View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5408_low_11 (Length: 219)

Name: NF5408_low_11
Description: NF5408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5408_low_11
NF5408_low_11
[»] chr3 (2 HSPs)
chr3 (1-219)||(32845034-32845248)
chr3 (1-219)||(32831759-32831967)
[»] chr6 (1 HSPs)
chr6 (1-219)||(17932676-17932891)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 32845248 - 32845034
Alignment:
Q  1 attgcatccatcaatacccaatatcaactttcaattaataattttacacttgttattatatattgttcttggtgttcttaattattaatgnnnnnnnaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    ||||||       |||    
T  32845248 attgcatccatcaatacccaatatcaactttcaattaataattttacacttgttattatatattgttcttagtgttctta----ttaatgtttttttaga 32845153  T
Q  101 agtactaatgctgttcttgtgtttaagattgtgcaagaaaaatactattgnnnnnnnggggtttctatattttattattgtaaaagcatgttggtggatc 200  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||||||||||||||||||    
T  32845152 agtattaatgttgttcttgtgtttaagattgtgcaagaaaaatactattgaaaaaaaggggtttctatattttattattttaaaagcatgttggtggatc 32845053  T
Q  201 cagccctagatatcaatag 219  Q
    |||||||||||||||||||    
T  32845052 cagccctagatatcaatag 32845034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 32831967 - 32831759
Alignment:
Q  1 attgcatccatcaatacccaatatcaactttcaattaataattttacacttgttattatatattgttcttggtgttcttaattattaatgnnnnnnnaga 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    |||||||||       |||    
T  32831967 attgcatccatcaatacccaatatcaactttcaattgataattttacacttgttattatatattgttcttggtgttc----ttattaatgttattttaga 32831872  T
Q  101 agtactaatgctgttcttgtgtttaagattgtgcaagaaaaatactattgnnnnnnnggggtttctatattttattattgtaaaagcatgttggtggatc 200  Q
    |||| ||||| |||||||||||||||||||||  |||||||||||||| |        |||||||    || |||||| ||||| |||||||||||||||    
T  32831871 agtattaatgttgttcttgtgtttaagattgtataagaaaaatactatagaaaaaa--gggtttc----ttgtattatcgtaaatgcatgttggtggatc 32831778  T
Q  201 cagccctagatatcaatag 219  Q
    | | |||||||||||||||    
T  32831777 cgggcctagatatcaatag 32831759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 17932676 - 17932891
Alignment:
Q  1 attgcatccatcaatacccaatatcaactttcaattaataattttacacttgttattatatattgttcttggtgttcttaattattaatgnnnnnnn-ag 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||        ||    
T  17932676 attgcatccatcaatacccaatatcaactttcaattaataattttacacttgttattatatattgttcttggtgttcttt----ttaatgttttttttag 17932771  T
Q  100 aagtactaatgctgttcttgtgtttaagattgtgcaagaaaaatactattgnnnnnnnggggtttctatattttattattgtaaaagcatgttggtggat 199  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| |||||    
T  17932772 aagtattaatgatgttcttgtgtttaaggttgtgcaagaaaaatactattgaaaaaaaggggtttctatattttattattgtaaaagcatgttgatggat 17932871  T
Q  200 ccagccctagatatcaatag 219  Q
    ||||||| ||||||||||||    
T  17932872 ccagcccaagatatcaatag 17932891  T

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