View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5408_low_5 (Length: 347)
Name: NF5408_low_5
Description: NF5408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5408_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 329
Target Start/End: Complemental strand, 17232309 - 17231992
Alignment:
| Q |
12 |
cgaagaatatgtaacatgaacattcaatcaggaggatataaaaaatgaattgattaataaaaaattacgatagcttactgttcccatgtctgttctatga |
111 |
Q |
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| T |
17232309 |
cgaaaaatatgtaacatgaacattcaatcaggaggatataaaaaatgaattgattaataaaaaattacgatagcttactgttcccatgtctgttctatga |
17232210 |
T |
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| Q |
112 |
gtaaggtacgtattgtacttccttcgagataatccgaaatcacgtacctattcaaaagtataaaaagtcataccacatacacgaacacgtcaaatagtat |
211 |
Q |
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| T |
17232209 |
gtaaggtacgtattgtacttccttcgagataatccgaaatcacgtacctattcaaaagtataaaaagtcataccacatacatgaacacgtcaaatagtat |
17232110 |
T |
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| Q |
212 |
aaccaccatgtgctatcaaggaacattaatgaatcataaagattaaattcaatgagcacctttagattaaaacctttgtcaacaaggaggttttcggacg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||| |
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| T |
17232109 |
aaccaccatgtgctatcaaggaacattaatgaatcataaagattaaattcaatgagcacctttagataaaaacttttgtcaaccaggaggtttttggacg |
17232010 |
T |
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| Q |
312 |
tcaaaatccctatgaact |
329 |
Q |
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| T |
17232009 |
tcaaaatccctatgaact |
17231992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 160 - 327
Target Start/End: Complemental strand, 1251061 - 1250904
Alignment:
| Q |
160 |
tattcaaaagtataaaaagtcataccacatacacgaacacgtcaaatagtataaccaccatgtgctatcaaggaacattaatgaatcataaagattaaat |
259 |
Q |
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| T |
1251061 |
tattcataagtaaaaaaagtcataccacatacatgaacaattcaaatagtataaccaccatgt--------ggaacattaattaatcataaagattaaat |
1250970 |
T |
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| Q |
260 |
tcaatgagcacctttagattaaaacctttgtcaacaaggaggttttcggacgtcaaaatccctatgaa |
327 |
Q |
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| T |
1250969 |
tcaatgagcaattttacattaacgtttctatcaacaaggaggtttttggacgtc--aatccctatgaa |
1250904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 121 - 275
Target Start/End: Original strand, 38946403 - 38946556
Alignment:
| Q |
121 |
gtattgtacttccttcgagataatccgaaatcacgtacctattcaaaagtataaaaagtcataccacatacacgaacacgtcaaatagtataaccaccat |
220 |
Q |
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| T |
38946403 |
gtattatacttcatttgagataagttgaaatcgcatacctattcaaaagtaaaaaaagtcataccatatacatgaacagttcaaatagtataatcatcat |
38946502 |
T |
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| Q |
221 |
gtgctatcaaggaacattaatgaatcataaagattaaattcaatgagcaccttta |
275 |
Q |
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| T |
38946503 |
gaactatcgcagagcaataattaatca-caagattaaattcaatgaacaccttta |
38946556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 38947892 - 38947955
Alignment:
| Q |
183 |
accacatacacgaacacgtcaaatagtataaccaccatgtgctatcaaggaacattaatgaatc |
246 |
Q |
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|||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
38947892 |
accacatacatgaacttgtcaaatagtataatcaccatgtgctatcaaggaacattaattaatc |
38947955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 38946301 - 38946343
Alignment:
| Q |
24 |
aacatgaacattcaatcaggaggatataaaaaatgaattgatt |
66 |
Q |
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| T |
38946301 |
aacatgaacattcaataaggatgatataaagaatgaattgatt |
38946343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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