View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5409-Insertion-4 (Length: 960)
Name: NF5409-Insertion-4
Description: NF5409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5409-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 314 - 947
Target Start/End: Original strand, 7077417 - 7078042
Alignment:
| Q |
314 |
atatataaaccttacatatgtgatacaacccttacctactgatgtaaaggcataactaaaattaattgttagtaaatatagcggaaacccaaaccttcag |
413 |
Q |
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| T |
7077417 |
atatataaaccttacatatgtgatacaacccttacctactgatgtaaaggcataactaaaattaattgttagtaaatatagcggaaacccaaaccttcag |
7077516 |
T |
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| Q |
414 |
atgttaagcaaccaaaaccttacagttttgctttaaaattaagcttcgtggctctcct--acatcaccaaaccatagtctcgtctagtttccctcgttat |
511 |
Q |
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| T |
7077517 |
atgttaagcaaccaaaaccttgcagttttgctttaaaattaagcttcgtggctctcctctacatcaccaaaccttagtctcgtctagtttccctcgttat |
7077616 |
T |
|
| Q |
512 |
tggttgaaaaggtttaaacccatttaataatttgaatatccttaaattagtgagtagtagggnnnnnnnnctattgtttaatgtatatctttctataagc |
611 |
Q |
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| T |
7077617 |
tggttgaaaaggtttaaactcatttaataatttgaatatactttaatgagtgaatagtagggaaaaaaa-ctattgtttaat--atatctttctataagc |
7077713 |
T |
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| Q |
612 |
aaatttttgtttatatagagtacaagaggtttcacaatcgagtacaataaaatttggggacaatggtctcataaatgaagttcagatcacaaaaagacta |
711 |
Q |
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| T |
7077714 |
aaatttttgtttatatagagtacaagaggtttcacaatcgggtacaataaaatttggagacaatggtctcataaatgaagtt---atcacaaaaagacta |
7077810 |
T |
|
| Q |
712 |
tgtgttggatgcgacctcatgaaatcaaactaataatattcatctacaatgttttaaacaacggtctggtactcaacccacaaaaacaaacaccctaaat |
811 |
Q |
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| T |
7077811 |
tgtgttggatgcgacctcatgaaatcaaactagtaatattcatctacaatgttttaaacaacggtctggta----acccacaaaaacaaacaccctaaat |
7077906 |
T |
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| Q |
812 |
caagaattatgatgaagaagagggtttggaaaccatttaaaaaatatacaagacactcttttttctaacgagaattcacatccaagaggttaatttaatt |
911 |
Q |
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| T |
7077907 |
caaaaattatgatgaagaagagggtttggaaaccatttaaaaaatatacaagacactcttttttctaacgagaattcacatccaagaggttaatttga-t |
7078005 |
T |
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| Q |
912 |
tgcatttac-atatctttcatattcatcatcaattca |
947 |
Q |
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| T |
7078006 |
tgcatttacaatatctttcatattcatcatcaattca |
7078042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 319
Target Start/End: Original strand, 7076913 - 7077226
Alignment:
| Q |
6 |
cagataggggtagagtggaggatgcttagattaatgtgatgcttatatgtctcatatttcaacgatctttattgtattgcttaaattataaaatgagaaa |
105 |
Q |
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| T |
7076913 |
cagataggggtagagtggaggatgcttagattaatgtgatgcttataggtctcatatttcaacgatctttattgtattgcttaaattataaaataagaaa |
7077012 |
T |
|
| Q |
106 |
tattatttatacattattttaagataattttgagacaactttctcttcctttctttttatattgtttctgtccaatnnnnnnnnnnnnnnnnnngttgtt |
205 |
Q |
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| T |
7077013 |
tattatttatacattattatgagatgattttgagacaactttctcttcctttctttctatattgtttctgtccaataaaaataaaaaataaaaagttgtt |
7077112 |
T |
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| Q |
206 |
ctacaagttgtaattaaaatggttgtacaaacatttttctagaataaaatttcaacatacaccattatatcttaacattggtttttatttgctaaaacta |
305 |
Q |
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| T |
7077113 |
ctacaagttgtaattaaaatggttgtaggaacatttttctagtataaaatttcaacatacaccattatatcttaacattggtttttatttgctaaaacta |
7077212 |
T |
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| Q |
306 |
tctatctaatatat |
319 |
Q |
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| T |
7077213 |
tctatctaatatat |
7077226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 775 - 910
Target Start/End: Original strand, 7078050 - 7078184
Alignment:
| Q |
775 |
gtctggtactcaacccacaaaaacaaacaccctaaatcaagaattatgatgaagaagagggtttggaaaccatttaaaaaatatacaagacactcttttt |
874 |
Q |
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|||||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||||||||| || ||||| |
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| T |
7078050 |
gtctggtattcgacccaccaaaacaaacaccctaaatcaagaattatgatgaagaaaagggtttggaagccattaaaaatatatacaagaccct-ttttt |
7078148 |
T |
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| Q |
875 |
tctaacgagaattcacatccaagaggttaatttaat |
910 |
Q |
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| T |
7078149 |
tctaatgagaaattaaatccaagaggttgatttaat |
7078184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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