View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5408_low_8 (Length: 284)
Name: NF5408_low_8
Description: NF5408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5408_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 28139556 - 28139294
Alignment:
| Q |
10 |
caatgtatgtcgacactttaaaaagtagaagttcacaatcatacttatcattatacaagtgagatagtgactagatatttgacaaaatcaaaagaaaatg |
109 |
Q |
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| T |
28139556 |
caatgtatgtcgacactttaaaaagtagaagttcacaatcatacttatctttatacaagtgagatagtgacttgatatttgacaaaatcaaaagaaaatg |
28139457 |
T |
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| Q |
110 |
agagtttgttgagttgagtcactcannnnnnnnncaaaaattgacaacaattatgttaccacgtcactcgttagaatgatgctgatcgtgaacttcttct |
209 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28139456 |
agagtttgttgagttgagtcactcattttttttttaaaaattgacaacaattatgttaccacgtcactcgttagaatgatgctgatcatgaacttcttct |
28139357 |
T |
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| Q |
210 |
tccaaaatataccttgagtacattttaagtgttagtctatggcggacacctatcaaaatgatg |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28139356 |
tccaaaatataccttgagtacattttaagtgttagtctatggtggacacctatcaaaatgatg |
28139294 |
T |
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