View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5408_low_9 (Length: 251)
Name: NF5408_low_9
Description: NF5408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5408_low_9 |
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| [»] scaffold1880 (1 HSPs) |
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| [»] scaffold1462 (1 HSPs) |
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Alignment Details
Target: scaffold1880 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold1880
Description:
Target: scaffold1880; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 530 - 322
Alignment:
| Q |
25 |
ccagtcaatcctgtcttctatatctacgtttcagacactaacaacacttaagcttgccgcttatacaaacccttgggtttatcaaaaaccattctttcca |
124 |
Q |
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| T |
530 |
ccagtcaatcctgtcttctatatctacgtttcagacactaacaacacttaagcttgccgtttatacaaacccttggatttatcacaaagcattctttcca |
431 |
T |
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| Q |
125 |
gactctctgaaacttccgacattggttaatttggaactaacagatttcatctttagagatagtgaaaatgtcggttatcttgagcctttttcgttcttta |
224 |
Q |
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| T |
430 |
gactatctgaaatttccgacattggttaatttggaactaactaatttcatctttagagatagtgaaaatgtcggttatgttgagcctttttcgttcttta |
331 |
T |
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| Q |
225 |
ataagttga |
233 |
Q |
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||||||||| |
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| T |
330 |
ataagttga |
322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1462 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold1462
Description:
Target: scaffold1462; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 1230 - 1427
Alignment:
| Q |
25 |
ccagtcaatcctgtcttctatatctacgtttcagacactaacaacacttaagcttgccgcttatacaaacccttgggtttatcaaaaaccattctttcca |
124 |
Q |
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||||||||||||||| ||||| ||| |||||||||||||||| ||||||||||| | | | | | ||||| |||||||||||||| |||| ||||| |
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| T |
1230 |
ccagtcaatcctgtcatctatgtcttcgtttcagacactaacgtcacttaagcttcatgttaaaatacaccctagggtttatcaaaaagcattttttcct |
1329 |
T |
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| Q |
125 |
gactctctgaaacttccgacattggttaatttggaactaacagatttcatctttagagatagtgaaaatgtcggttatcttgagcctttttcgttctt |
222 |
Q |
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| T |
1330 |
gactatctgaaatttccagcattggttaatttggaactaactaatttgatgtttagagatagtgaaaatgtcggtgatgttgagcctttttcggtctt |
1427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 18316119 - 18316327
Alignment:
| Q |
25 |
ccagtcaatcctgtcttctatatctacgtttcagacactaacaacacttaagcttgccgcttatacaaacccttgggtttatcaaaaaccattctttcca |
124 |
Q |
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|||||||||||||||||| || || ||||||| |||||||| ||||||||||||| | | ||| | |||||||| || || ||| |||| ||||| |
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| T |
18316119 |
ccagtcaatcctgtcttcaatgccttcgtttcaaacactaacgtcacttaagcttgctgttaatatacgcccttgggattctctcaaagcattttttcct |
18316218 |
T |
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| Q |
125 |
gactctctgaaacttccgacattggttaatttggaactaacagatttcatctttagagatagtgaaaatgtcggttatcttgagcctttttcgttcttta |
224 |
Q |
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|||| ||||||| |||| |||||||||||||||||||||| |||| || ||||||||||| ||||||||||||||| |||||||||||||| |||| | |
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| T |
18316219 |
gactatctgaaatttccttcattggttaatttggaactaactaatttgatgtttagagatagggaaaatgtcggttatgttgagcctttttcggtcttca |
18316318 |
T |
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| Q |
225 |
ataagttga |
233 |
Q |
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| T |
18316319 |
aaaagttga |
18316327 |
T |
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