtgagtcatccaaaactgagtgtttttgtatcaatttcagtttctcattacttttatgtatcaggcaacctcaaaaacaatt |
306 |
Q |
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| T |
10485198 |
accatactatgtgccattgtgagtcatccaaaactgagtgtttttgtatcaattttagtttcccattacttttatgtatcaggcaacctcaaaaacaatt |
10485297 |
T |
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| Q |
307 |
ttgattcatctatctttttcaattattcgccaaaaagagaattaaatcaccctagtcaacttaactaatctattgatgtgtttggat |
393 |
Q |
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| T |
10485298 |
ttgattcatctatctttttcaattattcaccaaaaagagaattaaatcaccctagtcaacttaactaatctattgatgtgtttggat |
10485384 |
T |
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