View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5408_low_7 (Length: 291)
Name: NF5408_low_7
Description: NF5408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5408_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 5 - 273
Target Start/End: Original strand, 23597553 - 23597821
Alignment:
| Q |
5 |
gaggagcacagaaagaaggtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgt |
104 |
Q |
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| T |
23597553 |
gaggagcacaaaaggaaggtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgt |
23597652 |
T |
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| Q |
105 |
cggctgatgataagaagaaaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagat |
204 |
Q |
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| T |
23597653 |
cggctgatgataagaagaaaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagat |
23597752 |
T |
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| Q |
205 |
gaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtgttggtggtgatgctgg |
273 |
Q |
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| T |
23597753 |
gaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtgctggtggtgatgctgg |
23597821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 5 - 273
Target Start/End: Original strand, 23588701 - 23588969
Alignment:
| Q |
5 |
gaggagcacagaaagaaggtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgt |
104 |
Q |
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| T |
23588701 |
gaggagcacaaaaagaaagtggaggccaagaatgcacttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgt |
23588800 |
T |
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| Q |
105 |
cggctgatgataagaagaaaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagat |
204 |
Q |
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| T |
23588801 |
ctgctgatgataagaagaaaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagat |
23588900 |
T |
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| Q |
205 |
gaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtgttggtggtgatgctgg |
273 |
Q |
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| T |
23588901 |
gaaggagctggagggcatttgcaaccctatcattgcaaggatgtatcaaggtgctggtggagatgctgg |
23588969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 257
Target Start/End: Original strand, 8018381 - 8018633
Alignment:
| Q |
5 |
gaggagcacagaaagaaggtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgt |
104 |
Q |
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| T |
8018381 |
gaggaacacaaaaagaaggttgatgcaaagaatgctttggaaaactacgcttacaacatgaggaacacaattaaagacgagaagattggttcaaagcttt |
8018480 |
T |
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| Q |
105 |
cggctgatgataagaagaaaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagat |
204 |
Q |
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| T |
8018481 |
cacctgaggacaaaaagaagattgatgatgcaattgacgctgcaattcagtggttggacagtaaccagttggcagaggctgatgagtttgaagataagat |
8018580 |
T |
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| Q |
205 |
gaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
257 |
Q |
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| T |
8018581 |
gaaggaacttgagagcctttgcaacccaatcattgccaagatgtatcaaggtg |
8018633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 39984678 - 39984594
Alignment:
| Q |
173 |
cttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
257 |
Q |
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| T |
39984678 |
cttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
39984594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 257
Target Start/End: Complemental strand, 8101828 - 8101615
Alignment:
| Q |
44 |
gagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaagaaaattgaagatgctattgagg |
143 |
Q |
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| T |
8101828 |
gagaactatgcatacaacatgagaaacaccattaaagacgagaagatcagttcaaagctttcaggaggagacaagaagcagattgaggatgcaattgagg |
8101729 |
T |
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| Q |
144 |
gggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaag |
243 |
Q |
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| T |
8101728 |
gagccattcaatggcttgatgcaaaccagcttgctgaagccgatgagtttgaagacaagatgaaggagcttgagacaatctgtaacccaatcattgcaaa |
8101629 |
T |
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| Q |
244 |
gatgtatcaaggtg |
257 |
Q |
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| T |
8101628 |
gatgtaccaaggtg |
8101615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 17706803 - 17706893
Alignment:
| Q |
167 |
aatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
257 |
Q |
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| T |
17706803 |
aatcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
17706893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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