View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5409_high_3 (Length: 438)
Name: NF5409_high_3
Description: NF5409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5409_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 6e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 71 - 218
Target Start/End: Complemental strand, 9870883 - 9870736
Alignment:
| Q |
71 |
gaaatacctaatggaagaaatagttcttactatgttctaccgttggagcttgcacatttggtatgtgttgaatgagctatagaggtaattattgtataag |
170 |
Q |
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| T |
9870883 |
gaaatacctaatggaagaaatagttcttactatgttctaccgttggagcttgcacatttggtatgtgttgaatgagctatagaggtaattattgtataag |
9870784 |
T |
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| Q |
171 |
attttatttatattatgactggtaaaacttaaatatggtatgtttgac |
218 |
Q |
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| T |
9870783 |
attttatttatattatgactggtaaaacttaaatatggtatgtttgac |
9870736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 279 - 390
Target Start/End: Complemental strand, 9870675 - 9870564
Alignment:
| Q |
279 |
caagtagttcactttcttttcagtggaatcaagtagttcacttgatcatgcaatctattaaataacagaatattattctttaagtatatatagccgtcgt |
378 |
Q |
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| T |
9870675 |
caagtagatcactttctttccagtggaatcaagtagttcacttgatcatgcaatctattaaataacagaatattattctttaagtatatatagccgtcgt |
9870576 |
T |
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| Q |
379 |
gatatattatta |
390 |
Q |
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| T |
9870575 |
gatatattatta |
9870564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 382 - 429
Target Start/End: Complemental strand, 9869576 - 9869529
Alignment:
| Q |
382 |
atattattatcgttaaatagaacgaaaataatatataaagagtattat |
429 |
Q |
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| T |
9869576 |
atattattatcgttaaatagaacgaaaataatatataaagagtattat |
9869529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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