View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5409_high_1 (Length: 475)

Name: NF5409_high_1
Description: NF5409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5409_high_1
NF5409_high_1
[»] chr3 (58 HSPs)
chr3 (18-475)||(2441742-2442199)
chr3 (314-371)||(2644357-2644414)
chr3 (314-371)||(2659147-2659204)
chr3 (315-371)||(2696727-2696783)
chr3 (315-371)||(4142129-4142185)
chr3 (315-371)||(4157939-4157995)
chr3 (315-381)||(3754600-3754666)
chr3 (314-364)||(13498223-13498273)
chr3 (314-395)||(7942484-7942565)
chr3 (314-366)||(754609-754661)
chr3 (314-366)||(2456248-2456300)
chr3 (314-366)||(7324431-7324483)
chr3 (95-215)||(12132889-12133009)
chr3 (315-378)||(989396-989459)
chr3 (315-366)||(1891064-1891115)
chr3 (315-370)||(7432050-7432105)
chr3 (315-381)||(1940564-1940630)
chr3 (317-367)||(2459277-2459327)
chr3 (316-366)||(2492083-2492133)
chr3 (316-366)||(2631358-2631408)
chr3 (314-364)||(9561987-9562037)
chr3 (312-378)||(12133094-12133160)
chr3 (18-215)||(13479311-13479508)
chr3 (314-371)||(2476633-2476690)
chr3 (314-371)||(2502147-2502204)
chr3 (314-371)||(7334234-7334291)
chr3 (315-364)||(9608346-9608395)
chr3 (316-368)||(768327-768379)
chr3 (314-366)||(771499-771551)
chr3 (315-371)||(803213-803269)
chr3 (314-366)||(7430536-7430588)
chr3 (96-216)||(7432177-7432297)
chr3 (314-366)||(9565829-9565881)
chr3 (314-366)||(37753345-37753397)
chr3 (314-366)||(43991959-43992011)
chr3 (315-378)||(968671-968734)
chr3 (315-378)||(1931142-1931205)
chr3 (315-369)||(956381-956435)
chr3 (316-366)||(7442977-7443027)
chr3 (315-376)||(1007461-1007522)
chr3 (315-371)||(1022489-1022545)
chr3 (314-366)||(1437995-1438046)
chr3 (318-366)||(9587185-9587233)
chr3 (316-368)||(9594622-9594674)
chr3 (327-366)||(746383-746422)
chr3 (324-371)||(2686307-2686354)
chr3 (315-377)||(1936969-1937031)
chr3 (317-367)||(7398178-7398228)
chr3 (317-367)||(23197014-23197064)
chr3 (317-362)||(997578-997623)
chr3 (317-362)||(1013968-1014013)
chr3 (159-200)||(2678541-2678582)
chr3 (151-200)||(3754460-3754509)
chr3 (151-200)||(4142279-4142328)
chr3 (314-366)||(783799-783851)
chr3 (315-371)||(792899-792955)
chr3 (315-371)||(2678394-2678450)
chr3 (319-367)||(3746012-3746060)
[»] chr7 (4 HSPs)
chr7 (31-390)||(1078136-1078489)
chr7 (319-368)||(3927063-3927112)
chr7 (161-216)||(24723212-24723267)
chr7 (315-365)||(1421170-1421220)
[»] chr2 (12 HSPs)
chr2 (315-368)||(7160752-7160805)
chr2 (325-369)||(6538844-6538888)
chr2 (315-368)||(7156190-7156243)
chr2 (315-367)||(36577366-36577418)
chr2 (318-368)||(7168688-7168738)
chr2 (315-368)||(7174371-7174424)
chr2 (315-368)||(11237693-11237746)
chr2 (315-366)||(33038160-33038211)
chr2 (316-366)||(33020314-33020364)
chr2 (315-368)||(7199976-7200029)
chr2 (314-366)||(33026656-33026708)
chr2 (314-366)||(34560917-34560969)
[»] chr5 (16 HSPs)
chr5 (315-367)||(11081813-11081865)
chr5 (315-371)||(23766857-23766913)
chr5 (315-371)||(23816705-23816761)
chr5 (315-371)||(23769641-23769697)
chr5 (315-371)||(23819489-23819545)
chr5 (314-364)||(20292994-20293044)
chr5 (308-344)||(2067074-2067110)
chr5 (157-211)||(1427824-1427878)
chr5 (314-364)||(20301442-20301492)
chr5 (314-364)||(20305855-20305905)
chr5 (314-364)||(20310259-20310309)
chr5 (412-457)||(11081910-11081955)
chr5 (315-371)||(23732167-23732223)
chr5 (315-370)||(1427689-1427744)
chr5 (147-200)||(2067212-2067265)
chr5 (315-371)||(23861021-23861077)
[»] chr6 (14 HSPs)
chr6 (326-374)||(176345-176393)
chr6 (318-378)||(370773-370833)
chr6 (325-371)||(1442103-1442149)
chr6 (316-366)||(24417486-24417536)
chr6 (319-369)||(7564748-7564798)
chr6 (314-367)||(1470922-1470975)
chr6 (314-364)||(9819831-9819881)
chr6 (317-367)||(19119065-19119115)
chr6 (317-367)||(19126359-19126409)
chr6 (314-367)||(1459540-1459593)
chr6 (319-364)||(9703888-9703933)
chr6 (315-367)||(4183000-4183052)
chr6 (315-367)||(4743844-4743896)
chr6 (315-367)||(17368366-17368418)
[»] chr4 (5 HSPs)
chr4 (319-377)||(20016174-20016232)
chr4 (315-377)||(20019761-20019823)
chr4 (318-378)||(22672115-22672175)
chr4 (325-367)||(55419792-55419834)
chr4 (149-215)||(20019896-20019962)
[»] scaffold0044 (1 HSPs)
scaffold0044 (319-366)||(89147-89194)
[»] scaffold0015 (1 HSPs)
scaffold0015 (315-365)||(32330-32380)
[»] chr1 (7 HSPs)
chr1 (319-369)||(51381452-51381502)
chr1 (315-367)||(51858606-51858658)
chr1 (315-356)||(23896147-23896188)
chr1 (315-364)||(24629213-24629262)
chr1 (315-364)||(51782799-51782848)
chr1 (315-367)||(51756749-51756801)
chr1 (315-367)||(51854947-51854999)


Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 58)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 2441742 - 2442199
Alignment:
Q  18 gttcatacatctagtaccaattgttggaaaaacattcaggagtttacttttggtagtatccttcctgagcaatcaggtaaatttgtgagtgacacaatta 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2441742 gttcatacatctattaccaattgttggaaaaacattcaggagtttacttttggtagtatccttcctgagcaatcaggtaaatttgtgagtgacacaatta 2441841  T
Q  118 attggttggccgttattgattttgatgggagaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgattc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2441842 attggttggccgttattgattttgatgggagaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgattc 2441941  T
Q  218 tnnnnnnntaaatgtgtgtaacttcttggccttgtttgtgttgagagattgtttgtgcgtgacttatggtgatagtgattttgattcggttatgaaggat 317  Q
    |       ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2441942 tgggggggtaaatgtgtgtaacttcttggccttgtttgtgttgagggattgtttgtgcgtgacttatggtgatagtgattttgattcggttctgaaggat 2442041  T
Q  318 gtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttcttgcagggtagatcgaggtgtatctcatatttctgccaagc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2442042 gtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttcttgcagggtagatcgaggtgtatctcatatttctgccaagc 2442141  T
Q  418 cggtatatttatttgaggatgatcaagtgttgttgaagttgtcaggggcgtttaattc 475  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2442142 cggtatatttatttgaggatgatcaagtgttgttgaagttgacaggggcgtttaattc 2442199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 2644414 - 2644357
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||    
T  2644414 ggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacact 2644357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 2659204 - 2659147
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||    
T  2659204 ggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacact 2659147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 2696783 - 2696727
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  2696783 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgttcact 2696727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 4142185 - 4142129
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||    
T  4142185 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcact 4142129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 4157995 - 4157939
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||    
T  4157995 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcact 4157939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 3754600 - 3754666
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttcttgca 381  Q
    ||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||| || ||||||    
T  3754600 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtttactattccttgca 3754666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 13498223 - 13498273
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 364  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  13498223 ggatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 395
Target Start/End: Original strand, 7942484 - 7942565
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttcttgcagggtagatcgaggt 395  Q
    ||||||||||||||||||||||||||| |||||||| ||||||| |||||||| || | || ||| || || ||||||||||    
T  7942484 ggatgtttggattatgaaggagtatggtaataaagagtcttggattaaattgtacaatgttccttacatggaagatcgaggt 7942565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 754661 - 754609
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    |||||||||||||||||||||||||||| || |||| ||||||||||||||||    
T  754661 ggatgtttggattatgaaggagtatggagatcaagagtcttggactaaattgt 754609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 2456248 - 2456300
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    |||||||||| |||||||||| |||||||||||||| ||||||||||||||||    
T  2456248 ggatgtttgggttatgaaggaatatggaaataaagactcttggactaaattgt 2456300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 7324483 - 7324431
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    ||||||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  7324483 ggatgtttggattatgaaggactacggaaataaagagtcttggactaaattgt 7324431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 12132889 - 12133009
Alignment:
Q  95 taaatttgtgagtgacacaattaattggttggccgttattgattttgatgggagaagtccacgctttattatttcttttgatttggagaaagagtcttat 194  Q
    |||||||||||||| ||| |||||||||||  ||  ||||||| |||||   | |||||| || |||||| |||||||||||||||  |||||||||| |    
T  12132889 taaatttgtgagtggcacgattaattggttaacctctattgatcttgatccaaaaagtcctcgttttattgtttcttttgatttgggaaaagagtctttt 12132988  T
Q  195 caaaaggtattgcttcctgat 215  Q
    | |||||| |||| |||||||    
T  12132989 cgaaaggttttgcctcctgat 12133009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 378
Target Start/End: Original strand, 989396 - 989459
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 378  Q
    ||||||||| | ||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  989396 gatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttcactatttctt 989459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 366
Target Start/End: Complemental strand, 1891115 - 1891064
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  1891115 gatgtttggattatgaaggaacatggaaataaagactcttggactaaattgt 1891064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 7432105 - 7432050
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcac 370  Q
    |||||||||| ||||||||| |||||||||||||| || |||||||||||||||||    
T  7432105 gatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattgttcac 7432050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 1940630 - 1940564
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttcttgca 381  Q
    ||||||||| ||||||||||  |||||||| |||| || |||||||||||||||||| |||||||||    
T  1940630 gatgtttgggttatgaaggaacatggaaatcaagactcgtggactaaattgttcactatttcttgca 1940564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 2459277 - 2459327
Alignment:
Q  317 tgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 367  Q
    |||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttggacaaaattgtt 2459327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 2492083 - 2492133
Alignment:
Q  316 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  2492083 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 2492133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 2631358 - 2631408
Alignment:
Q  316 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaattgt 2631408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 364
Target Start/End: Complemental strand, 9562037 - 9561987
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 364  Q
    |||||||||||||||||| |||||||||||| |||| ||||||||||||||    
T  9562037 ggatgtttggattatgaatgagtatggaaatcaagagtcttggactaaatt 9561987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 12133094 - 12133160
Alignment:
Q  312 aaggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 378  Q
    |||||||||||| |||||| |||||||||||||| ||| || |||||||||||||||| | ||||||    
T  12133094 aaggatgtttgggttatgagggagtatggaaatagagagtcgtggactaaattgttcaatgtttctt 12133160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 13479311 - 13479508
Alignment:
Q  18 gttcatacatctagtaccaattgttggaaaaacattcaggagtttacttttggtagtatccttcctgagcaatcaggtaaatttgtgagtgacacaatta 117  Q
    ||||||||||   ||||| ||| |||||||| ||||||||||||| | ||||||  ||| | |  |||| |||| || ||||||||||||| ||  ||||    
T  13479311 gttcatacattgggtacccatttttggaaaaccattcaggagtttccctttggtgttatgcctgttgagaaatctggaaaatttgtgagtggcaggatta 13479410  T
Q  118 attggttggccgttattgattt-tgatgggagaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgat 215  Q
    |||||||||||  || ||||||  ||  | | |||||||||||| ||| ||||||||||||||  |||||| |||||| |||| || |||| |||||||    
T  13479411 attggttggcctctactgatttaagactgca-aagtccacgcttcattgtttcttttgatttgcggaaagaatcttatgaaaaagttttgcctcctgat 13479508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 2476633 - 2476690
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    ||||||||||||||||||  | |||||||||||||| |||||||||||||||| ||||    
T  2476633 ggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacact 2476690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 2502147 - 2502204
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    ||||||||||||||||||||||||||||||||| || | |||||||||| ||| ||||    
T  2502147 ggatgtttggattatgaaggagtatggaaataaggagttttggactaaactgtacact 2502204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 7334291 - 7334234
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    |||||||||||| |||||||| || ||||||||||| |||||||||||||||| ||||    
T  7334291 ggatgtttggatcatgaaggactacggaaataaagagtcttggactaaattgtacact 7334234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 364
Target Start/End: Complemental strand, 9608395 - 9608346
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 364  Q
    ||||||||| |||||||||| |||||||||| ||||||||||||||||||    
T  9608395 gatgtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 768379 - 768327
Alignment:
Q  316 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 368  Q
    |||||||||||||||| ||||| |||||| |||| ||||||||||||||||||    
T  768379 atgtttggattatgaatgagtacggaaatgaagagtcttggactaaattgttc 768327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 771551 - 771499
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    |||||||||| |||||||||| |||||||||| ||| ||||||||||||||||    
T  771551 ggatgtttgggttatgaaggaatatggaaatacagactcttggactaaattgt 771499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 803269 - 803213
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    ||||||||| ||||||| || |||||||||||||| ||||||||||| |||||||||    
T  803269 gatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttcact 803213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 7430588 - 7430536
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    ||||||||||||||||||| |||||||||||||| | |||| |||||||||||    
T  7430588 ggatgtttggattatgaagaagtatggaaataaaaagtcttagactaaattgt 7430536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 7432297 - 7432177
Alignment:
Q  96 aaatttgtgagtgacacaattaattggttggccgttattgattttgatgggagaagtccacgctttattatttcttttgatttggagaaagagtcttatc 195  Q
    |||||||| |||| |||||||||||||||| ||  |||||| ||| || ||  |||||||  ||||||| |||||| |||||||| ||| || || ||||    
T  7432297 aaatttgtaagtggcacaattaattggttgacctctattgaattttatagggaaagtccatactttattgtttcttatgatttggggaaggaatcatatc 7432198  T
Q  196 aaaaggtattgcttcctgatt 216  Q
    || |||| ||||| |||||||    
T  7432197 aagaggttttgctacctgatt 7432177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 9565881 - 9565829
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    |||||||||||||||||||||||| ||| || |||| ||||||||||||||||    
T  9565881 ggatgtttggattatgaaggagtacggagatcaagagtcttggactaaattgt 9565829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 37753397 - 37753345
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    |||||||||||||||| |||| |||||||| ||||| ||||||||||||||||    
T  37753397 ggatgtttggattatggaggaatatggaaagaaagagtcttggactaaattgt 37753345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 43991959 - 43992011
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    ||||||||||||||||||||| |||||||||| ||| |||||||| |||||||    
T  43991959 ggatgtttggattatgaaggaatatggaaatatagagtcttggaccaaattgt 43992011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 378
Target Start/End: Original strand, 968671 - 968734
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 378  Q
    ||||||||| ||||||||||  ||||||||||||| || ||||||||||| |||||| ||||||    
T  968671 gatgtttgggttatgaaggaacatggaaataaagagtcatggactaaattattcactatttctt 968734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 1931205 - 1931142
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 378  Q
    ||||||||| |||||| |||  ||||||||||||| || |||||||||||||||||| ||||||    
T  1931205 gatgtttgggttatgatggaacatggaaataaagactcctggactaaattgttcactatttctt 1931142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 956381 - 956435
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttca 369  Q
    |||||||||||||||||||| |||||||| ||||| ||||||  |||||||||||    
T  956381 gatgtttggattatgaaggaatatggaaaaaaagagtcttggcataaattgttca 956435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 7443027 - 7442977
Alignment:
Q  316 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    |||||||||| |||||||||||||||||| |||| ||||||||||| ||||    
T  7443027 atgtttggatcatgaaggagtatggaaatcaagagtcttggactaagttgt 7442977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 376
Target Start/End: Original strand, 1007461 - 1007522
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttc 376  Q
    ||||||||| | |||||||| ||||||||||| || || |||||||||||||||||| ||||    
T  1007461 gatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttcactatttc 1007522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 1022489 - 1022545
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    ||||||||| | |||||||| ||||||||||| || || ||||||||||||||||||    
T  1022489 gatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttcact 1022545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 1437995 - 1438046
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    |||||||||| |||||||||| |||||||||||||| ||||||| ||||||||    
T  1437995 ggatgtttgg-ttatgaaggaatatggaaataaagactcttggattaaattgt 1438046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 9587233 - 9587185
Alignment:
Q  318 gtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    ||||||||||||||||| ||||||||||||||  ||||||| |||||||    
T  9587233 gtttggattatgaaggaatatggaaataaagagccttggacaaaattgt 9587185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 9594674 - 9594622
Alignment:
Q  316 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 368  Q
    ||||||||||||||||  |||| |||||| |||| ||||||||||||||||||    
T  9594674 atgtttggattatgaataagtacggaaatgaagagtcttggactaaattgttc 9594622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 366
Target Start/End: Complemental strand, 746422 - 746383
Alignment:
Q  327 atgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  746422 atgaaggagtatggaaatcaagagtcttggactaaattgt 746383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 371
Target Start/End: Complemental strand, 2686354 - 2686307
Alignment:
Q  324 attatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    ||||||||||| |||||||| ||||| ||||||| |||||||||||||    
T  2686354 attatgaaggaatatggaaaaaaagagtcttggaataaattgttcact 2686307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 1937031 - 1936969
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttct 377  Q
    ||||||||| |||||||||| |||  ||||||||| || ||| |||||||||||||| |||||    
T  1937031 gatgtttgggttatgaaggaatataaaaataaagaatcctggtctaaattgttcactatttct 1936969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 7398228 - 7398178
Alignment:
Q  317 tgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 367  Q
    ||||||| | |||||||||||||||||| |||| ||||||| |||||||||    
T  7398228 tgtttggttgatgaaggagtatggaaatgaagagtcttggattaaattgtt 7398178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 23197014 - 23197064
Alignment:
Q  317 tgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 367  Q
    ||||||| | |||||||| ||||||||| |||| |||||||||||||||||    
T  23197014 tgtttggctgatgaaggaatatggaaatgaagaatcttggactaaattgtt 23197064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 997578 - 997623
Alignment:
Q  317 tgtttggattatgaaggagtatggaaataaagattcttggactaaa 362  Q
    ||||||| | |||||||| |||||||||||||| ||||||||||||    
T  997578 tgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 997623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 1013968 - 1014013
Alignment:
Q  317 tgtttggattatgaaggagtatggaaataaagattcttggactaaa 362  Q
    ||||||| | |||||||| |||||||||||||| ||||||||||||    
T  1013968 tgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 1014013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 2678582 - 2678541
Alignment:
Q  159 tttattatttcttttgatttggagaaagagtcttatcaaaag 200  Q
    |||||| |||||||||||||||  ||||||||||||||||||    
T  2678582 tttattgtttcttttgatttggcaaaagagtcttatcaaaag 2678541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 3754460 - 3754509
Alignment:
Q  151 gtccacgctttattatttcttttgatttggagaaagagtcttatcaaaag 200  Q
    |||||||||||||| |||||||||||||||  || ||||| |||||||||    
T  3754460 gtccacgctttattgtttcttttgatttggcaaaggagtcatatcaaaag 3754509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 4142328 - 4142279
Alignment:
Q  151 gtccacgctttattatttcttttgatttggagaaagagtcttatcaaaag 200  Q
    ||||| |||||||| |||||||||||||||  || |||||||||||||||    
T  4142328 gtccatgctttattgtttcttttgatttggcaaaggagtcttatcaaaag 4142279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 783851 - 783799
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    ||||||||||||||||||||| |||||||||| | |  | |||||||||||||    
T  783851 ggatgtttggattatgaaggaatatggaaatacaaagccatggactaaattgt 783799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 792955 - 792899
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    |||||||||||||||||||||||||| ||  | || ||||||| |||||| ||||||    
T  792955 gatgtttggattatgaaggagtatggtaaagaggaatcttggagtaaattattcact 792899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 2678450 - 2678394
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    ||||||||| |||||||  | |||||||| ||||| || ||||||||||||||||||    
T  2678450 gatgtttgggttatgaaacaatatggaaaaaaagagtcatggactaaattgttcact 2678394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 367
Target Start/End: Original strand, 3746012 - 3746060
Alignment:
Q  319 tttggattatgaaggagtatggaaataaagattcttggactaaattgtt 367  Q
    |||||||||||||||| |||| |||  |||| |||||||||||||||||    
T  3746012 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgtt 3746060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 31 - 390
Target Start/End: Complemental strand, 1078489 - 1078136
Alignment:
Q  31 gtaccaattgttggaaaaacattcaggagtttacttttggtagtatccttcctgagcaatcaggtaaatttgtgagtgacacaattaattggttggccgt 130  Q
    ||||||||| |||||||| |||||| |||||| ||||||||  | |||    ||  ||||| || |||||| |||||| ||| |||||||||||| ||      
T  1078489 gtaccaattcttggaaaagcattcaagagtttccttttggtgttgtcccaattggacaatctggaaaatttctgagtggcacgattaattggttgacctc 1078390  T
Q  131 tattgattttgatgggagaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgattctnnnnnnntaaat 230  Q
    ||||||| |  |  |   |||||| ||||||||| |||||||||||||||  ||||| |||||||||||||| |||| |||||||| |       || ||    
T  1078389 tattgatctccaacgagaaagtcctcgctttattgtttcttttgatttgggaaaagaatcttatcaaaaggttttgcctcctgattatggaggggtagat 1078290  T
Q  231 gtgtgtaacttcttggccttgtttgtgttgagagattgtttgtgcgtgacttatggtgatagtgattttgattcggttatgaaggatgtttggattatga 330  Q
    |||||| ||||||| ||||||  ||||||||| ||||| |||||| || ||| | |||||   |||    | || || |   ||||||||||| ||||||    
T  1078289 gtgtgtcacttcttagccttgggtgtgttgagggattgcttgtgcctggcttctcgtgat---gatacctactctgtaa---aggatgtttgggttatga 1078196  T
Q  331 aggagtatggaaataaagattcttggactaaattgttcactctttcttgcagggtagatc 390  Q
    ||||||||||||||| ||| || |||||||||||||||| | |||||| ||||| |||||    
T  1078195 aggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatc 1078136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 3927063 - 3927112
Alignment:
Q  319 tttggattatgaaggagtatggaaataaagattcttggactaaattgttc 368  Q
    ||||| |||||||||| |||||||||||| ||||||||||||||||||||    
T  3927063 tttgggttatgaaggattatggaaataaaaattcttggactaaattgttc 3927112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 24723212 - 24723267
Alignment:
Q  161 tattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgatt 216  Q
    |||| ||||| ||||||||||||| |||||||||||| || |||| ||||||||||    
T  24723212 tattgtttctcttgatttggagaaggagtcttatcaagagctatttcttcctgatt 24723267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 1421220 - 1421170
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattg 365  Q
    ||||||||| |||||||||| || ||||||||||| ||||||| |||||||    
T  1421220 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaattg 1421170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 7160805 - 7160752
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 368  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  7160805 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 7160752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 6538844 - 6538888
Alignment:
Q  325 ttatgaaggagtatggaaataaagattcttggactaaattgttca 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgttca 6538888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 7156243 - 7156190
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 368  Q
    ||||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  7156243 gatgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttc 7156190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 36577366 - 36577418
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 367  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 36577418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 7168738 - 7168688
Alignment:
Q  318 gtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 368  Q
    |||||| |||||||||| ||||||||||| |||||||||||||||||||||    
T  7168738 gtttggcttatgaaggaatatggaaataacgattcttggactaaattgttc 7168688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 7174424 - 7174371
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 368  Q
    ||||| ||| |||||||||| ||||||||| ||||||||||||||| |||||||    
T  7174424 gatgtctggcttatgaaggaatatggaaatcaagattcttggactagattgttc 7174371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 11237693 - 11237746
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 368  Q
    ||||||||| ||||| ||||||||||||||| |||  |||||||||||||||||    
T  11237693 gatgtttggcttatggaggagtatggaaatagagaaacttggactaaattgttc 11237746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 366
Target Start/End: Original strand, 33038160 - 33038211
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    |||||||||||||||||||| |||||||| ||| | |||||||||| |||||    
T  33038160 gatgtttggattatgaaggaatatggaaacaaaaagtcttggactagattgt 33038211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 33020314 - 33020364
Alignment:
Q  316 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    |||| |||||||||||||| |||||||||||| | |||||||||| |||||    
T  33020314 atgtgtggattatgaaggaatatggaaataaaaagtcttggactagattgt 33020364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 7200029 - 7199976
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 368  Q
    ||||||||| |||||||||||| ||||||| || |||||||| ||| |||||||    
T  7200029 gatgtttgggttatgaaggagtttggaaatgaaaattcttgggctagattgttc 7199976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 33026656 - 33026708
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    |||||||||| |||||||| | |||||||||||| | |||||||||| |||||    
T  33026656 ggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 33026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 34560969 - 34560917
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    ||||||||  |||||||| || |||||||||||| | ||||||||||||||||    
T  34560969 ggatgtttcaattatgaaagaatatggaaataaaaaatcttggactaaattgt 34560917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 11081813 - 11081865
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 367  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  11081813 gatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgtt 11081865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 23766913 - 23766857
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||    
T  23766913 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcact 23766857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 23816761 - 23816705
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||    
T  23816761 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcact 23816705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 23769697 - 23769641
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    |||||||||||||||||||| ||||| |||||||  |||||||||||||||||||||    
T  23769697 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcact 23769641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 23819545 - 23819489
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    |||||||||||||||||||| ||||| |||||||  |||||||||||||||||||||    
T  23819545 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcact 23819489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 20292994 - 20293044
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 364  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||||||||    
T  20292994 ggatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 2067110 - 2067074
Alignment:
Q  308 tatgaaggatgtttggattatgaaggagtatggaaat 344  Q
    |||||||||||||||||||||||||||||||||||||    
T  2067110 tatgaaggatgtttggattatgaaggagtatggaaat 2067074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 1427878 - 1427824
Alignment:
Q  157 gctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcc 211  Q
    |||||||| || |||||||||||| ||| ||||||||||||||||| ||||||||    
T  1427878 gctttattgttgcttttgatttggggaaggagtcttatcaaaaggttttgcttcc 1427824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 20301442 - 20301492
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 364  Q
    ||||||||||||||||||||| |||| || |||||| ||||||||||||||    
T  20301442 ggatgtttggattatgaaggaatatgcaattaaagagtcttggactaaatt 20301492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 20305855 - 20305905
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 364  Q
    |||||| |||||||||||||| ||||||| |||||| ||||||||||||||    
T  20305855 ggatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 20310259 - 20310309
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 364  Q
    |||||| |||||||||||||| ||||||| |||||| ||||||||||||||    
T  20310259 ggatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 11081910 - 11081955
Alignment:
Q  412 ccaagccggtatatttatttgaggatgatcaagtgttgttgaagtt 457  Q
    ||||| | |||||| |||||||||||||||||||||||||||||||    
T  11081910 ccaaggcagtatatatatttgaggatgatcaagtgttgttgaagtt 11081955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 23732167 - 23732223
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    |||||||||||||||||||| ||||| |||||||  ||||||| |||| ||||||||    
T  23732167 gatgtttggattatgaaggaatatgggaataaagcgtcttggaataaactgttcact 23732223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 1427744 - 1427689
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcac 370  Q
    ||||||||| ||||||| ||||||||||||| ||| ||||||| |||| |||||||    
T  1427744 gatgtttgggttatgaaagagtatggaaatacagagtcttggattaaactgttcac 1427689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 2067265 - 2067212
Alignment:
Q  147 agaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaag 200  Q
    |||| |||| |||||||| |||| | |||||||| |||||||||||||||||||    
T  2067265 agaaatccaagctttattgtttcatatgatttggggaaagagtcttatcaaaag 2067212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 23861077 - 23861021
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    ||||||||||| |||||||| ||||| |  ||||  |||||||||||||||||||||    
T  23861077 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcact 23861021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 326 - 374
Target Start/End: Original strand, 176345 - 176393
Alignment:
Q  326 tatgaaggagtatggaaataaagattcttggactaaattgttcactctt 374  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||    
T  176345 tatgaatgattatggaaataaagattcttggactaaattgttcactctt 176393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 378
Target Start/End: Complemental strand, 370833 - 370773
Alignment:
Q  318 gtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 378  Q
    |||||| |||||||| | |||||||||||||||||||||||||||||||||| | ||||||    
T  370833 gtttgggttatgaagaattatggaaataaagattcttggactaaattgttcaatatttctt 370773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 371
Target Start/End: Complemental strand, 1442149 - 1442103
Alignment:
Q  325 ttatgaaggagtatggaaataaagattcttggactaaattgttcact 371  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||    
T  1442149 ttatgaaggattatggaattaaagattcttggactaaattgttcact 1442103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 24417536 - 24417486
Alignment:
Q  316 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    |||||||||||||||| || |||||||||||||| ||||||||||||||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaattgt 24417486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 7564798 - 7564748
Alignment:
Q  319 tttggattatgaaggagtatggaaataaagattcttggactaaattgttca 369  Q
    ||||| |||||||||| |||||||| || ||||||||||||||||||||||    
T  7564798 tttgggttatgaaggattatggaaacaaggattcttggactaaattgttca 7564748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 1470975 - 1470922
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 367  Q
    |||| ||||| ||||||| || ||||||||||||||||||||| ||||||||||    
T  1470975 ggatatttgggttatgaaagattatggaaataaagattcttggtctaaattgtt 1470922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 364
Target Start/End: Complemental strand, 9819881 - 9819831
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 364  Q
    |||| ||||| |||||||||| |||||||||| ||| ||||||||||||||    
T  9819881 ggatatttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 19119065 - 19119115
Alignment:
Q  317 tgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 367  Q
    ||||||| | |||||||| ||||||||| |||| |||||||||||||||||    
T  19119065 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtt 19119115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 19126359 - 19126409
Alignment:
Q  317 tgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 367  Q
    ||||||| | |||||||| ||||||||| |||| |||||||||||||||||    
T  19126359 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtt 19126409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 1459593 - 1459540
Alignment:
Q  314 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 367  Q
    |||| ||||| ||||||| || | |||||||||||| |||||||||||||||||    
T  1459593 ggatatttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 1459540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 364
Target Start/End: Complemental strand, 9703933 - 9703888
Alignment:
Q  319 tttggattatgaaggagtatggaaataaagattcttggactaaatt 364  Q
    ||||| |||||||||| |||||||||| ||||| ||||||||||||    
T  9703933 tttggcttatgaaggaatatggaaatagagatttttggactaaatt 9703888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 4183052 - 4183000
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 367  Q
    ||||||||||| |||||||| |||||||||  | | |||||||||||||||||    
T  4183052 gatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 4183000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 4743896 - 4743844
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 367  Q
    ||||||||||| |||||||| |||||||||  | | |||||||||||||||||    
T  4743896 gatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 4743844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 17368366 - 17368418
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 367  Q
    ||||||||| | ||||| |||||||||||| |||  |||||||||||||||||    
T  17368366 gatgtttggctgatgaaagagtatggaaatgaagggtcttggactaaattgtt 17368418  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 319 - 377
Target Start/End: Complemental strand, 20016232 - 20016174
Alignment:
Q  319 tttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttct 377  Q
    ||||||| |||||||| ||||||| | |||| |||||||||||||||||||||||||||    
T  20016232 tttggatcatgaaggaatatggaattcaagagtcttggactaaattgttcactctttct 20016174  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 20019823 - 20019761
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttct 377  Q
    ||||||||| | |||||||| ||||||| | |||| |||||||||||||||||||||||||||    
T  20019823 gatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcactctttct 20019761  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 378
Target Start/End: Complemental strand, 22672175 - 22672115
Alignment:
Q  318 gtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 378  Q
    |||||| | |||||||| ||||||||||| || ||||||||||||||||||||| ||||||    
T  22672175 gtttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttcactatttctt 22672115  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 367
Target Start/End: Original strand, 55419792 - 55419834
Alignment:
Q  325 ttatgaaggagtatggaaataaagattcttggactaaattgtt 367  Q
    |||||||||  ||||||||||||||||||||||||||||||||    
T  55419792 ttatgaaggtttatggaaataaagattcttggactaaattgtt 55419834  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 20019962 - 20019896
Alignment:
Q  149 aagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgat 215  Q
    |||| ||| ||||||| |||||||||||||||||||||| | || || |||||| |||| |||||||    
T  20019962 aagtgcactctttattgtttcttttgatttggagaaagaattttgtcgaaaggttttgcctcctgat 20019896  T

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Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 89147 - 89194
Alignment:
Q  319 tttggattatgaaggagtatggaaataaagattcttggactaaattgt 366  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||||||    
T  89147 tttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 89194  T

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Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 32380 - 32330
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattg 365  Q
    ||||||||| |||||||||| |||||||||||||| ||||||| |||||||    
T  32380 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 32330  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 51381502 - 51381452
Alignment:
Q  319 tttggattatgaaggagtatggaaataaagattcttggactaaattgttca 369  Q
    ||||||||||||| || ||||||||| |||| |||||||||||||||||||    
T  51381502 tttggattatgaaagaatatggaaatgaagagtcttggactaaattgttca 51381452  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 51858606 - 51858658
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 367  Q
    ||||||||||| |||||||| |||||||||  ||| |||||||||||||||||    
T  51858606 gatgtttggatcatgaaggaatatggaaatgtagaatcttggactaaattgtt 51858658  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 356
Target Start/End: Complemental strand, 23896188 - 23896147
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttgg 356  Q
    ||||||||| |||||||||| |||||||||||||| ||||||    
T  23896188 gatgtttggcttatgaaggaatatggaaataaagagtcttgg 23896147  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 364
Target Start/End: Complemental strand, 24629262 - 24629213
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 364  Q
    ||||||||| |||||||||| || ||||||||||| ||||||| ||||||    
T  24629262 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaatt 24629213  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 364
Target Start/End: Original strand, 51782799 - 51782848
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 364  Q
    |||||||||||||||||||| ||||||||| || | ||||||| ||||||    
T  51782799 gatgtttggattatgaaggaatatggaaatgaacaatcttggaataaatt 51782848  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 51756801 - 51756749
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 367  Q
    ||||||||||| |||||||| |||||||||  | | |||||||||||||||||    
T  51756801 gatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 51756749  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 51854947 - 51854999
Alignment:
Q  315 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 367  Q
    ||||||||||| ||||| || |||||||||  ||| |||||||||||||||||    
T  51854947 gatgtttggatcatgaaagaatatggaaatgtagaatcttggactaaattgtt 51854999  T

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