View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5409-Insertion-1 (Length: 1083)

Name: NF5409-Insertion-1
Description: NF5409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5409-Insertion-1
NF5409-Insertion-1
[»] chr7 (4 HSPs)
chr7 (7-1059)||(36025163-36026235)
chr7 (36-125)||(15710210-15710299)
chr7 (36-125)||(4717845-4717934)
chr7 (69-125)||(15687046-15687102)
[»] chr5 (6 HSPs)
chr5 (36-125)||(18530194-18530283)
chr5 (36-125)||(18533514-18533603)
chr5 (36-125)||(22052958-22053047)
chr5 (36-125)||(12030506-12030595)
chr5 (36-125)||(22056480-22056567)
chr5 (63-103)||(22425857-22425897)
[»] chr4 (7 HSPs)
chr4 (36-125)||(10103374-10103463)
chr4 (7-125)||(31133285-31133403)
chr4 (36-125)||(15677591-15677680)
chr4 (36-125)||(15679467-15679556)
chr4 (36-125)||(33241756-33241845)
chr4 (37-125)||(15674210-15674298)
chr4 (426-474)||(5251894-5251942)
[»] scaffold0025 (3 HSPs)
scaffold0025 (36-125)||(6598-6687)
scaffold0025 (36-125)||(7173-7262)
scaffold0025 (7-77)||(9908-9978)
[»] chr2 (5 HSPs)
chr2 (36-125)||(24340512-24340601)
chr2 (36-125)||(24344031-24344120)
chr2 (36-122)||(41617605-41617691)
chr2 (36-122)||(2621433-2621519)
chr2 (420-474)||(26009784-26009838)
[»] chr1 (2 HSPs)
chr1 (399-471)||(16934346-16934418)
chr1 (171-251)||(16934547-16934627)
[»] chr3 (3 HSPs)
chr3 (422-473)||(28409470-28409521)
chr3 (89-125)||(25607945-25607981)
chr3 (421-474)||(28590403-28590456)


Alignment Details
Target: chr7 (Bit Score: 882; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 882; E-Value: 0
Query Start/End: Original strand, 7 - 1059
Target Start/End: Original strand, 36025163 - 36026235
Alignment:
Q  7 atttcgttcatataaaaacttgnnnnnnnatagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccg 106  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36025163 atttcgttcatataaaaacttgtttttt-atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccg 36025261  T
Q  107 aaatcaaaatataatcattgctttgttacaaaata----------gcttaaattagaataagtcaattgctttgttacaaaatgttaaggatatttcatt 196  Q
    ||||||||||||||||||||||||||||||||||           |||||||| ||||||||||||||||||||||||||  ||||||||||||||||||    
T  36025262 aaatcaaaatataatcattgctttgttacaaaatgttacaaaatggcttaaatcagaataagtcaattgctttgttacaa--tgttaaggatatttcatt 36025359  T
Q  197 gctttgttacccttaagaaagtgaaggtgacggttttcataatagaaaaaataatgaaatgtcttaaacattttacaagctataattcttaatacactat 296  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36025360 gctttgttacccttaagaaagtgaaggtgacagttttcataatagaaaaaataatgaaatgtcttaaacattttacaagctataattcttaatacactat 36025459  T
Q  297 actcaaattttaaaaagaaggggagaattagttgtgtgtcattatgaaaaccttgaaatattgaaccaaacgatgtcatagatactcaaataaaagataa 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36025460 actcaaattttaaaaagaaggggagaattagttgtgtgtcattatgaaaaccttgaaatattgaaccaaacgatgtcatagatactcaaataaaagataa 36025559  T
Q  397 aagggaaataattacatgtgtgtggggggttgggtaactcaagtggcttgagccaagggaaaatgagttggaggtccttgttcaatcccgtgtgttattt 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36025560 aagggaaataattacatgtgtgtggggggttgggtaactcaagtggcttgagccaagggaaaatgagttggaggtccttgttcaatcccgtgtgttattt 36025659  T
Q  497 taaaaaccatcgcctttggcgcgaaaatccgttatggaaagaattcgactgaatctagttcgagtcgaccccaaacttgagtcggtaacggagtcaagcc 596  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36025660 taaaaaccatcgcctttggcgcgaaaatccgttatggaaagaattcgactgaatctagttcgagtcgaccccgaacttgagtcggtaacggagtcaagcc 36025759  T
Q  597 tttgtggctgtgcgtgagtaaaggagtaacaactatattgaagatgatgatattaatatagattgaaatagaagaagacattgctgtctctggaacagat 696  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36025760 tttgtggctgtgcgtgagtaaaggagtaacaactatattgaagatgataatattaatatagattgaaatagaagaagacattgctgtctctggaacagat 36025859  T
Q  697 agctaattgcactatgttgtctagctggtgtttatttatgcttttcttagaacactttcttatttgtaatagttttgtgtcaaatgagtttatttataat 796  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36025860 agctaattgcactatgttgtctagctggtgtttatttatgcttttcttagaacactttcttatttgtaatagttttgtgtcaaatgagtttatttataat 36025959  T
Q  797 ctacgagccttacacaataatttaacatgataaatacaacctcaacctaaaatctgtcctctcaagtttgatatgtttggaggtatttgtagtattccga 896  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36025960 ctacgagccttacacaataatttaacatgataaatacaacctcaacctaaaatctgtcctctcaagtttgatatgtttggaggtatttgtagtattccga 36026059  T
Q  897 ttcagaagaaattattatcg-atagattgagttggatctcttgt-ggttcttgctttacgaaatccgacac-atatttttccccgg-tctc-tattcttt 991  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||| ||||||||    
T  36026060 ttcagaagaaattattatcgaatagattgagttggatctcttgtgggttcttgctttacgaaatccgacacaatatttttccccggttctcttattcttt 36026159  T
Q  992 --ataattctcttcattc-actatggt-ttactgtcag-tgatattta--taga-gacgttctagtactatcaaaa 1059  Q
       ||||||||||||||| |||||||| |||||||||| |||||||||   ||| |||||||||||||||||||||    
T  36026160 tattaattctcttcattcaactatggtcttactgtcagttgatatttaataagaggacgttctagtactatcaaaa 36026235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 15710210 - 15710299
Alignment:
Q  36 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15710210 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 15710299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 4717845 - 4717934
Alignment:
Q  36 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 125  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  4717845 atagaagtagctcttgagataagactctggaggagctagatccttgaggtaatactctagagggatcacccaaatcaaaatataatcatt 4717934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 15687102 - 15687046
Alignment:
Q  69 agctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 125  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  15687102 agctagatccttgaggtaatactctggagggatcacgggaatcaaaatataatcatt 15687046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 6e-43; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 18530283 - 18530194
Alignment:
Q  36 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18530283 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 18530194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 18533514 - 18533603
Alignment:
Q  36 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18533514 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 18533603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 22053047 - 22052958
Alignment:
Q  36 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22053047 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 22052958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 12030506 - 12030595
Alignment:
Q  36 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 125  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12030506 atagaaatagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 12030595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 22056480 - 22056567
Alignment:
Q  36 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||| ||||| ||||||||||||||||||||    
T  22056480 atagaagtagatcttgagacaagactctggaggagctagatccttgagg--atactctagaggtatcacagaaatcaaaatataatcatt 22056567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 22425897 - 22425857
Alignment:
Q  63 tggaggagctagatccttgaggtaatactctggagggatca 103  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  22425897 tggaggagctaggtccttgaggtaatactctggagggatca 22425857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 6e-43; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 10103463 - 10103374
Alignment:
Q  36 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10103463 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 10103374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 31133285 - 31133403
Alignment:
Q  7 atttcgttcatataaaaacttgnnnnnnnatagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccg 106  Q
    ||||||||| ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31133285 atttcgttcctataaaaacttgtttttttatagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccg 31133384  T
Q  107 aaatcaaaatataatcatt 125  Q
    ||||||||  |||||||||    
T  31133385 aaatcaaataataatcatt 31133403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 15677591 - 15677680
Alignment:
Q  36 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 125  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15677591 atagaagtagatcttgagacaagactctggaggaactagatccttgaggtaatactctggagggatcacggaaatcaaaatataatcatt 15677680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 15679556 - 15679467
Alignment:
Q  36 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 125  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15679556 atagaagtagctcttgagacaagactctggaggagctagatccttaaggtaatactctggagggatcaccgaaatcaaaatataatcatt 15679467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 33241756 - 33241845
Alignment:
Q  36 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 125  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33241756 atagaagtagatcttgagacaagactctagaggagctagatccttaaggtaatactctggagggatcaccgaaatcaaaatataatcatt 33241845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 15674298 - 15674210
Alignment:
Q  37 tagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 125  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15674298 tagaagtagctcttgagacaagactctggaggagctagatccttaaggtaatactctggagggatcaccgaaatcaaaatataatcatt 15674210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 426 - 474
Target Start/End: Complemental strand, 5251942 - 5251894
Alignment:
Q  426 ttgggtaactcaagtggcttgagccaagggaaaatgagttggaggtcct 474  Q
    ||||||| ||||| ||| |||||||||||||||| ||||||||||||||    
T  5251942 ttgggtagctcaactggtttgagccaagggaaaaggagttggaggtcct 5251894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 6687 - 6598
Alignment:
Q  36 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6687 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcacggaaatcaaaatataatcatt 6598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 7262 - 7173
Alignment:
Q  36 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7262 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcacggaaatcaaaatataatcatt 7173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 9908 - 9978
Alignment:
Q  7 atttcgttcatataaaaacttgnnnnnnnatagaagtagatcttgagacaagactctggaggagctagatc 77  Q
    ||||||||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  9908 atttcgttcctataaaaacttgtttttttatagaagtagatcttgagacaagactctggaggagctagatc 9978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 24340601 - 24340512
Alignment:
Q  36 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 125  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24340601 atagaagtagatcttgagacaagactctgaaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 24340512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 24344031 - 24344120
Alignment:
Q  36 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatcatt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  24344031 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggacggatcacagaaatcaaaatataatcatt 24344120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 41617605 - 41617691
Alignment:
Q  36 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatc 122  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41617605 atagaagtagctcttgagataagactctggaggagctagatccttgaggtaatactctggagggatcacccaaatcaaaatataatc 41617691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 2621433 - 2621519
Alignment:
Q  36 atagaagtagatcttgagacaagactctggaggagctagatccttgaggtaatactctggagggatcaccgaaatcaaaatataatc 122  Q
    |||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2621433 atagaaatagctcttgagataagactctggaggagctagatccttgaggtaatactctggagggatcacccaaatcaaaatataatc 2621519  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 420 - 474
Target Start/End: Original strand, 26009784 - 26009838
Alignment:
Q  420 ggggggttgggtaactcaagtggcttgagccaagggaaaatgagttggaggtcct 474  Q
    ||||||||||||| ||||| ||| ||||||||||||| || ||||||||||||||    
T  26009784 ggggggttgggtagctcaactggtttgagccaagggataaagagttggaggtcct 26009838  T

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Target: chr1 (Bit Score: 57; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 399 - 471
Target Start/End: Complemental strand, 16934418 - 16934346
Alignment:
Q  399 gggaaataattacatgtgtgtggggggttgggtaactcaagtggcttgagccaagggaaaatgagttggaggt 471  Q
    |||||||| |||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  16934418 gggaaatatttacatgtatgtggggggttgggtaactcaagttgtttgagccaagggaaaatgagttggaggt 16934346  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 16934627 - 16934547
Alignment:
Q  171 ttacaaaatgttaaggatatttcattgctttgttacccttaagaaagtgaaggtgacggttttcataatagaaaaaataat 251  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||| |||| ||| |||| |||||||||||||| ||||    
T  16934627 ttacaaaatgttaaggacatttcattactttgttacccttaagaaagagaagttgatggttgtcataatagaaaaagtaat 16934547  T

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Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 422 - 473
Target Start/End: Complemental strand, 28409521 - 28409470
Alignment:
Q  422 ggggttgggtaactcaagtggcttgagccaagggaaaatgagttggaggtcc 473  Q
    ||||||||||||||||| ||| |||||| ||||||| |||||||||||||||    
T  28409521 ggggttgggtaactcaactgggttgagctaagggaagatgagttggaggtcc 28409470  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 25607945 - 25607981
Alignment:
Q  89 actctggagggatcaccgaaatcaaaatataatcatt 125  Q
    ||||||||||| |||||||||||||||||||||||||    
T  25607945 actctggaggggtcaccgaaatcaaaatataatcatt 25607981  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 421 - 474
Target Start/End: Complemental strand, 28590456 - 28590403
Alignment:
Q  421 gggggttgggtaactcaagtggcttgagccaagggaaaatgagttggaggtcct 474  Q
    |||||||||||||||||| ||| |||||| |||||| || | ||||||||||||    
T  28590456 gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcct 28590403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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